This list of sequence alignment software is a compilation of software tools and web portals used in pairwise
sequence alignment
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Alig ...
and
multiple sequence alignment
Multiple sequence alignment (MSA) may refer to the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the input set of query sequences are assumed to have an evolutio ...
. See
structural alignment software This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison
A structure is an arrangement and organization of interrelated elements in a material ...
for
structural alignment
Structural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also be used for large RN ...
of proteins.
Database search only
*Sequence type: protein or nucleotide
Pairwise alignment
*Sequence type: protein or nucleotide **Alignment type: local or global
Multiple sequence alignment
*Sequence type: protein or nucleotide. **Alignment type: local or global
Genomics analysis
*Sequence type: protein or nucleotide
Motif finding
*Sequence type: protein or nucleotide
Benchmarking
Alignment viewers, editors
Please see
List of alignment visualization software.
Short-read sequence alignment
See also
*
List of open source bioinformatics software
This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.
See also
* List of sequence alignment software
* List of open-source healthcare software
* List o ...
References
{{Reflist
Sequence
In mathematics, a sequence is an enumerated collection of objects in which repetitions are allowed and order matters. Like a set, it contains members (also called ''elements'', or ''terms''). The number of elements (possibly infinite) is calle ...
Sequence alignment software
This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins.
Database sear ...