Lactobacillus Paracasei
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''Lacticaseibacillus paracasei '' (commonly abbreviated as ''Lc. paracasei'') is a
gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacte ...
, homofermentative species of
lactic acid bacteria Lactobacillales are an order of gram-positive, low-GC, acid-tolerant, generally nonsporulating, nonrespiring, either rod-shaped (bacilli) or spherical (cocci) bacteria that share common metabolic and physiological characteristics. These bacte ...
that are commonly used in dairy product
fermentation Fermentation is a metabolic process that produces chemical changes in organic substrates through the action of enzymes. In biochemistry, it is narrowly defined as the extraction of energy from carbohydrates in the absence of oxygen. In food ...
and as probiotic cultures. ''Lc. paracasei'' is a bacterium that operates by
commensalism Commensalism is a long-term biological interaction (symbiosis) in which members of one species gain benefits while those of the other species neither benefit nor are harmed. This is in contrast with mutualism, in which both organisms benefit fro ...
. It is commonly found in many human habitats such as human intestinal tracts and mouths as well as sewages, silages, and previously mentioned dairy products. The name includes
morphology Morphology, from the Greek and meaning "study of shape", may refer to: Disciplines * Morphology (archaeology), study of the shapes or forms of artifacts * Morphology (astronomy), study of the shape of astronomical objects such as nebulae, galaxies ...
, a rod-shaped (
bacillus ''Bacillus'' (Latin "stick") is a genus of Gram-positive, rod-shaped bacteria, a member of the phylum ''Bacillota'', with 266 named species. The term is also used to describe the shape (rod) of other so-shaped bacteria; and the plural ''Bacilli ...
shape) bacterium with a width of 2.0 to 4.0μm and length of 0.8 to 1.0μm. Strains of ''L. paracasei'' have been isolated from a variety of environments including dairy products, plants or plant fermentations, and from the human and animal
gastrointestinal The gastrointestinal tract (GI tract, digestive tract, alimentary canal) is the tract or passageway of the digestive system that leads from the mouth to the anus. The GI tract contains all the major organs of the digestive system, in humans and ...
tracts. A protracted refrigeration period before in vitro gastrointestinal transit (GIT) did not affect or influenced very weakly cell resistance . ''Lacticaseibacillus paracasei'' is
genotypic The genotype of an organism is its complete set of genetic material. Genotype can also be used to refer to the alleles or variants an individual carries in a particular gene or genetic location. The number of alleles an individual can have in a ...
ally and
phenotypic In genetics, the phenotype () is the set of observable characteristics or traits of an organism. The term covers the organism's morphology or physical form and structure, its developmental processes, its biochemical and physiological proper ...
ally closely related from other members of the ''Lacticaseibacillus casei'' group which also includes ''
Lacticaseibacillus casei ''Lacticaseibacillus casei ''is an organism that belongs to the largest genus in the family ''Lactobacillaceae'', a lactic acid bacteria (LAB), that was previously classified as ''Lactobacillus casei-01''. This bacteria has been identified as facu ...
'', ''Lacticaseibacillus zeae'' and ''
Lacticaseibacillus rhamnosus ''Lacticaseibacillus rhamnosus'' (previously ''Lactobacillus rhamnosus'') is a bacterium that originally was considered to be a subspecies of '' L. casei'', but genetic research found it to be a separate species in the ''L. casei'' clade, which ...
''. However, these species are readily differentiated from each other by Multi-Locus-Sequence-Typing, core genome phylogeny, or Average Nucleotide Identity. Its fermentative properties allows it to be used as biological food processors and supplements for diets and medical disorders, especially in the
gastrointestinal tract The gastrointestinal tract (GI tract, digestive tract, alimentary canal) is the tract or passageway of the digestive system that leads from the mouth to the anus. The GI tract contains all the major organ (biology), organs of the digestive syste ...
. Although probiotics are considered safe, they may cause bacteria-host interactions and adverse health consequences. In certain cases there is a risk of
bacteremia Bloodstream infections (BSIs), which include bacteremias when the infections are bacterial and fungemias when the infections are fungal, are infections present in the blood. Blood is normally a sterile environment, so the detection of microb ...
when probiotics are used. Currently, the probiotic strain, frequency, dose and duration of the probiotic therapies are not established.


Physiology

''Lacticaseibacillus paracasei'' is a
gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacte ...
, homofermentative, non-spore forming microorganism. As ''Lc. paracasei'' is homofermentative,
lactic acid Lactic acid is an organic acid. It has a molecular formula . It is white in the solid state and it is miscible with water. When in the dissolved state, it forms a colorless solution. Production includes both artificial synthesis as well as natu ...
is produced as the main product of hexose metabolism while lactate and acetate is produced from pentoses. The cells of ''Lc. paracasei'' are typically rod shaped, with a size range of 2.0μm to 4.0μm in width, and 0.8 to 1.0μm in length. The organism is nonmotile. ''Lc. paracasei'' cells often have square ends, and may exist either in single form or in chains. ''Lacticaseibacillus paracasei'' grows optimally in a temperature range between 10 and 37 °C. No growth takes place above 40 °C. The organism is able to survive for approximately 40 seconds in a maximum temperature of 72 °C. The survivability of ''Lc. paracasei'' was remarkably higher when stored under refrigeration (4 °C).In contrast, the lowest survival was observed during non-refrigerated storage(22 °C) Freezing at -20 degrees C and -70 degrees C had much less adverse effect on viability than did storage at 7 degrees C ''Lacticaseibacillus paracasei'' temporarily exists as a common inhabitant of the human
gastrointestinal tract The gastrointestinal tract (GI tract, digestive tract, alimentary canal) is the tract or passageway of the digestive system that leads from the mouth to the anus. The GI tract contains all the major organ (biology), organs of the digestive syste ...
as part of the normal microbiota. Naturally
ferment Fermentation is a metabolic process that produces chemical changes in organic substrates through the action of enzymes. In biochemistry, it is narrowly defined as the extraction of energy from carbohydrates in the absence of oxygen. In food ...
ed vegetables, milk, and meat may also contain strains of ''L. paracasei''.


Phylogeny

''Lacticaseibacillus paracasei'' belongs to kingdom
Bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among ...
. ''Lc. paracasei'' is part of the phylum
Bacillota The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have gram-positive cell wall structure. The renaming of phyla such as Firmicutes in 2021 remains controversial among microbiologists, many of whom continue to use the earl ...
, the class
Bacilli Bacilli is a taxonomic class of bacteria that includes two orders, Bacillales and Lactobacillales, which contain several well-known pathogens such as ''Bacillus anthracis'' (the cause of anthrax). ''Bacilli'' are almost exclusively gram-positive ...
, the order
Lactobacillales Lactobacillales are an order of gram-positive, GC-content, low-GC, acid-tolerant, generally nonsporulating, Aerotolerant anaerobe, nonrespiring, either rod-shaped (bacillus (shape), bacilli) or spherical (cocci) bacteria that share common metabo ...
and the family
Lactobacillaceae The ''Lactobacillaceae'' are a family of lactic acid bacteria. It is the only family in the lactic acid bacteria which includes homofermentative and heterofermentative organisms; in the ''Lactobacillaceae,'' the pathway used for hexose fermentati ...
respectively. The argument on the
nomenclature Nomenclature (, ) is a system of names or terms, or the rules for forming these terms in a particular field of arts or sciences. The principles of naming vary from the relatively informal naming conventions, conventions of everyday speech to the i ...
of ''L. paracasei'' versus ''L. casei'' was intensely debated as many strains of ''L. casei'' or ''L. paracasei'' for which sequence data is available in the databases are mis-labeled. In 1989, it was proposed that ''L. paracasei'' be designated a subspecies (''paracasei'') to account for the species that it shares DNA
homology Homology may refer to: Sciences Biology *Homology (biology), any characteristic of biological organisms that is derived from a common ancestor * Sequence homology, biological homology between DNA, RNA, or protein sequences *Homologous chrom ...
with. It has been shown their names have been used interchangeably in scientific literature.
16S RNA 16 S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rR ...
sequence
homology Homology may refer to: Sciences Biology *Homology (biology), any characteristic of biological organisms that is derived from a common ancestor * Sequence homology, biological homology between DNA, RNA, or protein sequences *Homologous chrom ...
has confirmed the relatedness between these species but core genome phylogeny confirmed that the closely related species ''Lc. casei'', ''Lc. paracasei'', ''Lc. rhamnosus'' and ''Lc. zeae'' are separate species. Historically, the difference between ''Lacticaseibacillus paracasei'' and other
lactobacilli The ''Lactobacillaceae'' are a family of lactic acid bacteria. It is the only family in the lactic acid bacteria which includes homofermentative and heterofermentative organisms; in the ''Lactobacillaceae,'' the pathway used for hexose fermentati ...
has been based on
biochemical Biochemistry or biological chemistry is the study of chemical processes within and relating to living organisms. A sub-discipline of both chemistry and biology, biochemistry may be divided into three fields: structural biology, enzymology an ...
characteristics. There is an approximately 90% sequence identity between ''
casei Casei Gerola is a ''comune'' (municipality) in the Province of Pavia, Lombardy, Italy. It is located about southwest of Milan and about southwest of Pavia. Casei Gerola borders the following municipalities: Castelnuovo Scrivia, Cornale e Bast ...
'', ''paracasei'', and ''rhamnosus''. However, there are some differential criteria that are commonly used to differentiate between them. These differential criteria include nutritional requirements and growth environment. ''L. paracasei'' has been found to show specific differences with other lactobacilli in that it is somewhat heat resistant, grows well in ripening cheese, and it has high
proteolytic Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called proteases, ...
activity.


Genomics

''Lacticaseibacillus paracasei's'' genome contains circular DNA and varies slightly among the different strains isolated. On average, the
genomes In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding gen ...
are 2.9 to 3.0 million base pairs (commonly abbreviated Mb). It has a
GC-content In molecular biology and genetics, GC-content (or guanine-cytosine content) is the percentage of nitrogenous bases in a DNA or RNA molecule that are either guanine (G) or cytosine (C). This measure indicates the proportion of G and C bases out o ...
between 46.2 and 46.6% and is predicted to encode about 2800 to 3100 proteins. The difference in the genomes of these strains lies in variant
cell envelope The cell envelope comprises the inner cell membrane and the cell wall of a bacterium. In gram-negative bacteria an outer membrane is also included. This envelope is not present in the Mollicutes where the cell wall is absent. Bacterial cell env ...
s,
secretory protein A secretory protein is any protein, whether it be endocrine or exocrine, which is secreted by a cell. Secretory proteins include many hormones, enzymes, toxins, and antimicrobial peptides. Secretory proteins are synthesized in the endoplasmic ret ...
s, and
polysaccharides Polysaccharides (), or polycarbohydrates, are the most abundant carbohydrates found in food. They are long chain polymeric carbohydrates composed of monosaccharide units bound together by glycosidic linkages. This carbohydrate can react with w ...
. Many of the commonly coded proteins are cell-surface associated cell-wall
hydrolase Hydrolase is a class of enzyme that commonly perform as biochemical catalysts that use water to break a chemical bond, which typically results in dividing a larger molecule into smaller molecules. Some common examples of hydrolase enzymes are este ...
s that protect the cell against
apoptosis Apoptosis (from grc, ἀπόπτωσις, apóptōsis, 'falling off') is a form of programmed cell death that occurs in multicellular organisms. Biochemical events lead to characteristic cell changes (morphology) and death. These changes incl ...
. These enzymes have been shown to provide cellular protection to human
epithelial Epithelium or epithelial tissue is one of the four basic types of animal tissue, along with connective tissue, muscle tissue and nervous tissue. It is a thin, continuous, protective layer of compactly packed cells with a little intercellula ...
cells. Genetic diversity for the different ''L. paracasei''
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ge ...
s was assessed using
multilocus sequence typing Multilocus sequence typing (MLST) is a technique in molecular biology for the typing of multiple loci, using DNA sequences of internal fragments of multiple housekeeping genes to characterize isolates of microbial species. The first MLST scheme ...
(MLST) and
amplified fragment length polymorphism AFLP-PCR or just AFLP is a PCR-based tool used in genetics research, DNA fingerprinting, and in the practice of genetic engineering. Developed in the early 1990s by KeyGene, AFLP uses restriction enzymes to digest genomic DNA, followed by ligati ...
(AFLP). MLST is a technique used for classifying microbes by the use of DNA fragments from essential genes of the organism. AFLP is a
Polymerase Chain Reaction The polymerase chain reaction (PCR) is a method widely used to rapidly make millions to billions of copies (complete or partial) of a specific DNA sample, allowing scientists to take a very small sample of DNA and amplify it (or a part of it) t ...
(PCR) tool used in
DNA profiling DNA profiling (also called DNA fingerprinting) is the process of determining an individual's DNA characteristics. DNA analysis intended to identify a species, rather than an individual, is called DNA barcoding. DNA profiling is a forensic tec ...
to amplify a desired DNA fragment with the use of
restriction enzymes A restriction enzyme, restriction endonuclease, REase, ENase or'' restrictase '' is an enzyme that cleaves DNA into fragments at or near specific recognition sites within molecules known as restriction sites. Restriction enzymes are one class o ...
and
ligands In coordination chemistry, a ligand is an ion or molecule (functional group) that binds to a central metal atom to form a coordination complex. The bonding with the metal generally involves formal donation of one or more of the ligand's electro ...
.


Clinical and research applications

''Lacticaseibacillus paracasei'' has been identified as a bacterium that has probiotic properties. ''L. paracasei'' IMPC2.1 may be a chemo
prophylactic Preventive healthcare, or prophylaxis, consists of measures taken for the purposes of disease prevention.Hugh R. Leavell and E. Gurney Clark as "the science and art of preventing disease, prolonging life, and promoting physical and mental hea ...
in
gastrointestinal The gastrointestinal tract (GI tract, digestive tract, alimentary canal) is the tract or passageway of the digestive system that leads from the mouth to the anus. The GI tract contains all the major organs of the digestive system, in humans and ...
cells.
Gastrointestinal The gastrointestinal tract (GI tract, digestive tract, alimentary canal) is the tract or passageway of the digestive system that leads from the mouth to the anus. The GI tract contains all the major organs of the digestive system, in humans and ...
cells are susceptible to
apoptosis Apoptosis (from grc, ἀπόπτωσις, apóptōsis, 'falling off') is a form of programmed cell death that occurs in multicellular organisms. Biochemical events lead to characteristic cell changes (morphology) and death. These changes incl ...
and cell growth from both heat-killed and viable IMPC2.1 strains. ''Lc. paracasei'' 8700:2 has been isolated from healthy human gastrointestinal mucosa and human feces. Strain 8700:2 was also found to inhibit ''
Salmonella enterica ''Salmonella enterica'' (formerly ''Salmonella choleraesuis'') is a rod-headed, flagellate, facultative anaerobic, Gram-negative bacterium and a species of the genus ''Salmonella''. A number of its serovars are serious human pathogens. Epidemi ...
'' and ''
Helicobacter pylori ''Helicobacter pylori'', previously known as ''Campylobacter pylori'', is a gram-negative, microaerophilic, spiral (helical) bacterium usually found in the stomach. Its helical shape (from which the genus name, helicobacter, derives) is though ...
'', two pathogens commonly found in the gastrointestinal tract. Strain 8700:2 breaks down
oligofructose Fructooligosaccharides (FOS) also sometimes called oligofructose or oligofructan, are oligosaccharide fructans, used as an alternative sweetener. FOS exhibits sweetness levels between 30 and 50 percent of sugar in commercially prepared syrups. It o ...
and
inulin Inulins are a group of naturally occurring polysaccharides produced by many types of plants, industrially most often extracted from chicory. The inulins belong to a class of dietary fibers known as fructans. Inulin is used by some plants as a mea ...
, while also growing rapidly on both and producing lactic acid as the end product. A formulation of live bacteria including ''Lc. paracasei'' may be used in combination with conventional therapies to treat
ulcerative colitis Ulcerative colitis (UC) is a long-term condition that results in inflammation and ulcers of the colon and rectum. The primary symptoms of active disease are abdominal pain and diarrhea mixed with blood (hematochezia). Weight loss, fever, and a ...
. A systematic review provided significant evidence of beneficial clinical and immunologic effects of ''Lc. paracasei'' LP-33 strains in the treatment of Allergic rhinitis. Lipoteichoic acid from the cell wall of a heat killed ''Lacticaseibacillus paracasei'' D3-5 ameliorates aging-related leaky gut, inflammation and improves physical and cognitive functions in mice Ingestion of LP-33(''Lactobacillus paracasei'' 33 )-fortified fermented milk for 30 days can effectively and safely improve the quality of life of patients with allergic rhinitis, and may serve as an alternative treatment for allergic rhinitis. ''Lacticaseibacillus paracasei'' BRAP01 are the dominant strains inducing IFN-γ/IL-10 production in Taiwanese individuals. ''Lacticaseibacillus paracasei'' HB89 mitigates respiratory tract allergies stimulated by PM.


Health concerns

The manipulation of the gut microbiota is complex and may cause bacteria-host interactions. Although probiotics are considered safe, when they are used by oral administration there is a risk of passage of viable bacteria from the gastrointestinal tract to the internal organs (bacterial translocation) and subsequent bacteremia, which can cause adverse health consequences. Some people, such as those with immune compromise, short bowel syndrome, central venous catheters, cardiac valve disease and premature infants, may be at higher risk for adverse events. Currently, the probiotic strain, frequency, dose and duration of the probiotic therapy are not established. Live bacteria might not be essential because of beneficial effects of probiotics seems to be mediated by their DNA and by secreted soluble factors, and their therapeutic effects may be obtained by systemic administration rather than oral administration.


History

LAB (
Lactic Acid Bacteria Lactobacillales are an order of gram-positive, low-GC, acid-tolerant, generally nonsporulating, nonrespiring, either rod-shaped (bacilli) or spherical (cocci) bacteria that share common metabolic and physiological characteristics. These bacte ...
) were classified and grouped in the early 1900s after gaining scientists' attention after observing the bacteria's interactions in different foods, especially dairy products. In 1991, Martinus
Beijerinck Martinus Willem Beijerinck (, 16 March 1851 – 1 January 1931) was a Dutch microbiologist and botanist who was one of the founders of virology and environmental microbiology. He is credited with the discovery of viruses, which he called "''c ...
, a Dutch microbiologist, separated ''Lactobacillus'' as gram positive bacteria from the previously known LAB group. ''L. paracasei'' has been recently classified as a part of the ''Lacticaseibacillus casei'' group of probiotics. The name ''Lc. paracasei'' was proposed for rejection in 1996 by Dicks, Duplessis, Dellaglio, and Lauer but subsequent work confirmed the validity of the species.


References


External links


Type strain of ''Lactobacillus paracasei'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
{{Taxonbar, from=Q1799829 Lactobacillaceae Bacteria described in 1989 Probiotics