Prochlorococcus

''Prochlorococcus'' is a genus of very small (0.6  μm) marine cyanobacteria with an unusual pigmentation ( chlorophyll ''a2'' and ''b2''). These bacteria belong to the photosynthetic picoplankton and are probably the most abundant photosynthetic organism on Earth. ''Prochlorococcus'' microbes are among the major primary producers in the ocean, responsible for a large percentage of the photosynthetic production of oxygen. ''Prochlorococcus'' strains, called ecotypes, have physiological differences enabling them to exploit different ecological niches. Analysis of the genome sequences of ''Prochlorococcus'' strains show that 1,273 genes are common to all strains, and the average genome size is about 2,000 genes. In contrast, eukaryotic algae have over 10,000 genes.

The genus and the type species were made validly published names under the ICNP in 2001 with ''Validation list no. 79''. They became valid under the ICNafp in 2020 with the description of Komárek et al.

Discovery

Although there had been several earlier records of very small chlorophyll-''b''-containing cyanobacteria in the ocean, ''Prochlorococcus'' was discovered in 1986 by Sallie W. (Penny) Chisholm of the Massachusetts Institute of Technology, Robert J. Olson of the Woods Hole Oceanographic Institution, and other collaborators in the Sargasso Sea using flow cytometry. Chisholm was awarded the Crafoord Prize in 2019 for the discovery. The first culture of ''Prochlorococcus'' was isolated in the Sargasso Sea in 1988 ( strain SS120) and shortly another strain was obtained from the Mediterranean Sea (strain MED). The name ''Prochlorococcus'' originated from the fact it was originally assumed that ''Prochlorococcus'' was related to '' Prochloron'' and other chlorophyll-''b''-containing bacteria, called prochlorophytes, but it is now known that prochlorophytes form several separate phylogenetic groups within the cyanobacteria subgroup of the bacteria domain. The only species within the genus described is ''Prochlorococcus marinus'', although two subspecies have been named for low-light and high-light adapted niche variations.

Morphology

Marine cyanobacteria are to date the smallest known photosynthetic organisms; ''Prochlorococcus'' is the smallest at just 0.5 to 0.7 micrometres in diameter. The coccoid shaped cells are non-motile and free-living. Their small size and large surface-area-to-volume ratio, gives them an advantage in nutrient-poor water. Still, it is assumed that ''Prochlorococcus'' have a very small nutrient requirement. Moreover, ''Prochlorococcus'' have adapted to use sulfolipids instead of phospholipids in their membranes to survive in phosphate deprived environments. This adaptation allows them to avoid competition with heterotrophs that are dependent on phosphate for survival. Typically, ''Prochlorococcus'' divide once a day in the subsurface layer or oligotrophic waters.

Distribution

''Prochlorococcus'' is abundant in the euphotic zone of the world's tropical oceans. It is possibly the most plentiful genus on Earth: a single millilitre of surface seawater may contain 100,000 cells or more. Worldwide, the average yearly abundance is individuals (for comparison, that is approximately the number of atoms in a ton of gold). ''Prochlorococcus'' is ubiquitous between 40°N and 40°S and dominates in the oligotrophic (nutrient-poor) regions of the oceans. ''Prochlorococcus'' is mostly found in a temperature range of 10–33 °C and some strains can grow at depths with low light (<1% surface light). These strains are known as LL (Low Light) ecotypes, with strains that occupy shallower depths in the water column known as HL (High Light) ecotypes. Furthermore, ''Prochlorococcus'' are more plentiful in the presence of heterotrophs that have catalase abilities. ''Prochlorococcus'' do not have mechanisms to degrade reactive oxygen species and rely on heterotrophs to protect them. The bacterium accounts for an estimated 13–48% of the global photosynthetic production of oxygen, and forms part of the base of the ocean food chain.

Pigments

''Prochlorococcus'' is closely related to '' Synechococcus,'' another abundant photosynthetic cyanobacteria, which contains the light-harvesting antennae phycobilisomes. However, ''Prochlorochoccus'' has evolved to use a unique light-harvesting complex, consisting predominantly of divinyl derivatives of chlorophyll a (Chl a2) and chlorophyll b (Chl b2) and lacking monovinyl chlorophylls and phycobilisomes. ''Prochlorococcus'' is the only known wild-type oxygenic phototroph that does not contain Chl a as a major photosynthetic pigment, and is the only known prokaryote with α-carotene.

Genome

The genomes of several strains of ''Prochlorococcus'' have been sequenced. Twelve complete genomes have been sequenced which reveal physiologically and genetically distinct lineages of ''Prochlorococcus marinus'' that are 97% similar in the 16S rRNA gene. Research has shown that a massive genome reduction occurred during the Neoproterozoic Snowball Earth, which was followed by population bottlenecks.

The high-light ecotype has the smallest genome (1,657,990 basepairs, 1,716 genes) of any known oxygenic phototroph, but the genome of the low-light type is much larger (2,410,873 base pairs, 2,275 genes).

DNA recombination, repair and replication

Marine ''Prochlorococcus'' cyanobacteria have several genes that function in DNA recombination, repair and replication. These include the '' recBCD'' gene complex whose product, exonuclease V, functions in recombinational repair of DNA, and the ''umuCD'' gene complex whose product, DNA polymerase V, functions in error-prone DNA replication. These cyanobacteria also have the gene ''lexA'' that regulates an SOS response system, probably a system like the well-studied ''E. coli'' SOS system that is employed in the response to DNA damage.

Ecology

Ancestors of ''Prochlorococcus'' contributed to the production of early atmospheric oxygen. Despite ''Prochlorococcus'' being one of the smallest types of marine phytoplankton in the world's oceans, its substantial number make it responsible for a major part of the oceans', world's photosynthesis, and oxygen production. The size of ''Prochlorococcus'' (0.5 to 0.7 μm) and the adaptations of the various ecotypes allow the organism to grow abundantly in low nutrient waters such as the waters of the tropics and the subtropics (c. 40°N to 40°S); however, they can be found in higher latitudes as high up as 60° north but at fairly minimal concentrations and the bacteria's distribution across the oceans suggest that the colder waters could be fatal. This wide range of latitude along with the bacteria's ability to survive up to depths of 100 to 150 metres, i.e. the average depth of the mixing layer of the surface ocean, allows it to grow to enormous numbers, up to individuals worldwide. This enormous number makes the ''Prochlorococcus'' play an important role in the global carbon cycle and oxygen production. Along with '' Synechococcus'' (another genus of cyanobacteria that co-occurs with ''Prochlorococcus'') these cyanobacteria are responsible for approximately 50% of marine carbon fixation, making it an important carbon sink via the biological carbon pump (i.e. the transfer of organic carbon from the surface ocean to the deep via several biological, physical and chemical processes). The abundance, distribution and all other characteristics of the ''Prochlorococcus'' make it a key organism in oligotrophic waters serving as an important primary producer to the open ocean food webs.

Ecotypes

''Prochlorococcus'' has different "ecotypes" occupying different niches and can vary by pigments, light requirements, nitrogen and phosphorus utilization, copper, and virus sensitivity. It is thought that ''Prochlorococcus'' may occupy potentially 35 different ecotypes and sub-ecotypes within the worlds' oceans. They can be differentiated on the basis of the sequence of the ribosomal RNA gene. It has been broken down by NCBI Taxonomy into two different subspecies, Low-light Adapted (LL) or High-light Adapted (HL). There are six clades within each subspecies.

Low-light adapted

''Prochlorococcus marinus'' subsp. ''marinus'' is associated with low-light adapted types. It is also further classified by sub-ecotypes LLI-LLVII, where LLII/III has not been yet phylogenetically uncoupled. LV species are found in highly iron scarce locations around the equator, and as a result, have lost several ferric proteins. The low-light adapted subspecies is otherwise known to have a higher ratio of chlorophyll b2 to chlorophyll a2, which aids in its ability to absorb blue light. Blue light is able to penetrate ocean waters deeper than the rest of the visible spectrum, and can reach depths of >200 m, depending on the turbidity of the water. Their ability to photosynthesize at a depth where blue light penetrates allows them to inhabit depths between 80 and 200 m. Their genomes can range from 1,650,000 to 2,600,000 basepairs in size.

High-light adapted

''Prochlorococcus marinus'' subsp. ''pastoris'' is associated with high-light adapted types. It can be further classified by sub-ecotypes HLI-HLVI. HLIII, like LV, is also located in an iron-limited environment near the equator, with similar ferric adaptations. The high-light adapted subspecies is otherwise known to have a low ratio of chlorophyll b2 to chlorophyll a2. High-light adapted strains inhabit depths between 25 and 100 m. Their genomes can range from 1,640,000 to 1,800,000 basepairs in size.

Metabolism

Most cyanobacterium are known to have an incomplete tricarboxylic acid cycle (TCA). In this process, 2-oxoglutarate decarboxylase (2OGDC) and succinic semialdehyde dehydrogenase (SSADH), replace the enzyme 2-oxoglutarate dehydrogenase (2-OGDH). Normally, when this enzyme complex joins with NADP+, it can be converted to succinate from 2-oxoglutarate (2-OG). This pathway is non-functional in ''Prochlorococcus'', as succinate dehydrogenase has been lost evolutionarily to conserve energy that may have otherwise been lost to phosphate metabolism.

Strains

Table modified from

See also

* Photosynthetic picoplankton
* '' Pelagibacter''
* '' Synechococcus''

References

Further reading

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External links

The Most Important Microbe You've Never Heard Of
NPR Story on ''Prochlorococcus''

{{Taxonbar, from=Q18645284, from2=Q310210

Synechococcales
Environmental microbiology
Monotypic bacteria genera
Cyanobacteria genera
Marine microorganisms