Polycomb Group Proteins
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Polycomb-group proteins (PcG proteins) are a family of protein complexes first discovered in fruit flies that can remodel chromatin such that
epigenetic In biology, epigenetics is the study of stable phenotypic changes (known as ''marks'') that do not involve alterations in the DNA sequence. The Greek prefix '' epi-'' ( "over, outside of, around") in ''epigenetics'' implies features that are "o ...
silencing of genes takes place. Polycomb-group proteins are well known for silencing Hox genes through modulation of chromatin structure during
embryonic development An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm ...
in fruit flies ('' Drosophila melanogaster''). They derive their name from the fact that the first sign of a decrease in PcG function is often a homeotic transformation of posterior legs towards anterior legs, which have a characteristic comb-like set of bristles.


In insects

In '' Drosophila'', the
Trithorax-group Trithorax-group proteins (TrxG) are a heterogeneous collection of proteins whose main action is to maintain gene expression. They can be categorized into three general classes based on molecular function: # histone-modifying TrxG proteins # chromat ...
(trxG) and Polycomb-group (PcG) proteins (They derive their name from the fact that the first sign of a decrease in PcG function is often a homeotic transformation of posterior legs towards anterior legs, which have a characteristic comb-like set of bristles) act antagonistically and interact with chromosomal elements, termed Cellular Memory Modules (CMMs). Trithorax-group (trxG) proteins maintain the active state of gene expression while the Polycomb-group (PcG) proteins counteract this activation with a repressive function that is stable over many cell generations and can only be overcome by germline differentiation processes. Polycomb Gene complexes or PcG silencing consist of at least three kinds of multiprotein complex Polycomb Repressive Complex 1 (PRC1), PRC2 and PhoRC. These complexes work together to carry out their repressive effect. PcGs proteins are evolutionarily conserved and exist in at least two separate protein complexes; the PcG repressive complex 1 (PRC1) and the PcG repressive complex 2–4 (PRC2/3/4). PRC2 catalyzes trimethylation of lysine 27 on histone H3 (H3K27me2/3), while PRC1 mono- ubiquitinates histone H2A on lysine 119 (H2AK119Ub1).


In mammals

In mammals Polycomb Group gene expression is important in many aspects of development like homeotic gene regulation and X chromosome inactivation, being recruited to the inactive X by Xist RNA, the master regulator of XCI or embryonic stem cell self-renewal. The Bmi1 polycomb ring finger protein promotes neural stem cell self-renewal. Murine null mutants in PRC2 genes are embryonic lethals while most PRC1 mutants are live born homeotic mutants that die perinatally. In contrast overexpression of PcG proteins correlates with the severity and invasiveness of several cancer types. The mammalian PRC1 core complexes are very similar to Drosophila. Polycomb Bmi1 is known to regulate ink4 locus (p16Ink4a, p19Arf). Regulation of Polycomb-group proteins at bivalent chromatin sites is performed by SWI/SNF complexes, which oppose the accumulation of Polycomb complexes through ATP-dependent eviction.


In plants

In '' Physcomitrella patens'' the PcG protein FIE is specifically expressed in
stem cell In multicellular organisms, stem cells are undifferentiated or partially differentiated cells that can differentiate into various types of cells and proliferate indefinitely to produce more of the same stem cell. They are the earliest type o ...
s such as the unfertilized
egg cell The egg cell, or ovum (plural ova), is the female reproductive cell, or gamete, in most anisogamous organisms (organisms that reproduce sexually with a larger, female gamete and a smaller, male one). The term is used when the female gamete is ...
. Soon after fertilisation the FIE gene is inactivated in the young
embryo An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male spe ...
. The Polycomb gene FIE is expressed in unfertilised egg cells of the moss Physcomitrella patens and expression ceases after fertilisation in the developing diploid sporophyte. It has been shown that unlike in mammals the PcG are necessary to keep the cells in a differentiated state. Consequently, loss of PcG causes de-differentiation and promotes embryonic development. Polycomb-group proteins also intervene in the control of flowering by silencing the Flowering Locus C gene. This gene is a central part of the pathway that inhibits flowering in plants and its silencing during winter is suspected to be one of the main factors intervening in plant vernalization.


See also

* PRC1 * PRC2 * PHC1 * PHC2 * Heterochromatin protein 1 (Cbx) * BMI1 *
PCGF1 Polycomb group RING finger protein 1, PCGF1, also known as NSPC1 or RNF68 is a RING finger domain protein that in humans is encoded by the ''PCGF1'' gene. PCGF1 is a component defining the non-canonical Polycomb repressive complex 1, polycomb repr ...
, KDM2B *
PCGF2 Polycomb group RING finger protein 2, PCGF2, also known as MEL18 or RNF110, is a protein that in humans is encoded by the ''PCGF2'' gene. Function The protein encoded by this gene contains a RING finger motif. PCGF2 is a component of the canon ...
(Polycomb group RING finger protein 2) ortolog Bmi1 * RYBP * RING1 *
SUV39H1 Histone-lysine N-methyltransferase SUV39H1 is an enzyme that in humans is encoded by the ''SUV39H1'' gene. Function This gene is a member of the suppressor of variegation 3-9 homolog family and encodes a protein with a chromodomain and a C-ter ...
(histone-lysine N-methyltransferase) *
L3mbtl2 Lethal(3)malignant brain tumor-like 2 protein is a protein that in humans is encoded by the ''L3MBTL2'' gene. Model organisms Model organisms have been used in the study of L3MBTL2 function. A conditional knockout mouse line called ''L3mbtl2tm2 ...
* EZH2 (Enhancer of Zeste Homolog 2) * EED * SUZ12 (Suppressor of Zeste 12) *
Jarid2 Protein Jumonji is a protein that in humans is encoded by the ''JARID2'' gene. JARID2 is a member of the alpha-ketoglutarate-dependent hydroxylase superfamily. Jarid2 (jumonji, AT rich interactive domain 2) is a protein coding gene that function ...
(jumonji, AT rich interactive domain 2) * RE1-silencing transcription factor (REST) * RNF2 * CBFβ * YY1 * Bivalent chromatin


References


Further reading

* * * * * * *


External links

*
The Polycomb and Trithorax page of the Cavalli lab
This page contains useful information on Polycomb and trithorax proteins, in the form of an introduction, links to published reviews, list of Polycomb and trithorax proteins, illustrative power point slides and a link to a genome browser showing the genome-wide distribution of these proteins in ''Drosophila melanogaster''.

in the Homeobox Genes DataBase

in The Interactive Fly * {{MeshName, polycomb+group+proteins Protein families Drosophila melanogaster genes Nuclear organization