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''Middelburg virus'' (MIDV) is an
alphavirus ''Alphavirus'' is a genus of RNA viruses, the sole genus in the ''Togaviridae'' family. Alphaviruses belong to group IV of the Baltimore classification of viruses, with a positive-sense, single-stranded RNA genome. There are 32 alphaviruses, ...
of the Old World Group that has likely endemic and
zoonotic A zoonosis (; plural zoonoses) or zoonotic disease is an infectious disease of humans caused by a pathogen (an infectious agent, such as a bacterium, virus, parasite or prion) that has jumped from a non-human (usually a vertebrate) to a human. ...
potential. It is of the viral family ''
Togaviridae This category is for articles about virus families (or redirects to such articles). There should be no subcategories. families Family (from la, familia) is a group of people related either by consanguinity (by recognized birth) or affinity ( ...
''. It was isolated from mosquitos in 1957 in South Africa, MDIV
antigen In immunology, an antigen (Ag) is a molecule or molecular structure or any foreign particulate matter or a pollen grain that can bind to a specific antibody or T-cell receptor. The presence of antigens in the body may trigger an immune response. ...
s have now been found in livestock, horses, and humans.


Symptoms

Typical symptoms of MIDV include: fever, swollen/aching limbs, hyperactivity, and depression. There is research suggesting that MIDV might cause
neurologic disease A neurological disorder is any disorder of the nervous system. Structural, biochemical or electrical abnormalities in the brain, spinal cord or other nerves can result in a range of symptoms. Examples of symptoms include paralysis, muscle weakness ...
. Some signs of the neurologic disease are:
ataxia Ataxia is a neurological sign consisting of lack of voluntary coordination of muscle movements that can include gait abnormality, speech changes, and abnormalities in eye movements. Ataxia is a clinical manifestation indicating dysfunction of ...
,
paresis In medicine, paresis () is a condition typified by a weakness of voluntary movement, or by partial loss of voluntary movement or by impaired movement. When used without qualifiers, it usually refers to the limbs, but it can also be used to desc ...
,
seizure An epileptic seizure, informally known as a seizure, is a period of symptoms due to abnormally excessive or synchronous neuronal activity in the brain. Outward effects vary from uncontrolled shaking movements involving much of the body with los ...
s, and
paralysis Paralysis (also known as plegia) is a loss of motor function in one or more muscles. Paralysis can also be accompanied by a loss of feeling (sensory loss) in the affected area if there is sensory damage. In the United States, roughly 1 in 50 ...
. In these cases where MIDV infection led to neurologic disease, moderate
meningoencephalitis Meningoencephalitis (; from ; ; and the medical suffix ''-itis'', "inflammation"), also known as herpes meningoencephalitis, is a medical condition that simultaneously resembles both meningitis, which is an infection or inflammation of the menin ...
was observed microscopically. There have also been rare cases in horses where MIDV infection has led to
jaundice Jaundice, also known as icterus, is a yellowish or greenish pigmentation of the skin and sclera due to high bilirubin levels. Jaundice in adults is typically a sign indicating the presence of underlying diseases involving abnormal heme meta ...
, laminitic stance, and aborted pregnancy.


Virus structure

Middelburg virus is a single stranded, linearly arranged, positive stranded
RNA virus An RNA virus is a virusother than a retrovirusthat has ribonucleic acid (RNA) as its genetic material. The nucleic acid is usually single-stranded RNA ( ssRNA) but it may be double-stranded (dsRNA). Notable human diseases caused by RNA viruses ...
. MIDV has an enveloped
capsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may ...
that contains an
icosahedron In geometry, an icosahedron ( or ) is a polyhedron with 20 faces. The name comes and . The plural can be either "icosahedra" () or "icosahedrons". There are infinitely many non- similar shapes of icosahedra, some of them being more symmetrica ...
structure. The icosahedron has a
triangulation number A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may ...
(T) of 4, meaning it contains 240 monomers. It is thought to be part of the Semliki Forest clade of Alphaviridae


Genome

A complete genomic sequence was made of the originally isolated MIDV-857 strand using a
RT-qPCR A real-time polymerase chain reaction (real-time PCR, or qPCR) is a laboratory technique of molecular biology based on the polymerase chain reaction (PCR). It monitors the amplification of a targeted DNA molecule during the PCR (i.e., in real ...
method. Researchers found that the genome was 11,674
nucleotide Nucleotides are organic molecules consisting of a nucleoside and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both of which are essential biomolecules wi ...
s long, not including the 5'-terminal cap or polyA-tail. They found that the 5'-terminal cap and polyA-tail fell between 180-220 residues. Through this sequencing, it was determined that MIDV has a similar structure and organization of its genome in comparison to other alphaviruses. MIDV possesses the same read-through
stop codon In molecular biology (specifically protein biosynthesis), a stop codon (or termination codon) is a codon (nucleotide triplet within messenger RNA) that signals the termination of the translation process of the current protein. Most codons in me ...
between the genes nsP3 and nsP4, which is distinctive of alphaviruses. This same study found that the MIDV E1 gene was likely formed through recombination with Semliki Forest virus, or a virus very similar to SFV. The E1 gene is a
membrane fusion protein Membrane fusion proteins (not to be confused with chimeric or fusion proteins) are proteins that cause fusion of biological membranes. Membrane fusion is critical for many biological processes, especially in eukaryotic development and viral entry. ...
that is important in viral entry and release. Together, E1 and E2 are the glycoproteins that make up the Alphavirus
envelope An envelope is a common packaging item, usually made of thin, flat material. It is designed to contain a flat object, such as a letter or card. Traditional envelopes are made from sheets of paper cut to one of three shapes: a rhombus, a shor ...
over the
nucleocapsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may ...
. A final finding of this study located a 112 nucleotide duplication in the 3'
untranslated region In molecular genetics, an untranslated region (or UTR) refers to either of two sections, one on each side of a coding sequence on a strand of mRNA. If it is found on the 5' side, it is called the 5' UTR (or leader sequence), or if it is foun ...
(UTR) of the MIDV genome, implying that this virus is prone to duplication mutations. In a similar study, MIDV was found to have two
open reading frame In molecular biology, open reading frames (ORFs) are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible readin ...
s (ORFs). The first ORF encodes for nonstructural proteins, while the second ORF encodes the structural proteins like E1 and E2. It is important to know the sequencing to understand if certain strains act differently by causing different symptoms (i.e. only arthritis, only encephalitis, or both).


Replication cycle


Entry

Alphaviruses, like MIDV, use receptor-mediated endocytic uptake to get into a host cell. Since no MIDV-specific cell entry literature could be found, the Alphavirus entry information that MIDV utilizes will be stated here. After being taken in through endocytosis, a low pH triggers a membrane fusion, which delivers the viral RNA genomes into the cell's cytoplasm. It is not yet know which surface molecule acts as an Alphavirus receptor, but research is looking at cell surface
heparan sulfate Heparan sulfate (HS) is a linear polysaccharide found in all animal tissues. It occurs as a proteoglycan (HSPG, i.e. Heparan Sulfate ProteoGlycan) in which two or three HS chains are attached in close proximity to cell surface or extracellular ma ...
(HS) as a viable receptor considering its close relation to the E2 protein found on the Alphavirus envelope. Research is also looking at
DC-SIGN DC-SIGN (Dendritic Cell-Specific Intercellular adhesion molecule-3-Grabbing Non-integrin) also known as CD209 ( Cluster of Differentiation 209) is a protein which in humans is encoded by the ''CD209'' gene. DC-SIGN is a C-type lectin receptor pr ...
/ L-SIGN as a receptor since it binds to
mannose Mannose is a sugar monomer of the aldohexose series of carbohydrates. It is a C-2 epimer of glucose. Mannose is important in human metabolism, especially in the glycosylation of certain proteins. Several congenital disorders of glycosylation ...
-rich carbohydrates that are often found in mosquitos, the vectors for Alphaviruses and MIDV. Alphaviruses utilize the clathrin-mediated endocytic pathway. Since presence of the Alphavirus does not have an effect on the number of clathrin-coated vesicles, it is assumed that the alphavirus takes advantage of the cells own processes without alteration. Research has found that this endocytic uptake of alphaviruses can be stopped through injection of anti-clathrin drugs - this could be utilized in the future to make a vaccine. After endocytic uptake, the virus is quickly delivered to the early endosome compartment, where a low pH then lyses the endosome and virus, exposing the cytoplasm to viral nucleocapsid.
Cholesterol Cholesterol is any of a class of certain organic molecules called lipids. It is a sterol (or modified steroid), a type of lipid. Cholesterol is biosynthesized by all animal cells and is an essential structural component of animal cell mem ...
is also necessary for the Alphavirus to undergo fusion. This fusion of the endosomal membrane to the viral envelope allows the release of nucleocapsid into the cytoplasm of the host cell. Almost immediately the nucleocapsid is uncoated, exposing the viral RNA to the host cytoplasm


Replication and transcription

MIDV is a member of the family Togoviridae, which is hypothesized to use a "factory" replication process. The "factories" in this case, are the host cell's
endosome Endosomes are a collection of intracellular sorting organelles in eukaryotic cells. They are parts of endocytic membrane transport pathway originating from the trans Golgi network. Molecules or ligands internalized from the plasma membrane can ...
s and
lysosome A lysosome () is a membrane-bound organelle found in many animal cells. They are spherical vesicles that contain hydrolytic enzymes that can break down many kinds of biomolecules. A lysosome has a specific composition, of both its membrane prot ...
s. The role of the endosome was explained above in the section on viral entry. The modified cellular lysosome creates a new vesicular structure termed the "cytopathic vacuole" (CPV) which can serve as a site for viral replication and possible transcription. The relationship between the CPV and RER are believed to create a viable site for translation of structural proteins and assembly of nucleocapsids of newly synthesized viruses. In replication, the (+)ssRNA genome is translated to make a
polyprotein Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called protease ...
, which is in turn cleaved into the smaller structural proteins that are used in the replication and transcription of RNA. From the viral RNA, a
double-stranded RNA Ribonucleic acid (RNA) is a polymeric molecule essential in various biological roles in coding, decoding, regulation and expression of genes. RNA and deoxyribonucleic acid ( DNA) are nucleic acids. Along with lipids, proteins, and carbohydr ...
(dsRNA) template is made. This dsRNA template then is transcribed and replicated, which is the new mRNA that is utilized for subsequent virus generations.


Assembly and release

The
subgenomic RNA Subgenomic mRNAs are essentially smaller sections of the original transcribed template strand. 3' to 5' DNA or RNA During transcription, the original template strand is usually read from the 3' to the 5' end from beginning to end. Subgenomic m ...
(sgRNA) that was made prior to this begins the next step in the
life cycle Life cycle, life-cycle, or lifecycle may refer to: Science and academia *Biological life cycle, the sequence of life stages that an organism undergoes from birth to reproduction ending with the production of the offspring *Life-cycle hypothesis, ...
of MIDV: assembly and release. The sgRNA codes for the structural proteins that will form the new virus. The assembly of the new viral capsid occurs in the cytoplasm. Finally, this newly synthesized capsid is enveloped by budding, a process that occurs when the virus exits the cells and is surrounded by the plasma membrane


Possible Vectors

MIDV was first isolated from the mosquito species ''
Ochlerotatus ''Ochlerotatus'' is a genus of mosquito. Until 2000, it was ranked as a subgenus of ''Aedes'', but after Reinert's work, the clade was upgraded to the level of a genus. This change has resulted in the renaming of many subgenus species, and many a ...
(Aedes) caballus'', since then it has been found in other mosquito species in South Africa including: '' Aedes leneatopennis'' and '' Aedes albothorax''. The virus is limited to Africa, but due to the wide range of these mosquito hosts and possible travelling of horses and livestock, there is cause to believe it might spread elsewhere.
Sindbis virus ''Sindbis virus'' (SINV) is a member of the ''Togaviridae'' family, in the ''Alphavirus'' genus. The virus was first isolated in 1952 in Cairo, Egypt. The virus is transmitted by mosquitoes (''Culex'' and Culiseta). SINV is linked to Pogosta di ...
, an extremely similar virus to MIDV has spread outside of Africa and effects humans. The horses themselves cannot act as vectors to spread MIDV since the concentration of virus in the host blood stream is too small to infect a mosquito. Other host species include ''
Ovis aries Sheep or domestic sheep (''Ovis aries'') are domesticated, ruminant mammals typically kept as livestock. Although the term ''sheep'' can apply to other species in the genus '' Ovis'', in everyday usage it almost always refers to domesticated ...
'', '' Mansonia'', and '' Aedes vittatus''.


Associated Disease

MIDV is classified as an Old World Alphavirus which also includes
Semliki Forest virus The Semliki Forest virus is an alphavirus found in central, eastern, and southern Africa. It was first isolated from mosquitoes in the Semliki Forest, Uganda by the Uganda Virus Research Institute in 1942 and described by Smithburn and Haddow. ...
(SFV),
Ndumu virus Ndumu virus is an RNA virus in the genus ''Alphavirus''. It was first isolated in 1961 from culicine mosquitoes collected in northern Natal, Union of South Africa The Union of South Africa ( nl, Unie van Zuid-Afrika; af, Unie van Suid-Af ...
,
Barmah Forest virus ''Barmah Forest virus'' is an RNA virus in the genus ''Alphavirus''. This disease was named after the Barmah Forest in the northern Victoria region of Australia where it was first isolated in 1974. Or The first documented case in humans was in ...
, and the very well-known
Chikungunya virus Chikungunya is an infection caused by the ''Chikungunya virus'' (CHIKV). Symptoms include fever and joint pains. These typically occur two to twelve days after exposure. Other symptoms may include headache, muscle pain, joint swelling, and a ra ...
. These diseases all have similar symptoms: arthritis, fever, and rash. Current research is also pointing to Old World Alphaviruses leading to neurologic disease like their New World counterparts . There is a similar group of Alphavirus known as the New World Alphaviruses that also share much in common with MIDV. These include: Eastern equine encephalitis (EEE) virus, and
Venezuelan equine encephalitis virus Venezuelan equine encephalitis virus is a mosquito-borne viral pathogen that causes Venezuelan equine encephalitis or encephalomyelitis (VEE). VEE can affect all equine species, such as horses, donkeys, and zebras. After infection, equines may ...
. These viruses are more notoriously associated with neurologic disease and are more likely to effect humans.


Tropism

There is no literature on MIDV
tropism A tropism is a biological phenomenon, indicating growth or turning movement of a biological organism, usually a plant, in response to an environmental stimulus. In tropisms, this response is dependent on the direction of the stimulus (as oppose ...
; based on the symptoms, it can be deduced that the virus mostly affects host connective tissue at the joints, causing arthritis. The virus also affects epithelial tissue in the form of a rash and nervous tissue in the form of encephalitis.


Treatment

There is no known treatment for MIDV in horses currently. Veterinarians may give anti-inflammatory drugs to affected animals to lessen the inflammatory response of the infection. Horse owners can also take preemptive measure by using long-lasting repellants and mosquito netting.


References

{{Taxonbar, from=Q18976359 Togaviruses