Phoma Clematidina
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''Calophoma clematidina'' is a fungal plant pathogen and the most common cause of the disease clematis wilt affecting large-flowered varieties of ''
Clematis ''Clematis'' is a genus of about 300 species within the buttercup family, Ranunculaceae. Their garden hybrids have been popular among gardeners, beginning with ''Clematis'' × ''jackmanii'', a garden standby since 1862; more hybrid cultivars ...
''. Symptoms of infection include leaf spotting, wilting of leaves, stems or the whole plant and internal blackening of the stem, often at soil level.van de Graaf P. (1999). ''Biology and Control of Phoma clematidina, causal Agent of Clematis Wilt''. PhD thesis, University of Derby, Derby, UK. Infected plants growing in containers may also develop root rot. 3, 3·7·67.


Taxonomy

The asexual stage (
anamorph In mycology, the terms teleomorph, anamorph, and holomorph apply to portions of the life cycles of fungi in the phyla Ascomycota and Basidiomycota: *Teleomorph: the sexual reproductive stage (morph), typically a fruiting body. *Anamorph: an ase ...
) of the fungus was first described by the German botanist and mycologist
Felix von Thümen Felix Karl Albert Ernst Joachim Freiherr von Thümen (6 February 1839, Dresden – 13 October 1892 Teplitz-Schönau) was a German botanist and mycologist. Life Felix von Thümen graduated from the Gymnasium in Dresden and entered the Prussian ar ...
in 1880 as ''
Ascochyta ''Ascochyta'' is a genus of ascomycete fungi, containing several species that are pathogenic to plants, particularly cereal crops. The taxonomy of this genus is still incomplete. The genus was first described in 1830 by Marie-Anne Libert, who r ...
clematidina''. Based on new scientific insights into the differences in spore formation between species, it was reclassified as ''
Phoma ''Phoma'' is a genus of common coelomycetous soil fungi. It contains many plant pathogenic species. Description Spores are colorless and unicellular. The pycnidia are black and depressed in the tissues of the host. ''Phoma'' is arbitrarily lim ...
clematidina'' by the Dutch mycologist Gerhard Boerema in 1978. Boerema G.H. and Dorenbosch M.M.J. (1979). "Mycologisch taxonomisch onderzoek". ''Verslagen en Mededelingen Plantenziektenkundige Dienst Wageningen'' 153 (Jaarboek 1978): 17-21. More recently, multi-locus phylogenetic analyses led to the fungus being reclassified again as ''Calophoma clematidina''.
Genetic sequencing Genetic Sequencing may refer to: * DNA sequencing * Whole genome sequencing Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, is the process of determining the entiret ...
has suggested that ''Calophoma clematidina'' is
heterothallic Heterothallic species have sexes that reside in different individuals. The term is applied particularly to distinguish heterothallic fungi, which require two compatible partners to produce sexual spores, from homothallic ones, which are capable of ...
which means that two compatible strains (
mating type Mating types are the microorganism equivalent to sexes in multicellular lifeforms and are thought to be the ancestor to distinct Sex, sexes. They also occur in macro-organisms such as fungi. Definition Mating types are the microorganism equivalent ...
s) of the fungus would need to come together under the right environmental conditions to produce a sexual stage (
teleomorph In mycology, the terms teleomorph, anamorph, and holomorph apply to portions of the life cycles of fungi in the phyla Ascomycota and Basidiomycota: *Teleomorph: the sexual reproductive stage (morph), typically a fruiting body. *Anamorph: an ase ...
). Both mating types of ''Calophoma clematidina'' are known to occur in Europe, and yet no sexual stage (which is most likely to be a ''Didymella'' species) has ever been described. Molecular phylogenetic analyses have revealed that some fungal isolates recovered from wild ''Clematis'' species, previously identified as ''Calophoma/Phoma clematidina'', are in fact two closely related species of ''Phoma'' and ''Ascochyta'' with sexual stages in ''Didymella''. ''Didymella clematidi'' has been successfully used as a
biological control Biological control or biocontrol is a method of controlling pests, such as insects, mites, weeds, and plant diseases, using other organisms. It relies on predation, parasitism, herbivory, or other natural mechanisms, but typically also invo ...
agent of ''
Clematis vitalba ''Clematis vitalba'' (also known as old man's beard and traveller's joy) is a shrub of the family Ranunculaceae. Description ''Clematis vitalba'' is a climbing shrub with branched, grooved stems, deciduous leaves, and scented greeny-white flo ...
'', which is seen as an
invasive plant An invasive species otherwise known as an alien is an introduced organism that becomes overpopulated and harms its new environment. Although most introduced species are neutral or beneficial with respect to other species, invasive species ad ...
in New Zealand. . Unlike ''Calophoma clematidina'', the two closely related ''Didymella'' species (and their anamorphs) have not been found on large-flowered ''Clematis'' varieties. The previous misidentification of these species means that some literature referring to ''Calophoma clematidina'' or ''Phoma clematidina'', particularly that on the biological control of '' C. vitalba'', is actually describing work on ''Didymella clematidis'' and its ''Ascochyta'' anamorph. The situation is further complicated by the existence of another ''Calophoma'' species known to infect ''Clematis'': ''Calophoma clematidis-rectae'' (syn. ''
Coniothyrium ''Coniothyrium'' is a genus of fungi in the family Phaeosphaeriaceae. The genus was circumscribed by Czech mycologist August Carl Joseph Corda August Carl Joseph Corda (1809–1849) was a Czech physician and mycologist. This botanist is denoted ...
clematidis-rectae''). This species is closely related to ''C. clematidina'' and has in the past been implicated in cases of clematis wilt in the Netherlands. Blok I. (1965). "Verwelkingsziekte in clematis". ''Jaarboek Proefstation voor de Boomkwekerij te Boskoop 1964'': 82-87.


Biology

The biology of ''Calophoma clematidina'' is now reasonably well understood thanks to research into clematis wilt at the
University of Canterbury The University of Canterbury ( mi, Te Whare Wānanga o Waitaha; postnominal abbreviation ''Cantuar.'' or ''Cant.'' for ''Cantuariensis'', the Latin name for Canterbury) is a public research university based in Christchurch, New Zealand. It was ...
in New Zealand Smith G.R. (1987). ''Leaf Spot and Wilt of Clematis caused by Phoma clematidina (Thum.) Boerema''. PhD thesis, University of Canterbury, Christchurch, New Zealand and the
University of Derby , mottoeng = Experience is the best teacher , established = 1851 – Teacher Training College1992 – gained university status , type = Public , chancellor = William Cavendish, Ear ...
and ADAS in the UK. A full overview of its life cycle was first produced in 1999. Within a nursery or garden, the fungus is mainly spread through splash dispersal of its asexual spores (
conidia A conidium ( ; ), sometimes termed an asexual chlamydospore or chlamydoconidium (), is an asexual, non-motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also called mitospores due to the ...
) which are formed in bulbous fruiting bodies called
pycnidia A pycnidium (plural pycnidia) is an asexual fruiting body produced by mitosporic fungi, for instance in the order Sphaeropsidales ( Deuteromycota, Coelomycetes) or order Pleosporales (Ascomycota, Dothideomycetes). It is often spherical or inve ...
. Pycnidia can be formed on any infected part of the plant showing symptoms, including leaves, stems and roots. The pycnidia exude the spores in a sticky mass which is splash dispersed to other plants nearby during rain or irrigation. Contact, such as with pruning tools, may also spread the spores and, in addition, it is suspected that certain insect species may act as contact vectors. Movement of infected plant material forms an important method of spread to previously unaffected nurseries or gardens. Unlike many other plant pathogens, ''Calophoma clematidina'' is not a
biotroph Parasitism is a close relationship between species, where one organism, the parasite, lives on or inside another organism, the host, causing it some harm, and is adapted structurally to this way of life. The entomologist E. O. Wilson has c ...
which means that it can infect plants but does not need them to survive. The fungus can live saprophytically on dead plant material or organic matter as well. In addition, it forms thick-walled resting spores (
chlamydospore A chlamydospore is the thick-walled large resting spore of several kinds of fungi, including Ascomycota such as '' Candida'', Basidiomycota such as ''Panus'', and various Mortierellales species. It is the life-stage which survives in unfavourable c ...
s) which increase its survival in plant debris and soil during unfavourable conditions.


Disease development

Many publications report ''Calophoma clematidina'' to be a wound pathogen. However, although wounding may aid infection, scientific trials have shown that, in susceptible ''
Clematis ''Clematis'' is a genus of about 300 species within the buttercup family, Ranunculaceae. Their garden hybrids have been popular among gardeners, beginning with ''Clematis'' × ''jackmanii'', a garden standby since 1862; more hybrid cultivars ...
'' varieties, the fungus can cause extensive leaf spotting and wilt without any previous damage to plant tissues. When spores of ''Calophoma clematidina'' land on a leaf of a susceptible plant under the right environmental conditions (moisture, temperature ), they will germinate within 6 hours and infect leaf tissues directly or via leaf hairs (but never via
stomata In botany, a stoma (from Greek ''στόμα'', "mouth", plural "stomata"), also called a stomate (plural "stomates"), is a pore found in the epidermis of leaves, stems, and other organs, that controls the rate of gas exchange. The pore is bor ...
). Initial symptoms are small brown lesions which then rapidly spread, eventually killing the whole leaf. Unless the plant abcises the leaf in reaction to the infection, the fungus will spread via the
leaf stalk In botany, the petiole () is the stalk that attaches the leaf blade to the stem, and is able to twist the leaf to face the sun. This gives a characteristic foliage arrangement to the plant. Outgrowths appearing on each side of the petiole in so ...
to the
node In general, a node is a localized swelling (a "knot") or a point of intersection (a vertex). Node may refer to: In mathematics *Vertex (graph theory), a vertex in a mathematical graph *Vertex (geometry), a point where two or more curves, lines, ...
of the stem. Infection may also occur directly into the stem. This is particularly common at or below soil level where the right amounts of moisture are more likely to persist. Once in the stem, ''Calophoma clematidina'' destroys the internal tissues causing a distinctive, localised black discolouration. Such stem infections can be hugely destructive as they block the plant's
vascular system The blood circulatory system is a system of organs that includes the heart, blood vessels, and blood which is circulated throughout the entire body of a human or other vertebrate. It includes the cardiovascular system, or vascular system, tha ...
and will lead to the wilting and death of all plant mass above the site of entry, no matter how substantial.RHS Clematis wilt
/ref> Relatively recently, it was discovered that ''Calophoma clematidina'' can also infect the roots of ''Clematis'' and be a cause of black root rot. In practice, this has been found to be a particular issue in containerised plants.


Host susceptibility

Many gardening publications express a view on the susceptibility of different ''Clematis'' varieties and species to clematis wilt based on observations in practice, but very few comment on their susceptibility to disease caused by ''Calophoma clematidina'' in particular compared with other causes of wilt. Scientific trials have shown that large-flowered varieties are especially susceptible to disease caused by ''Calophoma clematidina'' in line with their vulnerability to wilt observed in practice. It is believed that hybrids which have '' Clematis lanuginosa'' in their ancestry are most susceptible to wilt. Such hybrids include many
cultivar A cultivar is a type of cultivated plant that people have selected for desired traits and when propagated retain those traits. Methods used to propagate cultivars include: division, root and stem cuttings, offsets, grafting, tissue culture, ...
s in the early flowering, large-flowered group (such as ''C.'' 'Nelly Moser' and ''C.'' 'Elsa Späth') and, to a lesser extent, cultivars in the late flowering, large-flowered group (such as ''C.'' 'Jackmanii' and ''C.'' 'Perle d'Azur').Howells J. (1994)
"Vulnerability to clematis wilt in large flowered clematis". ''The Clematis'', p. 51.
/ref> ''
Clematis viticella ''Clematis viticella'', the Italian leather flower, purple clematis, or Virgin's bower, is a species of flowering plant in the buttercup family Ranunculaceae, native to Europe. This deciduous climber was the first clematis imported into English ...
'' and related varieties are also susceptible to infection with ''Calophoma clematidina'', yet are reported to wilt less often than large-flowered varieties, possibly because they are very vigorous and outgrow infections quite rapidly. Most other cultivated ''Clematis'' species and their varieties are largely resistant to both infection with ''Calophoma clematidina'' and wilt in general. ''Calophoma clematidina'' has sporadically been reported from species of ''Clematis'' growing in the wild, including '' Clematis orientalis'' in Russia and '' Clematis pubescens'' in Australia. Reported isolations from wild '' C. vitalba'' in Europe have proven to be an unnamed ''Didymella'' species rather than ''Calophoma clematidina''.


As biological control

This fungus has been reported as having been successfully used as a
biological control Biological control or biocontrol is a method of controlling pests, such as insects, mites, weeds, and plant diseases, using other organisms. It relies on predation, parasitism, herbivory, or other natural mechanisms, but typically also invo ...
agent of ''
Clematis vitalba ''Clematis vitalba'' (also known as old man's beard and traveller's joy) is a shrub of the family Ranunculaceae. Description ''Clematis vitalba'' is a climbing shrub with branched, grooved stems, deciduous leaves, and scented greeny-white flo ...
'', which is seen as an
invasive plant An invasive species otherwise known as an alien is an introduced organism that becomes overpopulated and harms its new environment. Although most introduced species are neutral or beneficial with respect to other species, invasive species ad ...
in New Zealand. However, further genetic studies of the isolates used in those trials have revealed that the fungus released as biocontrol agent had been misidentified and was not ''Calophoma clematidina'', which thus far has never been found on ''
Clematis vitalba ''Clematis vitalba'' (also known as old man's beard and traveller's joy) is a shrub of the family Ranunculaceae. Description ''Clematis vitalba'' is a climbing shrub with branched, grooved stems, deciduous leaves, and scented greeny-white flo ...
''.


Management

Benzimidazole fungicide Benzimidazole fungicides are a class of fungicides including benomyl, carbendazim (MBC), thiophanate-methyl, thiabendazole and fuberidazole. They can control many ascomycetes and basidiomycetes, but not oomycetes. They are applied to cereals, fru ...
s are used. Benzimidazole resistance has occurred.


References

{{Taxonbar, from=Q7187110 Fungi described in 1880 Fungal plant pathogens and diseases Ornamental plant pathogens and diseases