TheInfoList

Allopatric speciation (from Ancient Greek ἄλλος, ''allos'', meaning "other", and πατρίς, ''patris'', "fatherland"), also referred to as geographic speciation, vicariant speciation, or its earlier name, the dumbbell model, is a mode of
speciation Speciation is the evolution Evolution is change in the Heredity, heritable Phenotypic trait, characteristics of biological populations over successive generations. These characteristics are the Gene expression, expressions of genes that are ...

that occurs when biological
population Population typically refers the number of people in a single area whether it be a city or town, region, country, or the world. Governments typically quantify the size of the resident population within their jurisdiction by a process called a ...

s become geographically isolated from each other to an extent that prevents or interferes with
gene flow In population genetics, gene flow (also known as gene migration or allele flow) is the transfer of genetic variation, genetic material from one population to another. If the rate of gene flow is high enough, then two populations will have equivale ...

. Various geographic changes can arise such as the movement of continents, and the formation of mountains, islands, bodies of water, or glaciers. Human activity such as
agriculture Agriculture is the science, art and practice of cultivating plants and livestock. Agriculture was the key development in the rise of , whereby farming of species created food that enabled people to live in cities. The began thousands of ...

or developments can also change the distribution of species populations. These factors can substantially alter a region's
geography Geography (from Greek Greek may refer to: Greece Anything of, from, or related to Greece Greece ( el, Ελλάδα, , ), officially the Hellenic Republic, is a country located in Southeast Europe. Its population is approximately 10. ...

, resulting in the separation of a species population into isolated subpopulations. The vicariant populations then undergo changes as they become subjected to different selective pressures, experience
genetic drift Genetic drift (allelic drift or the Sewall Wright effect) is the change in the frequency of an existing gene In biology, a gene (from ''genos'' "...Wilhelm Johannsen coined the word gene to describe the Mendelian_inheritance#History, M ...

, and accumulate different
mutation A red tulip exhibiting a partially yellow petal due to a mutation in its genes In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processe ...
s in the separated populations
gene pool The gene pool is the set of all genes, or genetic information, in any population, usually of a particular species. Description A large gene pool indicates extensive genetic diversity, which is associated with robust populations that can surviv ...
s. The barriers prevent the exchange of genetic information between the two populations leading to
reproductive isolation The mechanisms of reproductive isolation are a collection of evolutionary mechanisms, ethology, behaviors and physiology, physiological processes critical for speciation. They prevent members of different species from producing offspring, or ensur ...
. If the two populations come into contact they will be unable to reproduce—effectively speciating. Other isolating factors such as population dispersal leading to
emigration Emigration is the act of leaving a resident country or place of residence with the intent to settle elsewhere (to permanently leave a country). Conversely, immigration Immigration is the international movement of people to a destination c ...
can cause speciation (for instance, the dispersal and isolation of a species on an oceanic island) and is considered a special case of allopatric speciation called
peripatric speciation Peripatric speciation is a mode of speciation Speciation is the evolution Evolution is change in the Heredity, heritable Phenotypic trait, characteristics of biological populations over successive generations. These characteristics are t ...
. Allopatric speciation is typically subdivided into two major models: vicariance and peripatric. Both models differ from one another by virtue of their population sizes and geographic isolating mechanisms. The terms ''allopatry'' and ''vicariance'' are often used in
biogeography Biogeography is the study of the distribution of species and ecosystems in geography, geographic space and through evolutionary history of life, geological time. Organisms and biological community (ecology), communities often vary in a regular f ...

to describe the relationship between
organism In biology, an organism () is any organic, life, living system that functions as an individual entity. All organisms are composed of cells (cell theory). Organisms are classified by taxonomy (biology), taxonomy into groups such as Multice ...

s whose ranges do not significantly overlap but are immediately adjacent to each other—they do not occur together or only occur within a narrow zone of contact. Historically, the language used to refer to modes of speciation directly reflected biogeographical distributions. As such, allopatry is a geographical distribution opposed to
sympatry In biology, two related species or populations are considered sympatric when they exist in the same geographic area and thus frequently encounter one another. An initially interbreeding population that splits into two or more distinct species shar ...
(speciation within the same area). Furthermore, the terms allopatric, vicariant, and geographical speciation are often used interchangeably in the scientific literature. This article will follow a similar theme, with the exception of special cases such as peripatric, centrifugal, among others. Observation of nature creates difficulties in witnessing allopatric speciation from "start-to-finish" as it operates as a dynamic process. From this arises a host of various issues in defining species, defining isolating barriers, measuring
reproductive isolation The mechanisms of reproductive isolation are a collection of evolutionary mechanisms, ethology, behaviors and physiology, physiological processes critical for speciation. They prevent members of different species from producing offspring, or ensur ...
, among others. Nevertheless, verbal and mathematical models, laboratory experiments, and empirical evidence overwhelmingly supports the occurrence of allopatric speciation in nature. Mathematical modeling of the genetic basis of reproductive isolation supports the plausibility of allopatric speciation; whereas laboratory experiments of ''
Drosophila ''Drosophila'' () is a genus of fly, flies, belonging to the family (biology), family Drosophilidae, whose members are often called "small fruit flies" or (less frequently) pomace flies, vinegar flies, or wine flies, a reference to the character ...

'' and other animal and plant species have confirmed that reproductive isolation evolves as a byproduct of
natural selection Natural selection is the differential survival and reproduction of individuals due to differences in phenotype right , Here the relation between genotype and phenotype is illustrated, using a Punnett square, for the character of peta ...
.

# Vicariance model

The notion of vicariant evolution was first developed by
Leon Croizat Leon, Léon (French) or León (Spanish) may refer to: Places Europe * León, Spain, capital city of the Province of León * Province of León, Spain * Kingdom of León, an independent state in the Iberian Peninsula from 910 to 1230 and again from ...
in the mid-twentieth century. The Vicariance theory, which showed coherence along with the acceptance of plate tectonics in the 1960s, was developed in the early 1950s by this Venezuelan botanist, who had found an explanation to the existence of American and Africa similar plants, by deducing that they had originally been a single population before the two continents drifted apart. Currently, speciation by vicariance is widely regarded as the most common form of speciation; and is the primary model of allopatric speciation. Vicariance is a process by which the geographical range of an individual
taxon In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processes, Molecular biology, molecular interactions, Physiology, physiological mechanism ...
, or a whole biota, is split into discontinuous populations (
disjunct distribution In biology, a taxon In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processes, Molecular biology, molecular interactions, Physiology, phy ...
s) by the formation of an extrinsic barrier to the exchange of genes: that is, a barrier arising externally to a species. These extrinsic barriers often arise from various
geologic Geology (from the Ancient Greek Ancient Greek includes the forms of the Greek language used in ancient Greece and the classical antiquity, ancient world from around 1500 BC to 300 BC. It is often roughly divided into the following peri ...

-caused,
topographic Topography is the study of the forms and features of land surfaces. The topography of an area could refer to the surface forms and features themselves, or a description (especially their depiction in maps). Topography is a field of geoscience ...
changes such as: the formation of mountains (
orogeny Orogeny is the primary mechanism by which mountains are formed on continents. An orogeny is an event that takes place at a convergent plate margin when plate motion compresses the margin. This leads to both structural deformation Deformation ...
); the formation of rivers or bodies of water;
glaciation A glacial period (alternatively glacial or glaciation) is an interval of time (thousands of years) within an ice age An ice age is a long period of reduction in the temperature of Earth Earth is the third planet from the Sun and the on ...
; the formation or elimination of
land bridge Image:Pm-map.png, upright=1.3, The Isthmus of Panama is a land bridge whose appearance 3 million years ago allowed the Great American Interchange In biogeography, a land bridge is an isthmus or wider land connection between otherwise separate are ...
s; the movement of continents over time (by
tectonic plates This is a list of tectonic plates on Earth's surface. Tectonic plates are pieces of Earth's crust 350px, Plates in the crust of Earth Earth's crust is a thin shell on the outside of Earth, accounting for less than 1% of Earth's volume. It is ...

); or island formation, including
sky island File:Chiricahua mtns-kmf.JPG, The Chiricahua Mountains above the desert Sky islands are isolated mountains surrounded by radically different lowland environments. The term originally referred to those found near the southern borders of the US S ...
s. Vicariant barriers can change the distribution of species populations. Suitable or unsuitable
habitat Ibex in an alpine habitat In ecology Ecology (from el, οἶκος, "house" and el, -λογία, label=none, "study of") is the study of the relationships between living organisms, including humans, and their physical environment. ...

may be come into existence, expand, contract, or disappear as a result of global climate change or even large scale human activities (for example, agricultural,
civil engineering Civil engineering is a professional engineering Regulation and licensure in engineering is established by various jurisdictions of the world to encourage public welfare, safety, well-being and other interests of the general public and to define ...
developments, and
habitat fragmentation Fragmentation and destruction of Great Ape habitat in Central Africa, from thGLOBIOand GRASP projects (2002). Areas shown in black and red delineate areas of severe and moderate habitat loss, respectively. Habitat fragmentation describes the emer ...
). Such factors can alter a region's geography in substantial ways, resulting in the separation of a species population into isolated subpopulations. The vicariant populations may then undergo
genotypic Here the relation between genotype and phenotype is illustrated, using a Punnett square, for the character of petal colour in a pea plant. The letters B and b represent alleles for colour and the pictures show the resultant flowers. The punnet s ...
or
phenotypic right , Here the relation between genotype and phenotype is illustrated, using a Punnett square, for the character of petal color in pea plants. The letters B and b represent gene In biology, a gene (from ''genos'' "...Wilhelm Johannsen ...
divergence as: (a) different
mutation A red tulip exhibiting a partially yellow petal due to a mutation in its genes In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processe ...
s arise in the
gene pool The gene pool is the set of all genes, or genetic information, in any population, usually of a particular species. Description A large gene pool indicates extensive genetic diversity, which is associated with robust populations that can surviv ...
s of the populations, (b) they become subjected to different selective pressures, and/or (c) they independently undergo
genetic drift Genetic drift (allelic drift or the Sewall Wright effect) is the change in the frequency of an existing gene In biology, a gene (from ''genos'' "...Wilhelm Johannsen coined the word gene to describe the Mendelian_inheritance#History, M ...

. The extrinsic barriers prevent the exchange of genetic information between the two populations, potentially leading to differentiation due to the
ecologically Ecology (from el, οἶκος, "house" and el, -λογία, label=none, "study of") is the study of the relationships between living organisms, including humans, and their physical environment. Topics of interest include the biodiversity ...
different habitats they experience; selective pressure then invariably leads to complete
reproductive isolation The mechanisms of reproductive isolation are a collection of evolutionary mechanisms, ethology, behaviors and physiology, physiological processes critical for speciation. They prevent members of different species from producing offspring, or ensur ...
. Furthermore, a species' proclivity to remain in its
ecological niche In ecology Ecology (from el, οἶκος, "house" and el, -λογία, label=none, "study of") is the study of the relationships between living organisms, including humans, and their physical environment. Ecology considers organisms ...

(see phylogenetic niche conservatism) through changing environmental conditions may also play a role in isolating populations from one another, driving the evolution of new lineages. Allopatric speciation can be represented as the extreme on a
gene flow In population genetics, gene flow (also known as gene migration or allele flow) is the transfer of genetic variation, genetic material from one population to another. If the rate of gene flow is high enough, then two populations will have equivale ...

continuum. As such, the level of gene flow between populations in allopatry would be $m=0$, where $m$ equals the rate of gene exchange. In sympatry $m=0.5$ (panmixis), while in
parapatric speciation In parapatric speciation, two subpopulations of a species evolve reproductive isolation from one another while continuing to exchange genes. This mode of speciation has three distinguishing characteristics: 1) mating occurs non-randomly, 2) gen ...
, $0 < m < 0.5$ represents the entire continuum, although some scientists argue that a classification scheme based solely on geographic mode does not necessarily reflect the complexity of speciation. Allopatry is often regarded as the default or "null" model of speciation, but this too is debated.

## Reproductive isolation

Reproductive isolation acts as the primary mechanism driving genetic divergence in allopatry and can be amplified by divergent selection. Pre-zygotic and post-zygotic isolation are often the most cited mechanisms for allopatric speciation, and as such, it is difficult to determine which form evolved first in an allopatric speciation event. Pre-zygotic simply implies the presence of a barrier prior to any act of fertilization (such as an environmental barrier dividing two populations), while post-zygotic implies the prevention of successful inter-population crossing after fertilization (such as the production of an infertile
hybrid Hybrid may refer to: Economics and finance * Hybrid market, a system allowing stock trades to be completed either electronically or manually * Hybrid security, a type of economic instrument Technology Electrical power generation * Hybrid generato ...
). Since species pairs who diverged in allopatry often exhibit pre- and post-zygotic isolation mechanisms, investigation of the earliest stages in the life cycle of the species can indicate whether or not divergence occurred due to a pre-zygotic or post-zygotic factor. However, establishing the specific mechanism may not be accurate, as a species pair continually diverges over time. For example, if a plant experiences a chromosome duplication event, reproduction will occur, but sterile hybrids will result—functioning as a form of post-zygotic isolation. Subsequently, the newly formed species pair may experience pre-zygotic barriers to reproduction as selection, acting on each species independently, will ultimately lead to genetic changes making hybrids impossible. From the researcher's perspective, the current isolating mechanism may not reflect the past isolating mechanism.

## Reinforcement

Reinforcement has been a contentious factor in speciation. It is more often invoked in
sympatric speciation Sympatric speciation is the evolution of a new species from a surviving ancestral species while both continue to inhabit the same geographic region. In evolutionary biology and biogeography, sympatric and sympatry are terms referring to organisms ...
studies, as it requires gene flow between two populations. However, reinforcement may also play a role in allopatric speciation, whereby the reproductive barrier is removed, reuniting the two previously isolated populations. Upon
secondary contact Secondary contact is the process in which two allopatricaly distributed populations of a species are geographically reunited. This contact allows for the potential for the exchange of genes, dependent on how reproductively isolated The mechanism ...
, individuals reproduce, creating low- fitness hybrids. Traits of the hybrids drive individuals to discriminate in mate choice, by which pre-zygotic isolation increases between the populations. Some arguments have been put forth that suggest the hybrids themselves can possibly become their own species: known as
hybrid speciation Hybrid speciation is a form of speciation Speciation is the evolution Evolution is change in the Heredity, heritable Phenotypic trait, characteristics of biological populations over successive generations. These characteristics are the G ...
. Reinforcement can play a role in all geographic modes (and other non-geographic modes) of speciation as long as gene flow is present and viable hybrids can be formed. The production of inviable hybrids is a form of reproductive character displacement, under which most definitions is the completion of a speciation event. Research has well established the fact that
interspecific Biological specificity is the tendency of a characteristic such as a behavior or a biochemical Biochemistry or biological chemistry, is the study of chemical processes within and relating to living organism In biology, an organism (from ...
mate discrimination occurs to a greater extent between sympatric populations than it does in purely allopatric populations; however, other factors have been proposed to account for the observed patterns. Reinforcement in allopatry has been shown to occur in nature ( evidence for speciation by reinforcement), albeit with less frequency than a classic allopatric speciation event. A major difficulty arises when interpreting reinforcement's role in allopatric speciation, as current
phylogenetic In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processes, Molecular biology, molecular interactions, Physiology, physiological mechanisms, ...

patterns may suggest past gene flow. This masks possible initial divergence in allopatry and can indicate a "mixed-mode" speciation event—exhibiting both allopatric and sympatric speciation processes.

## Mathematical models

Developed in the context of the genetic basis of reproductive isolation, mathematical scenarios model both prezygotic and postzygotic isolation with respect to the effects of genetic drift, selection,
sexual selection Sexual selection is a mode of natural selection Natural selection is the differential survival and reproduction of individuals due to differences in phenotype right , Here the relation between genotype and phenotype is illustrat ...
, or various combinations of the three.
Masatoshi Nei (born January 2, 1931) is a Japanese-born American evolutionary biologist currently affiliated with the Department of Biology at Temple University as a Carnell Professor. He was, until recently, Evan Pugh Professor of Biology at Pennsylvania S ...
and colleagues were the first to develop a neutral,
stochastic Stochastic () refers to the property of being well described by a random In common parlance, randomness is the apparent or actual lack of pattern or predictability in events. A random sequence of events, symbols or steps often has no :wi ...

model of speciation by genetic drift alone. Both selection and drift can lead to postzygotic isolation, supporting the fact that two geographically separated populations can evolve reproductive isolation—sometimes occurring rapidly. Fisherian sexual selection can also lead to reproductive isolation if there are minor variations in selective pressures (such as predation risks or habitat differences) among each population. (See the Further reading section below). Mathematical models concerning reproductive isolation-by distance have shown that populations can experience increasing reproductive isolation that correlates directly with physical, geographical distance. This has been exemplified in models of
ring species In biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processes, Molecular biology, molecular interactions, Physiology, physiological mechanisms, ...

; however, it has been argued that ring species are a special case, representing reproductive isolation-by distance, and demonstrate parapatric speciation instead—as parapatric speciation represents speciation occurring along a cline.

# Other models

Various alternative models have been developed concerning allopatric speciation. Special cases of vicariant speciation have been studied in great detail, one of which is peripatric speciation, whereby a small subset of a species population becomes isolated geographically; and centrifugal speciation, an alternative model of peripatric speciation concerning expansion and contraction of a species' range. Other minor allopatric models have also been developed are discussed below.

## Peripatric

Peripatric speciation is a mode of speciation in which a new species is formed from an isolated peripheral population. If a small population of a species becomes isolated (''e.g.'' a population of birds on an oceanic island), selection can act on the population independent of the parent population. Given both geographic separation and enough time, speciation can result as a byproduct. It can be distinguished from allopatric speciation by three important features: 1) the size of the isolated population, 2) the strong selection imposed by the dispersal and colonization into novel environments, and 3) the potential effects of
genetic drift Genetic drift (allelic drift or the Sewall Wright effect) is the change in the frequency of an existing gene In biology, a gene (from ''genos'' "...Wilhelm Johannsen coined the word gene to describe the Mendelian_inheritance#History, M ...

on small populations. However, it can often be difficult for researchers to determine if peripatric speciation occurred as vicariant explanations can be invoked due to the fact that both models posit the absence of gene flow between the populations. The size of the isolated population is important because individuals colonizing a new habitat likely contain only a small sample of the genetic variation of the original population. This promotes divergence due to strong selective pressures, leading to the rapid fixation of an
allele An allele (, ; ; modern formation from Greek ἄλλος ''állos'', "other") is one of two, or more, forms of a given gene In biology, a gene (from ''genos'' "...Wilhelm Johannsen coined the word gene to describe the Mendelian_inheritance ...
within the descendant population. This gives rise to the potential for genetic incompatibilities to evolve. These incompatibilities cause reproductive isolation, giving rise to rapid speciation events. Models of peripatry are supported mostly by species distribution patterns in nature. Oceanic islands and
archipelago An archipelago ( ), sometimes called an island group or island chain, is a chain, cluster or collection of island An island (or isle) is an isolated piece of habitat that is surrounded by a dramatically different habitat, such as ...

s provide the strongest empirical evidence that peripatric speciation occurs.

## Centrifugal

Centrifugal speciation is a variant, alternative model of peripatric speciation. This model contrasts with peripatric speciation by virtue of the origin of the genetic novelty that leads to reproductive isolation. When a population of a species experiences a period of geographic range expansion and contraction, it may leave small, fragmented, peripherally isolated populations behind. These isolated populations will contain samples of the genetic variation from the larger parent population. This variation leads to a higher likelihood of ecological niche specialization and the evolution of reproductive isolation. Centrifugal speciation has been largely ignored in the scientific literature. Nevertheless, a wealth of evidence has been put forth by researchers in support of the model, much of which has not yet been refuted. One example is the possible
center of origin A center of origin (or center of diversity) is a geographical area where a group of organisms, either domesticated or wild, first developed its distinctive properties. They are also considered centers of diversity. Centers of origin were first ...
in the
Indo-West Pacific The Indo-Pacific, sometimes known as the Indo–West Pacific or Indo–Pacific Asia, is a biogeographic region of Earth Earth is the third planet from the Sun and the only astronomical object known to harbor life. About 29% of Earth's su ...
.

## Microallopatric

Microallopatry refers to allopatric speciation occurring on a small geographic scale. Examples of microallopatric speciation in nature have been described. Rico and Turner found intralacustrine allopatric divergence of '''' (''Maylandia callainos'') within
Lake Malawi Lake Malawi, also known as Lake Nyasa in Tanzania and Lago Niassa in Mozambique, is an African Great Lakes, African Great Lake and the southernmost lake in the East African Rift system, located between Malawi, Mozambique and Tanzania. It is th ...

separated only by 35 meters. Gustave Paulay found evidence that species in the subfamily Cryptorhynchinae have microallopatrically speciated on Rapa and its surrounding
islet An islet is a very small island An island (or isle) is an isolated piece of habitat that is surrounded by a dramatically different habitat, such as water. Very small islands such as emergent land features on atoll An atoll ( ...

s. A sympatrically distributed triplet of
diving beetle The Dytiscidae – based on the Greek ''dytikos'' (δυτικός), "able to dive" – are the predaceous diving beetles, a family In , family (from la, familia) is a of people related either by (by recognized birth) or (by mar ...

('' Paroster'') species living in aquifers of Australia's Yilgarn region have likely speciated microallopatrically within a 3.5 km2 area. The term was originally proposed by Hobart M. Smith to describe a level of geographic resolution. A sympatric population may exist in low resolution, whereas viewed with a higher resolution (''i.e.'' on a small, localized scale within the population) it is "microallopatric". Ben Fitzpatrick and colleagues contend that this original definition, "is misleading because it confuses geographical and ecological concepts".

## Modes with secondary contact

Ecological speciation can occur allopatrically, sympatrically, or parapatrically; the only requirement being that it occurs as a result of adaptation to different ecological or micro-ecological conditions. Ecological allopatry is a reverse-ordered form of allopatric speciation in conjunction with
reinforcement In behavioral psychology Behaviorism is a systematic approach to understanding the behavior of humans and other animals. It assumes that behavior is either a reflex evoked by the pairing of certain antecedent (behavioral psychology), anteced ...
. First, divergent selection separates a non-allopatric population emerging from pre-zygotic barriers, from which genetic differences evolve due to the obstruction of complete gene flow. The terms allo-parapatric and allo-sympatric have been used to describe speciation scenarios where divergence occurs in allopatry but speciation occurs only upon secondary contact. These are effectively models of reinforcement or "mixed-mode" speciation events.

# Observational evidence

As allopatric speciation is widely accepted as a common mode of speciation, the scientific literature is abundant with studies documenting its existence. The biologist
Ernst Mayr Ernst Walter Mayr (; 5 July 1904 – 3 February 2005) was one of the 20th century's leading evolutionary biologists File:Francesco Redi.jpg, Francesco Redi, the founder of biology, is recognized to be one of the greatest biologists of all ti ...
was the first to summarize the contemporary literature of the time in 1942 and 1963. Many of the examples he set forth remain conclusive; however, modern research supports geographic speciation with molecular phylogenetics—adding a level of robustness unavailable to early researchers. The most recent thorough treatment of allopatric speciation (and speciation research in general) is
Jerry Coyne Jerry Allen Coyne (born December 30, 1949) is an American biologist known for his work on speciation and his commentary on intelligent design. A prolific scientist and author, he has published numerous papers elucidating the theory of evolution. H ...

and H. Allen Orr's 2004 publication ''Speciation''. They list six mainstream arguments that lend support to the concept of vicariant speciation: *Closely related species pairs, more often than not, reside in geographic ranges adjacent to one another, separated by a geographic or climatic barrier. *Young species pairs (or sister species) often occur in allopatry, even without a known barrier. *In occurrences where several pairs of related species share a range, they are distributed in abutting patterns, with borders exhibiting zones of hybridization. *In regions where geographic isolation is doubtful, species do not exhibit sister pairs. *Correlation of genetic differences between an array of distantly related species that correspond to known current or historical geographic barriers. *Measures of reproductive isolation increase with the greater geographic distance of separation between two species pairs. (This has been often referred to as reproductive isolation by distance.)

## Endemism

Allopatric speciation has resulted in many of the biogeographic and biodiversity patterns found on Earth: on islands, continents, and even among mountains. Islands are often home to species
endemics Endemism is the state of a species In biology, a species is the basic unit of biological classification, classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest grou ...
—existing only on an island and nowhere else in the world—with nearly all taxa residing on isolated islands sharing common ancestry with a species on the nearest continent. Not without challenge, there is typically a correlation between island endemics and
diversity Diversity, diversify, or diverse may refer to: Business *Diversity (business) The "business case for diversity" stems from the progression of the models of diversity within the workplace since the 1960s. The original model for diversity was situ ...

; that is, that the greater the diversity (species richness) of an island, the greater the increase in endemism. Increased diversity effectively drives speciation. Furthermore, the number of endemics on an island is directly correlated with the relative isolation of the island and its area. In some cases, speciation on islands has occurred rapidly. Dispersal and ''in situ'' speciation are the agents that explain the origins of the organisms in Hawaii. Various geographic modes of speciation have been studied extensively in Hawaiian biota, and in particular,
angiosperm Flowering plants include multiple members of the clade Angiospermae (), commonly called angiosperms. The term "angiosperm" is derived from the Greek#REDIRECT Greek Greek may refer to: Greece Anything of, from, or related to Greece Greece ...

s appear to have speciated predominately in allopatric and
parapatric In parapatric speciation, two subpopulations of a species evolve reproductive isolation from one another while continuing to exchange genes In biology Biology is the natural science that studies life and living organisms, including th ...
modes. Islands are not the only geographic locations that have endemic species. South America has been studied extensively with its areas of endemism representing assemblages of allopatrically distributed species groups. ''Charis'' butterflies are a primary example, confined to specific regions corresponding to phylogenies of other species of butterflies,
amphibian Amphibians are ectothermic, tetrapod vertebrates of the Class (biology), class Amphibia. All living amphibians belong to the group Lissamphibia. They inhabit a wide variety of habitats, with most species living within terrestrial animal, ter ...
s, birds,
marsupial Marsupials are any members of the mammal Mammals (from Latin Latin (, or , ) is a classical language A classical language is a language A language is a structured system of communication Communication (from Latin ' ...
s,
primate A primate ( ) (from Latin , from 'prime, first rank') is a eutherian mammal constituting the Taxonomy (biology), taxonomic order (biology), order Primates (). Primates arose 85–55 million years ago first from small Terrestrial animal, ...

s,
reptile Reptiles, as most commonly defined, are the animals in the class Class or The Class may refer to: Common uses not otherwise categorized * Class (biology), a taxonomic rank * Class (knowledge representation), a collection of individuals or ...

s, and
rodent Rodents (from Latin Latin (, or , ) is a classical language belonging to the Italic branch of the Indo-European languages. Latin was originally spoken in the area around Rome, known as Latium. Through the power of the Roman Republi ...

s. The pattern indicates repeated vicariant speciation events among these groups. It is thought that rivers may play a role as the geographic barriers to ''Charis'', not unlike the river barrier hypothesis used to explain the high rates of diversity in the
Amazon basin The Amazon Basin is the part of South America South America is a continent A continent is any of several large landmasses. Generally identified by convention (norm), convention rather than any strict criteria, up to seven ...

—though this hypothesis has been disputed. Dispersal-mediated allopatric speciation is also thought to be a significant driver of diversification throughout the
Neotropics The Neotropical realm is one of the eight biogeographic realm A biogeographic realm or ecozone is the broadest biogeographic Biogeography is the study of the distribution of species In biology, a species is the basic unit of bio ...
. Patterns of increased endemism at higher elevations on both islands and continents have been documented on a global level. As topographical elevation increases, species become isolated from one another; often constricted to graded zones. This isolation on "mountain top islands" creates barriers to gene flow, encouraging allopatric speciation, and generating the formation of endemic species. Mountain building (
orogeny Orogeny is the primary mechanism by which mountains are formed on continents. An orogeny is an event that takes place at a convergent plate margin when plate motion compresses the margin. This leads to both structural deformation Deformation ...
) is directly correlated with—and directly affects biodiversity. The formation of the mountains and the Qinghai–Tibetan Plateau for example have driven the speciation and diversification of numerous plants and animals such as '' Lepisorus'' ferns; glyptosternoid fishes (
Sisoridae Sisoridae is a family In human society, family (from la, familia) is a group of people related either by consanguinity (by recognized birth) or affinity (by marriage or other relationship). The purpose of families is to maintain the well ...
); and the '''' species complex. Uplift has also driven vicariant speciation in '' Macowania'' daisies in South Africa's
Drakensberg The Drakensberg (Afrikaans Alaric speaking Afrikaans. Afrikaans (, ) is a West Germanic language spoken in South Africa South Africa, officially the Republic of South Africa (RSA), is the southernmost country in Africa. With over ...

mountains, along with '' Dendrocincla'' woodcreepers in the South American
Andes The Andes, Andes Mountains or Andean Mountains ( es, Cordillera de los Andes) are the List of mountain ranges#Mountain ranges by length, longest continental mountain range in the world, forming a continuous highland along the western edge of Sou ...

. The
Laramide orogeny The Laramide orogeny was a time period of mountain building in western North America North America is a continent entirely within the Northern Hemisphere and almost all within the Western Hemisphere. It can also be described as the nort ...
during the
Late Cretaceous The Late Cretaceous (100.5–66 Ma) is the younger of two epochs into which the Cretaceous The Cretaceous ( ) is a that lasted from about 145 to 66 (Mya). It is the third and final period of the , as well as the longest. At around 79 millio ...
even caused vicariant speciation and radiations of
dinosaur Dinosaurs are a diverse group of reptiles of the clade Dinosauria. They first appeared during the Triassic Geological period, period, between 243 and 233.23 annum, million years ago, although the exact origin and timing of the evolution ...

s in North America.
Adaptive radiation In evolutionary biology Evolutionary biology is the subfield of biology Biology is the natural science that studies life and living organisms, including their anatomy, physical structure, Biochemistry, chemical processes, Molecular ...
, like the observed by
Charles Darwin Charles Robert Darwin (; ; 12 February 1809 – 19 April 1882) was an English naturalist Natural history is a domain of inquiry involving organism In biology, an organism () is any organic, life, living system that fu ...

, is often a consequence of rapid allopatric speciation among populations. However, in the case of the finches of the Galapagos, among other island radiations such as the honeycreepers of Hawaii represent cases of limited geographic separation and were likely driven by
ecological speciation Ecological speciation is a form of speciation Speciation is the evolution Evolution is change in the Heredity, heritable Phenotypic trait, characteristics of biological populations over successive generations. These characteristics are the ...
.

## Isthmus of Panama

Geological evidence supports the final closure of the
isthmus of Panama The Isthmus of Panama ( es, Istmo de Panamá), also historically known as the Isthmus of Darien (), is the narrow strip of land that lies between the Caribbean Sea The Caribbean Sea ( es, Mar Caribe; french: Mer des Caraïbes; ht, Lamè Ka ...
approximately 2.7 to 3.5 mya, with some evidence suggesting an earlier transient bridge existing between 13 and 15 mya. Recent evidence increasingly points towards an older and more complex emergence of the Isthmus, with fossil and extant species dispersal (part of the American biotic interchange) occurring in three major pulses, to and from North and South America. Further, the changes in terrestrial biotic distributions of both continents such as with ''
Eciton ''Eciton'' is a New World army ant genus that contains the most familiar species of army ants. The most predominant and well-known species is ''Eciton burchellii'', which is also more commonly known as the army ant and is considered the type spec ...
'' army ants supports an earlier bridge or a series of bridges. Regardless of the exact timing of the isthmus closer, biologists can study the species on the Pacific and Caribbean sides in what has been called, "one of the greatest natural experiments in evolution". Additionally, as with most geologic events, the closure was unlikely to have occurred rapidly, but instead dynamically—a gradual shallowing of sea water over millions of years. Studies of snapping shrimp in the genus '' Alpheus'' have provided direct evidence of an allopatric speciation event, as phylogenetic reconstructions support the relationships of 15 pairs of sister species of ''Alpheus'', each pair divided across the isthmus and
molecular clock The molecular clock is a figurative term for a technique that uses the mutation rate of biomolecules to Chronological dating, deduce the time in prehistory when two or more life forms Genetic divergence, diverged. The biomolecular data used for ...
dating supports their separation between 3 and 15 million years ago. Recently diverged species live in shallow
mangrove A mangrove is a shrub A shrub (often called a bush) is a small- to medium-sized perennial A perennial plant or simply perennial is a plant Plants are predominantly photosynthetic eukaryotes of the Kingdom (biology), kingdom Pl ...

waters while older diverged species live in deeper water, correlating with a gradual closure of the isthmus. Support for an allopatric divergence also comes from laboratory experiments on the species pairs showing nearly complete reproductive isolation. Similar patterns of relatedness and distribution across the Pacific and Atlantic sides have been found in other species pairs such as: *''
Diadema antillarum ''Diadema antillarum'', also known as the lime urchin, black sea urchin, or the long-spined sea urchin, is a species of sea urchin in the family (biology), Family Diadematidae. This sea urchin is characterized by its exceptionally long black sp ...

'' and '''' *''Echinometra lucunter'' and ''Echinometra vanbrunti'' *''Echinometra viridis'' and ''E. vanbrunti'' *''Bathygobius soporator'' and ''Bathygobius ramosus'' *''B. soporator'' and ''Bathygobius andrei'' *''Excirolana braziliensis'' and variant morphs

## Refugia

Ice ages have played important roles in facilitating speciation among vertebrate species. This concept of Refugium (population biology), refugia has been applied to numerous groups of species and their biogeographic distributions. Glaciation and subsequent retreat caused speciation in many Taiga, boreal forest birds, such as with North American sapsuckers (Yellow-bellied sapsucker, Yellow-bellied, Red-naped sapsucker, Red-naped, and Red-breasted sapsucker, Red-breasted); the warblers in the genus ''Setophaga'' (''Townsend's warbler, S. townsendii'', ''Hermit warbler, S. occidentalis'', and ''Black-throated green warbler, S. virens''), ''Oreothlypis'' (''Virginia's warbler, O. virginiae'', ''Oreothlypis ridgwayi, O. ridgwayi'', and ''Nashville warbler, O. ruficapilla''), and ''Oporornis'' (''MacGillivray's warbler, O. tolmiei'' and ''Mourning warbler, O. philadelphia'' now classified in the genus ''Geothlypis''); ''Fox sparrows'' (sub species ''sooty fox sparrow, P. (i.) unalaschensis'', ''thick-billed fox sparrow, P. (i.) megarhyncha'', and ''slate-colored fox sparrow, P. (i.) schistacea''); ''Vireo'' (''Plumbeous vireo, V. plumbeus'', ''Cassin's vireo, V. cassinii'', and ''Blue-headed vireo, V. solitarius''); ''Empidonax, tyrant flycatchers'' (''Cordilleran flycatcher, E. occidentalis'' and ''Pacific-slope flycatcher, E. difficilis''); ''Poecile, chickadees'' (''Chestnut-backed chickadee, P. rufescens'' and ''Boreal chickadee, P. hudsonicus''); and ''Catharus, thrushes'' (''Bicknell's thrush, C. bicknelli'' and ''Gray-cheeked thrush, C. minimus''). As a special case of allopatric speciation,
peripatric speciation Peripatric speciation is a mode of speciation Speciation is the evolution Evolution is change in the Heredity, heritable Phenotypic trait, characteristics of biological populations over successive generations. These characteristics are t ...
is often invoked for instances of isolation in glaciation refugia as small populations become isolated due to habitat fragmentation such as with North American red (''Picea rubens'') and black (''Picea mariana'') spruce or the prairie dogs ''Cynomys mexicanus'' and ''Cynomys ludovicianus, C. ludovicianus''.

## Superspecies

Numerous species pairs or species groups show abutting distribution patterns, that is, reside in geographically distinct regions next to each other. They often share borders, many of which contain hybrid zones. Some examples of abutting species and Species complex, superspecies (an informal rank referring to a complex of closely related allopatrically distributed species, also called ''allospecies'') include: *Western meadowlark, Western and Eastern meadowlarks in North America reside in dry western and wet eastern geographic regions with rare occurrences of hybridization, most of which results in infertile offspring. *Monarch flycatchers endemic to the Solomon Islands; a complex of several species and subspecies (Bougainville monarch, Bougainville, White-capped monarch, white-capped, and Chestnut-bellied monarch, chestnut-bellied monarchs and their related subspecies). *North American sapsuckers and members of the genus ''Setophaga'' (the hermit warbler, black-throated green warbler, and Townsend's warbler). *Sixty-six subspecies in the genus Pachycephala residing on the Melanesian islands. *Bonobos and Common chimpanzee, chimpanzees. *''Climacteris'' tree creeper birds in Australia. *Bird-of-paradise, Birds-of-paradise in the mountains of New Guinea (genus ''Astrapia''). *Red-shafted and yellow-shafted Northern flicker, flickers; black-headed grosbeaks and rose-breasted grosbeaks; Baltimore orioles and Bullock's orioles; and the Lazuli bunting, lazuli and indigo buntings. All of these species pairs connect at zones of hybridization that correspond with major geographic barriers. *''Dugesia'' flatworms in Europe, Asia, and the Mediterranean regions. In birds, some areas are prone to high rates of superspecies formation such as the 105 superspecies in Melanesia, comprising 66 percent of all bird species in the region. Patagonia is home to 17 superspecies of forest birds, while North America has 127 superspecies of both land and freshwater birds. Sub-Saharan Africa has 486 passerine birds grouped into 169 superspecies. Australia has numerous bird superspecies as well, with 34 percent of all bird species grouped into superspecies.

# Laboratory evidence

Experiments on allopatric speciation are often complex and do not simply divide a species population into two. This is due to a host of defining parameters: measuring reproductive isolation, sample sizes (the number of matings conducted in reproductive isolation tests), bottlenecks, length of experiments, number of generations allowed, or insufficient genetic diversity. Various isolation indices have been developed to measure reproductive isolation (and are often employed in laboratory speciation studies) such as here (index $Y$ and index $I$): $Y=$ $I=$ Here, $A$ and $D$ represent the number of Heterogametic sex, matings in heterogameticity where $B$ and $C$ represent Heterogametic sex, homogametic matings. $A$ and $B$ is one population and $D$ and $C$ is the second population. A negative value of $Y$ denotes negative assortive mating, a positive value denotes positive assortive mating (i. e. expressing reproductive isolation), and a Null (mathematics), null value (of zero) means the populations are experiencing Panmixia, random mating. The experimental evidence has solidly established the fact that reproductive isolation evolves as a by-product of selection. Reproductive isolation has been shown to arise from pleiotropy (''i.e.'' indirect selection acting on genes that code for more than one trait)—what has been referred to as genetic hitchhiking. Limitations and controversies exist relating to whether laboratory experiments can accurately reflect the long-scale process of allopatric speciation that occurs in nature. Experiments often fall beneath 100 generations, far less than expected, as Speciation in the fossil record, rates of speciation in nature are thought to be much larger. Furthermore, rates specifically concerning the evolution of reproductive isolation in ''Drosophila'' are significantly higher than what is practiced in laboratory settings. Using index ''Y'' presented previously, a survey of 25 allopatric speciation experiments (included in the table below) found that reproductive isolation was not as strong as typically maintained and that laboratory environments have not been well-suited for modeling allopatric speciation. Nevertheless, numerous experiments have shown pre-zygotic and post-zygotic isolation in vicariance, some in less than 100 generations. Below is a non-exhaustive table of the laboratory experiments conducted on allopatric speciation. The first column indicates the species used in the referenced study, where the "Trait" column refers to the specific characteristic selected for or against in that species. The "Generations" column refers to the number of generations in each experiment performed. If more than one experiment was formed generations are separated by semicolons or dashes (given as a range). Some studies provide a duration in which the experiment was conducted. The "Selection type" column indicates if the study modeled vicariant or peripatric speciation (this may not be explicitly). Directional selection, Direct selection refers to selection imposed to promote reproductive isolation whereas indirect selection implies isolation occurring as a pleiotropic byproduct of natural selection; whereas divergent selection implies deliberate selection of each allopatric population in opposite directions (''e.g.'' one line with more bristles and the other line with less). Some studies performed experiments modeling or controlling for genetic drift. Reproductive isolation occurred pre-zygotically, post-zygotically, both, or not at all. It is important to note that many of the studies conducted contain multiple experiments within—a resolution of which this table does not reflect.

# History and research techniques

Early speciation research typically reflected geographic distributions and were thus termed geographic, semi-geographic, and non-geographic. Geographic speciation corresponds to today's usage of the term allopatric speciation, and in 1868, Moritz Wagner was the first to propose the concept of which he used the term ''Separationstheorie''. His idea was later interpreted by
Ernst Mayr Ernst Walter Mayr (; 5 July 1904 – 3 February 2005) was one of the 20th century's leading evolutionary biologists File:Francesco Redi.jpg, Francesco Redi, the founder of biology, is recognized to be one of the greatest biologists of all ti ...
as a form of founder effect speciation as it focused primarily on small geographically isolated populations. Edward Bagnall Poulton, an evolutionary biologist and a strong proponent of the importance of natural selection, highlighted the role of geographic isolation in promoting speciation, in the process coining the term "sympatric speciation" in 1903. Controversy exists as to whether
Charles Darwin Charles Robert Darwin (; ; 12 February 1809 – 19 April 1882) was an English naturalist Natural history is a domain of inquiry involving organism In biology, an organism () is any organic, life, living system that fu ...

recognized a true geographical-based model of speciation in his publication of the ''On the Origin of Species, Origin of Species''. In chapter 11, "Geographical Distribution", Darwin discusses geographic barriers to migration, stating for example that "barriers of any kind, or obstacles to free migration, are related in a close and important manner to the differences between the productions of various regions [of the world]". F. J. Sulloway contends that Darwin's position on speciation was "misleading" at the least and may have later misinformed Wagner and David Starr Jordan into believing that Darwin viewed sympatric speciation as the most important mode of speciation. Nevertheless, Darwin never fully accepted Wagner's concept of geographical speciation. David Starr Jordan played a significant role in promoting allopatric speciation in the early 20th century, providing a wealth of evidence from nature to support the theory. Much later, the biologist Ernst Mayr was the first to encapsulate the then contemporary literature in his 1942 publication ''Systematics and the Origin of Species, Systematics and the Origin of Species, from the Viewpoint of a Zoologist'' and in his subsequent 1963 publication ''Animal Species and Evolution''. Like Jordan's works, they relied on direct observations of nature, documenting the occurrence of allopatric speciation, of which is widely accepted today. Prior to this research, Theodosius Dobzhansky published ''Genetics and the Origin of Species'' in 1937 where he formulated the genetic framework for how speciation could occur. Other scientists noted the existence of allopatrically distributed pairs of species in nature such as Joel Asaph Allen (who coined the term "Jordan's Law", whereby closely related, geographically isolated species are often found divided by a physical barrier) and Robert Greenleaf Leavitt; however, it is thought that Wagner, Karl Jordan, and David Starr Jordan played a large role in the formation of allopatric speciation as an evolutionary concept; where Mayr and Dobzhansky contributed to the formation of the modern synthesis (20th century), modern evolutionary synthesis. The late 20th century saw the development of mathematical models of allopatric speciation, leading to the clear theoretical plausibility that geographic isolation can result in the reproductive isolation of two populations. Since the 1940s, allopatric speciation has been accepted. Today, it is widely regarded as the most common form of speciation taking place in nature. However, this is not without controversy, as both parapatric and sympatric speciation are both considered tenable modes of speciation that occur in nature. Some researchers even consider there to be a bias in reporting of positive allopatric speciation events, and in one study reviewing 73 speciation papers published in 2009, only 30 percent that suggested allopatric speciation as the primary explanation for the patterns observed considered other modes of speciation as possible. Contemporary research relies largely on multiple lines of evidence to determine the mode of a speciation event; that is, determining patterns of geographic distribution in conjunction with phylogenetic relatedness based on molecular techniques. This method was effectively introduced by John D. Lynch in 1986 and numerous researchers have employed it and similar methods, yielding enlightening results. Correlation of geographic distribution with phylogenetic data also spawned a sub-field of biogeography called vicariance biogeography developed by Joel Cracraft, James Brown (ecologist), James Brown, Mark V. Lomolino, among other biologists specializing in ecology and biogeography. Similarly, full analytical approaches have been proposed and applied to determine which speciation mode a species underwent in the past using various approaches or combinations thereof: species-level phylogenies, range overlaps, symmetry in range sizes between sister species pairs, and Biological dispersal, species movements within geographic ranges. Molecular clock dating methods are also often employed to accurately gauge divergence times that reflect the fossil or geological record (such as with the snapping shrimp separated by the closure of the Isthmus of Panama or speciation events within the genus ''Cyclamen''). Other techniques used today have employed measures of gene flow between populations, Environmental niche modelling, ecological niche modelling (such as in the case of the Myrtle warbler, Myrtle and Audubon's warblers or the environmentally-mediated speciation taking place among Poison dart frog, dendrobatid frogs in Ecuador), and statistical testing of monophyletic groups. Biotechnology, Biotechnological advances have allowed for large scale, multi-Locus (genetics), locus genome comparisons (such as with the possible allopatric speciation event that occurred between ancestral humans and chimpanzees), linking species' evolutionary history with ecology and clarifying phylogenetic patterns.