Pesticide degradation
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Pesticide degradation is the process by which a pesticide is transformed into a benign substance that is environmentally compatible with the site to which it was applied. Globally, an estimated 1 to 2.5 million tons of active pesticide ingredients are used each year, mainly in
agriculture Agriculture or farming is the practice of cultivating plants and livestock. Agriculture was the key development in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that enabled people t ...
. Forty percent are herbicides, followed by insecticides and fungicides. Since their initial development in the 1940s, multiple chemical pesticides with different uses and
modes of action A mode of action (MoA) describes a functional or anatomical change, resulting from the exposure of a living organism to a substance. In comparison, a mechanism of action (MOA) describes such changes at the molecular level. A mode of action is impor ...
have been employed. Pesticides are applied over large areas in agriculture and urban settings. Pesticide use, therefore, represents an important source of diffuse chemical environmental inputs.


Persistence

In principle, pesticides are registered for use only after they are demonstrated not to persist in the environment considerably beyond their intended period of use. Typically, documented soil
half-lives Half-life (symbol ) is the time required for a quantity (of substance) to reduce to half of its initial value. The term is commonly used in nuclear physics to describe how quickly unstable atoms undergo radioactive decay or how long stable at ...
are in the range of days to weeks. However, pesticide residues are found ubiquitously in the environment in ng/liter to low μg/liter concentrations. For instance, surveys of
groundwater Groundwater is the water present beneath Earth's surface in rock and soil pore spaces and in the fractures of rock formations. About 30 percent of all readily available freshwater in the world is groundwater. A unit of rock or an unconsolidated ...
and not-yet-treated
potable Drinking water is water that is used in drink or food preparation; potable water is water that is safe to be used as drinking water. The amount of drinking water required to maintain good health varies, and depends on physical activity level, ag ...
water in industrialized countries typically detect 10 to 20 substances in recurrent findings above the maximum accepted drinking water concentration for pesticides in many countries. About half of the detected substances are no longer in use and another 10 to 20% are stable transformation products. Pesticide residues have been found in other realms. Transport from groundwater may lead to a low-level presence in surface waters. Pesticides have been detected in high-altitude regions, demonstrating sufficient persistence to survive transport across hundreds of kilometers in the atmosphere. Degradation involves both biotic and abiotic transformation processes. Biotic transformation is mediated by
microorganism A microorganism, or microbe,, ''mikros'', "small") and ''organism'' from the el, ὀργανισμός, ''organismós'', "organism"). It is usually written as a single word but is sometimes hyphenated (''micro-organism''), especially in olde ...
s, while abiotic transformation involves processes such as chemical and
photochemical Photochemistry is the branch of chemistry concerned with the chemical effects of light. Generally, this term is used to describe a chemical reaction caused by absorption of ultraviolet (wavelength from 100 to 400  nm), visible light (400–7 ...
reactions. The specific degradation processes for a given pesticide are determined by its structure and by the environmental conditions it experiences.
Redox gradient A redox gradient is a series of reduction-oxidation (redox) reactions sorted according to redox potential. The redox ladder displays the order in which redox reactions occur based on the free energy gained from redox pairs. These redox gradients ...
s in soils,
sediment Sediment is a naturally occurring material that is broken down by processes of weathering and erosion, and is subsequently transported by the action of wind, water, or ice or by the force of gravity acting on the particles. For example, sa ...
s or
aquifer An aquifer is an underground layer of water-bearing, permeable rock, rock fractures, or unconsolidated materials ( gravel, sand, or silt). Groundwater from aquifers can be extracted using a water well. Aquifers vary greatly in their characteris ...
s often determine which transformations can occur. Similarly, photochemical transformations require sunlight, available only in the topmost meter(s) of lakes or rivers, plant surfaces or submillimeter soil layers. Atmospheric phototransformation is another potential remediating influence. Information on pesticide degradation is available from the required test data. This includes laboratory tests on aqueous hydrolysis, photolysis in water and air,
biodegradability Biodegradation is the breakdown of organic matter by microorganisms, such as bacteria and fungi. It is generally assumed to be a natural process, which differentiates it from composting. Composting is a human-driven process in which biodegradati ...
in soils and water-sediment systems under
aerobic Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cel ...
and
anaerobic Anaerobic means "living, active, occurring, or existing in the absence of free oxygen", as opposed to aerobic which means "living, active, or occurring only in the presence of oxygen." Anaerobic may also refer to: * Anaerobic adhesive, a bonding a ...
conditions and fate in soil
lysimeter A lysimeter (from Greek λύσις (loosening) and the suffix ''-meter'') is a measuring device which can be used to measure the amount of actual evapotranspiration which is released by plants (usually crops or trees). By recording the amount of p ...
s. These studies provide little insight into how individual transformation processes contribute to observed degradation in situ. Therefore, they do not offer a rigorous understanding of how specific environmental conditions (e.g., the presence of certain reactants) affect degradation. Such studies further fail to cover unusual environmental conditions such as strongly sulfidic environments such as
estuaries An estuary is a partially enclosed coastal body of brackish water with one or more rivers or streams flowing into it, and with a free connection to the open sea. Estuaries form a transition zone between river environments and maritime environmen ...
or prairie potholes, nor do they reveal transformations at low residual concentrations at which
biodegradation Biodegradation is the breakdown of organic matter by microorganisms, such as bacteria and fungi. It is generally assumed to be a natural process, which differentiates it from composting. Composting is a human-driven process in which biodegrada ...
may stop. Thus, although molecular structure generally predicts intrinsic reactivity, quantitative predictions are limited.


Biotic transformation

Biodegradation is generally recognized as the biggest contributor to degradation. Whereas plants, animals and fungi ('' Eukaryota'') typically transform pesticides for detoxification through metabolism by broad-spectrum enzymes, bacteria (''
Prokaryota A prokaryote () is a single-celled organism that lacks a nucleus and other membrane-bound organelles. The word ''prokaryote'' comes from the Greek πρό (, 'before') and κάρυον (, 'nut' or 'kernel').Campbell, N. "Biology:Concepts & Connec ...
'') more commonly
metabolize Metabolism (, from el, μεταβολή ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cell ...
them. This dichotomy is likely due to a wider range of sensitive targets in Eukaryota. For example, organophosphate
ester In chemistry, an ester is a compound derived from an oxoacid (organic or inorganic) in which at least one hydroxyl group () is replaced by an alkoxy group (), as in the substitution reaction of a carboxylic acid and an alcohol. Glycerides a ...
s that interfere with
nerve signal An action potential occurs when the membrane potential of a specific cell location rapidly rises and falls. This depolarization then causes adjacent locations to similarly depolarize. Action potentials occur in several types of animal cells, c ...
transmission in insects do not affect microbial processes and offer nourishment for microorganisms whose enzymes can
hydrolyze Hydrolysis (; ) is any chemical reaction in which a molecule of water breaks one or more chemical bonds. The term is used broadly for substitution, elimination, and solvation reactions in which water is the nucleophile. Biological hydrolysis ...
phosphotriesters. Bacteria are more likely to contain such enzymes because of their strong selection for new enzymes and metabolic pathways that supply essential nutrients. In addition, genes move horizontally within microbial populations, spreading newly evolved degradation pathways. Some transformations, particularly substitutions, can proceed both biotically and abiotically, although enzyme-catalyzed reactions typically reach higher rates. For example, the hydrolytic dechlorination of
atrazine Atrazine is a chlorinated herbicide of the triazine class. It is used to prevent pre-emergence broadleaf weeds in crops such as maize (corn), soybean and sugarcane and on turf, such as golf courses and residential lawns. Atrazine's primary manu ...
to hydroxyatrazine in soil by atrazine-dechlorinating bacterial enzymes reached a second-order rate constant of 105/
mole Mole (or Molé) may refer to: Animals * Mole (animal) or "true mole", mammals in the family Talpidae, found in Eurasia and North America * Golden moles, southern African mammals in the family Chrysochloridae, similar to but unrelated to Talpida ...
/second, likely dominating in the environment. In other cases, enzymes facilitate reactions with no abiotic counterpart, as with the herbicide
glyphosate Glyphosate (IUPAC name: ''N''-(phosphonomethyl)glycine) is a broad-spectrum systemic herbicide and crop desiccant. It is an organophosphorus compound, specifically a phosphonate, which acts by inhibiting the plant enzyme 5-enolpyruvylshik ...
, which contains a C-P bond that is stable with respect to light, reflux in strong acid or base, and other abiotic conditions. Microbes that cleave the C-P bond are widespread in the environment, and some can metabolize glyphosate. The ''C-P lyase'' enzyme system is encoded by a complicated 14-gene
operon In genetics, an operon is a functioning unit of DNA containing a cluster of genes under the control of a single promoter. The genes are transcribed together into an mRNA strand and either translated together in the cytoplasm, or undergo splic ...
. Biodegradation transformation intermediates may accumulate when the enzymes that produce the intermediate operate more slowly than those that consume it. In atrazine metabolism, for example, a substantial steady-state level of hydroxyatrazine accumulates from such a process. In other situations (e.g., in
agricultural wastewater treatment Agricultural wastewater treatment is a farm management agenda for controlling pollution from confined animal operations and from surface runoff that may be contaminated by chemicals in fertilizer, pesticides, animal slurry, crop residues or i ...
), microorganisms mostly grow on other, more readily assimilable carbon substrates, whereas pesticides present at trace concentrations are transformed through fortuitous metabolism, producing potentially recalcitrant intermediates. Pesticides persist over decades in
groundwater Groundwater is the water present beneath Earth's surface in rock and soil pore spaces and in the fractures of rock formations. About 30 percent of all readily available freshwater in the world is groundwater. A unit of rock or an unconsolidated ...
, although bacteria are in principle abundant and potentially able to degrade them for unknown reasons. This may be related to the observation that microbial degradation appears to stall at low pesticide concentrations in low-nutrient environments such as groundwater. As yet, very little is known about pesticide biodegradation under such conditions. Methods have been lacking to follow biodegradation in groundwater over the relevant long time scales and to isolate relevant degraders from such environments.


Abiotic Transformation

In surface waters, phototransformation can substantially contribute to degradation. In “direct” phototransformation, photons are absorbed by the contaminant, while in “indirect” phototransformation, reactive species are formed through photon absorption by other substances. Pesticide electronic absorption spectra typically show little overlap with sunlight, such that only a few (e.g., trifluralin) are affected by direct phototransformation. Various photochemically active light absorbers are present in surface waters, enhancing indirect phototransformation. The most prominent is
dissolved organic matter Dissolved organic carbon (DOC) is the fraction of organic carbon operationally defined as that which can pass through a filter with a pore size typically between 0.22 and 0.7 micrometers. The fraction remaining on the filter is called part ...
(DOM), which is the precursor of excited triplet states, molecular oxygen, superoxide radical
anion An ion () is an atom or molecule with a net electrical charge. The charge of an electron is considered to be negative by convention and this charge is equal and opposite to the charge of a proton, which is considered to be positive by conve ...
s, and other radicals. Nitrate and nitrite ions produce
hydroxyl In chemistry, a hydroxy or hydroxyl group is a functional group with the chemical formula and composed of one oxygen atom covalently bonded to one hydrogen atom. In organic chemistry, alcohols and carboxylic acids contain one or more hydro ...
radicals under irradiation. Indirect phototransformation is thus the result of parallel reactions with all available reactive species. The transformation rate depends on the concentrations of all relevant reactive species, together with their corresponding second-order rate constants for a given pesticide. These constants are known for hydroxyl radical and molecular oxygen. In the absence of such rate constants,
quantitative structure–activity relationship Quantitative structure–activity relationship models (QSAR models) are regression or classification models used in the chemical and biological sciences and engineering. Like other regression models, QSAR regression models relate a set of "predic ...
s(QSARs) may allow their estimation for a specific pesticide from its chemical structure. The relevance of "dark" (aphotic) abiotic transformations varies by pesticide. The presence of functional groups supports textbook predictions for some compounds. For example, aqueous abiotic hydrolysis degrades organophosphates, carboxylic acid esters, carbamates,
carbonate A carbonate is a salt of carbonic acid (H2CO3), characterized by the presence of the carbonate ion, a polyatomic ion with the formula . The word ''carbonate'' may also refer to a carbonate ester, an organic compound containing the carbonate ...
s, some halides ( methyl bromide, propargyl) and many more. Other pesticides are less amenable. Conditions such as high pH or low-redox environments combined with in situ catalyst formation including (poly)sulfides, surface-bound Fe(II) or . Microorganisms often mediate the latter, blurring the boundary between abiotic and biotic transformations. Chemical reactions may also prevail in compartments such as groundwater or lake
hypolimnion The hypolimnion or under lake is the dense, bottom layer of water in a thermally- stratified lake. The word hypolimnion is derived from the Greek "limnos" meaning "lake". It is the layer that lies below the thermocline. Typically the hypolimni ...
, which have hydraulic retention times on the order of years and where biomass densities are lower due to the almost complete absence of assimilable organic carbon.


Prediction

Available strategies to identify in situ pesticide transformation include measuring remnant or transformation product concentrations and estimating of a given environment's theoretical transformation potential. Measurements are only usable on the micro- or
mesocosm thumb , Diagram of a small form closed system mesocosm. A mesocosm (''meso-'' or 'medium' and ''-cosm'' 'world') is any outdoor experimental system that examines the natural environment under controlled conditions. In this way mesocosm studie ...
scale.
Gas chromatography–mass spectrometry Gas chromatography–mass spectrometry (GC-MS) is an analytical method that combines the features of gas-chromatography and mass spectrometry to identify different substances within a test sample. Applications of GC-MS include drug detection, ...
(GC-MS) or liquid chromatography-tandem mass spectrometry (LC-MS/MS) does not distinguish transformation from other processes such as dilution or sorption unless combined with stringent mass balance modelling. Carbon 14-labeled pesticides do enable mass balances, but investigations with radioactively tagged substrates cannot be conducted in the field. Transformation product detection may calibrate degradation. Target analysis is straightforward when products and standards are understood, while suspect/nontarget analysis can be attempted otherwise. High-resolution mass spectrometry facilitated the development of multi-component analytical methods for 150 pesticide transformation products and for screening for suspected transformation products. In combination with transformation product structure models, screening allows a more comprehensive assessment of transformation products, independent of field degradation studies. Isotopic analysis may complement product measurements because it can measure degradation in the absence of metabolites and has the potential to cover sufficiently long time scales to assess transformation in groundwater. Isotope ratios (e.g.,/, /) can reveal history in the absence of any label. Because kinetic isotope effects typically favor the transformation of light isotopes (e.g., ), heavy isotopes (13C) become enriched in residues. An increased / isotope ratio in a parent compound thus provides direct evidence of degradation. Repeated pesticide analyses, in groundwater over time, or direct measurements in combination with groundwater dating that show increasing / isotope ratios in a parent pesticide, provides direct evidence of degradation, even if the pesticide was released long before. Multiple transformation pathways were revealed for atrazine by measuring the isotope effects of multiple elements. In such a case, transformation mechanisms are identifiable from plots of / versus / parent compound data, reflecting different underlying carbon- and nitrogen-isotope effects. The approach requires a relatively high amount of substance for gas chromatography–isotope ratio mass spectrometry (GC-IRMS) or LC-IRMS analysis (100 ng to 1 μg), which, for instance, requires extraction of 10 liters of groundwater at pesticide concentrations of 100 ng/liter. For the special case of
chiral Chirality is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek (''kheir''), "hand", a familiar chiral object. An object or a system is ''chiral'' if it is distinguishable from i ...
pesticides, enantiomer analysis may substitute for isotopes in such analyses as a result of stereoselective reactions. Combining isotope and chirality measurement can increase prediction strength. Geochemical analysis including pH, redox potential and dissolved ions is routinely applied to assess the potential for biotic and abiotic transformations, complicated by any lack of specificity in the targets. Selective probe compounds must be used to detect individual reactive species when a mixture of reactive species is present. Combining probe compounds and scavengers or quenchers increases accuracy. E.g., N, N-dimethylaniline, used as a probe for the carbonate radical reacts very quickly with DOM-excited triplet states and its oxidation is hampered by DOM. 13C-labeled parent pesticides were used in the nontarget analysis of degraders by stable isotope probing (SIP) to demonstrate biotransformation potential in soil and sediment samples. A complimentary, potentially more quantitative technique is to directly enumerate the biodegradative gene(s) via quantitative
polymerase chain reaction The polymerase chain reaction (PCR) is a method widely used to rapidly make millions to billions of copies (complete or partial) of a specific DNA sample, allowing scientists to take a very small sample of DNA and amplify it (or a part of it) ...
(QPCR), gene sequencing or functional gene microarrays. A prerequisite for genetic approaches, however, is that the involved genes can be clearly linked to a given transformation reaction. For instance, the ''atzD'' gene encoding
cyanuric acid Cyanuric acid or 1,3,5-triazine-2,4,6-triol is a chemical compound with the formula (CNOH)3. Like many industrially useful chemicals, this triazine has many synonyms. This white, odorless solid finds use as a precursor or a component of bleach ...
hydrolase correlates with atrazine biodegradation in agricultural soil surface layers, consistent with ''AtzDs cleavage of the s-triazine ring during bacterial atrazine metabolism. ''AtzD'' was unambiguously identifiable and hence quantifiable, as unusually, it belongs to a protein family that largely consists of biodegradative enzymes. Most proteins studied to date are members of very large protein superfamilies, with as many as 600,000 individual members, with diverse functions. Another factor confounding gene-based approaches is that biodegradative function can arise independently in evolution, such that multiple unrelated genes catalyze the same reaction. E.g., organophosphate esterases that differ markedly in their fold and mechanism can act on the same organophosphate pesticide.


Transformation products

Even though their undesirable effects are typically lowered, transformation products may remain problematic. Some transformations leave active
moiety Moiety may refer to: Chemistry * Moiety (chemistry), a part or functional group of a molecule ** Moiety conservation, conservation of a subgroup in a chemical species Anthropology * Moiety (kinship), either of two groups into which a society is ...
intact, such as oxidation of
thioethers In organic chemistry, an organic sulfide (British English sulphide) or thioether is an organosulfur functional group with the connectivity as shown on right. Like many other sulfur-containing compounds, volatile sulfides have foul odors. A sul ...
to sulfones and sulfoxides. Parent/transformation product mixtures may have additive effects. Second, some products are more potent than their parents. Phenolic degradates of such diverse chemical classes as
pyrethroid A pyrethroid is an organic compound similar to the natural pyrethrins, which are produced by the flowers of pyrethrums (''Chrysanthemum cinerariaefolium'' and '' C. coccineum''). Pyrethroids are used as commercial and household insecticides. I ...
s and aryloxyphenoxypropionic herbicides may act on
estrogen receptor Estrogen receptors (ERs) are a group of proteins found inside cells. They are receptors that are activated by the hormone estrogen (17β-estradiol). Two classes of ER exist: nuclear estrogen receptors ( ERα and ERβ), which are members of the ...
. Such products should receive particular attention because they are often smaller and more polar than their parents. This increases their potential to reach drinking water resources such as groundwater and surface waters, where polar products are found at fairly constant concentrations. Products in drinking water resources may cause problems such as formation of
carcinogenic A carcinogen is any substance, radionuclide, or radiation that promotes carcinogenesis (the formation of cancer). This may be due to the ability to damage the genome or to the disruption of cellular metabolic processes. Several radioactive subs ...
N-nitroso-dimethylamine from dimethylsulfamide, a microbial product of the fungicides tolylfluanide and dichlofluanide, during water treatment with
ozone Ozone (), or trioxygen, is an inorganic molecule with the chemical formula . It is a pale blue gas with a distinctively pungent smell. It is an allotrope of oxygen that is much less stable than the diatomic allotrope , breaking down in the lo ...
. The issue is specifically addressed in major regulatory frameworks. In Europe, for instance, "nonrelevant" metabolites are distinguished from metabolites that are "relevant for groundwater resources" or even "ecotoxicologically relevant". The latter are those whose risk to soil or aquatic biota is comparable to or higher than the parent and must meet the same standards as their parent. Groundwater-relevant metabolites are those likely to reach groundwater in concentrations above 0.1 μg/liter and to display the same toxicity as the parent compound. In the past toxicology issues typically emerged only decades after market introduction. Examples are the detection of chloridazon products (first marketed in 1964) in surface and groundwater, or tolylfluanid (first marketed in 1971). That these substances were overlooked for so long may partially be attributable to prior limits on analytical capabilities. However, labeling some metabolites as nonrelevant may have resulted in directing attention away from them. The decision to tolerate up to 10 μg/liter of "nonrelevant" metabolites in groundwater and drinking water is politically highly contentious in Europe. Some consider the higher limit acceptable as no imminent health risk can be proven, whereas others regard it as a fundamental deviation from the precautionary principle.


References

{{pesticides, state=expanded Pesticides