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In
organic chemistry Organic chemistry is a subdiscipline within chemistry involving the scientific study of the structure, properties, and reactions of organic compounds and organic materials, i.e., matter in its various forms that contain carbon atoms.Clayden, J.; ...
, a cyclophane is a
hydrocarbon In organic chemistry, a hydrocarbon is an organic compound consisting entirely of hydrogen and carbon. Hydrocarbons are examples of group 14 hydrides. Hydrocarbons are generally colourless and hydrophobic, and their odors are usually weak or ex ...
consisting of an
aromatic In chemistry, aromaticity is a chemical property of cyclic ( ring-shaped), ''typically'' planar (flat) molecular structures with pi bonds in resonance (those containing delocalized electrons) that gives increased stability compared to satur ...
unit (typically a
benzene Benzene is an organic chemical compound with the molecular formula C6H6. The benzene molecule is composed of six carbon atoms joined in a planar ring with one hydrogen atom attached to each. Because it contains only carbon and hydrogen atoms, ...
ring) and a
chain A chain is a serial assembly of connected pieces, called links, typically made of metal, with an overall character similar to that of a rope in that it is flexible and curved in compression but linear, rigid, and load-bearing in tension. A c ...
that forms a
bridge A bridge is a structure built to span a physical obstacle (such as a body of water, valley, road, or rail) without blocking the way underneath. It is constructed for the purpose of providing passage over the obstacle, which is usually somethi ...
between two non-adjacent positions of the aromatic ring. More complex derivatives with multiple aromatic units and bridges forming cagelike structures are also known. Cyclophanes are well-studied examples of strained organic compounds.


Cyclophanes


Structures

Paracyclophanes adopt the
boat conformation In organic chemistry, cyclohexane conformations are any of several three-dimensional shapes adopted by molecules of cyclohexane. Because many compounds feature structurally similar six-membered rings, the structure and dynamics of cyclohexane are ...
normally observed in
cyclohexane Cyclohexane is a cycloalkane with the molecular formula . Cyclohexane is non-polar. Cyclohexane is a colorless, flammable liquid with a distinctive detergent-like odor, reminiscent of cleaning products (in which it is sometimes used). Cyclohexan ...
s. Smaller value of n lead to greater distortions.
X-ray crystallography X-ray crystallography is the experimental science determining the atomic and molecular structure of a crystal, in which the crystalline structure causes a beam of incident X-rays to diffract into many specific directions. By measuring the angles ...
on ' aracyclophane' shows that the aromatic bridgehead carbon atom makes an angle of 20.5° with the plane. The
benzyl In organic chemistry, benzyl is the substituent or molecular fragment possessing the structure . Benzyl features a benzene ring () attached to a methylene group () group. Nomenclature In IUPAC nomenclature, the prefix benzyl refers to a substi ...
carbons deviate by another 20.2°. The carbon-to-carbon bond length alternation has increased from 0 for
benzene Benzene is an organic chemical compound with the molecular formula C6H6. The benzene molecule is composed of six carbon atoms joined in a planar ring with one hydrogen atom attached to each. Because it contains only carbon and hydrogen atoms, ...
to 39 pm. Despite their distorted structures, cyclophanes retain their
aromaticity In chemistry, aromaticity is a chemical property of cyclic ( ring-shaped), ''typically'' planar (flat) molecular structures with pi bonds in resonance (those containing delocalized electrons) that gives increased stability compared to saturate ...
, as determined by UV-vis spectroscopy.


Reactivity

With regards to their reactivity, cyclophanes often exhibit diene-like behavior, despite evidence for aromaticity in even the most distorted cyclophane. This highly distorted cyclophane
photochemically Photochemistry is the branch of chemistry concerned with the chemical effects of light. Generally, this term is used to describe a chemical reaction caused by absorption of ultraviolet (wavelength from 100 to 400  nm), visible light (400–7 ...
converts to the
Dewar benzene Dewar benzene (also spelled ''dewarbenzene'') or bicyclo .2.0exa-2,5-diene is a bicyclic isomer of benzene with the molecular formula C6H6. The compound is named after James Dewar who included this structure in a list of possible C6H6 structures in ...
derivative. Heat reverses the reaction. With
dimethyl acetylenedicarboxylate Dimethyl acetylenedicarboxylate (DMAD) is an organic compound with the formula CH3O2CC2CO2CH3. It is a di-ester in which the ester groups are conjugated with a C-C triple bond. As such, the molecule is highly electrophilic, and is widely employed ...
, etacyclophane rapidly undergoes the Diels-Alder reaction. A non-bonding nitrogen to arene distance of 244 pm is recorded for a pyridinophane and in the unusual
superphane .2.2.2.2.21,2,3,4,5,6)Cyclophane or superphane is a 6-fold bridged cyclophane with all arene positions in the benzene dimer taken up by ethylene spacers. The compound has been of some scientific interest as a model for testing aromaticity and was ...
the two benzene rings are separated by a mere 262 pm. Other representative of this group are in-methylcyclophanes, in-ketocyclophanes and ''in'',''in''-Bis(hydrosilane).


NMR properties

The
proton NMR Proton nuclear magnetic resonance (proton NMR, hydrogen-1 NMR, or 1H NMR) is the application of nuclear magnetic resonance in NMR spectroscopy with respect to hydrogen-1 nuclei within the molecules of a substance, in order to determine the struc ...
spectra of cyclophanes have been intensively examined to gain insights into the aromaticity of the benzene ring. Also of great interest is the shielding effects of the aromatic ring on the hydrocarbon strap. Generally the aromatic protons appear near their usual positions around 7.2 ppm, indicating that even with severe distortions, the ring retains aromaticity. The central methylene protons in the aliphatic bridge are shielded to a position of around - 0.5 ppm.


Synthesis

aracyclophane can be synthesized beginning with the Bamford-Stevens reaction to form the spiro
ketone In organic chemistry, a ketone is a functional group with the structure R–C(=O)–R', where R and R' can be a variety of carbon-containing substituents. Ketones contain a carbonyl group –C(=O)– (which contains a carbon-oxygen double bo ...
1 in ''scheme 3'', rearranging in a
pyrolysis The pyrolysis (or devolatilization) process is the thermal decomposition of materials at elevated temperatures, often in an inert atmosphere. It involves a change of chemical composition. The word is coined from the Greek-derived elements ''py ...
reaction through the
carbene In organic chemistry, a carbene is a molecule containing a neutral carbon atom with a valence of two and two unshared valence electrons. The general formula is or where the R represents substituents or hydrogen atoms. The term "carbene" ma ...
intermediate 4. A separate route to the Dewar form involves a Ag+-induced
rearrangement reaction In organic chemistry, a rearrangement reaction is a broad class of organic reactions where the carbon skeleton of a molecule is rearranged to give a structural isomer of the original molecule. Often a substituent moves from one atom to another ...
of the bicyclopropenyl compound 7. Metacyclophanes are generally less strained and thus more easily prepared than paracyclophanes. Shown below is the route to a 414]metaparacyclophane in ''scheme 4'' featuring a in-situ Ramberg-Bäcklund Reaction converting the
sulfone In organic chemistry, a sulfone is a organosulfur compound containing a sulfonyl () functional group attached to two carbon atoms. The central hexavalent sulfur atom is double-bonded to each of two oxygen atoms and has a single bond to each of ...
3 to the
alkene In organic chemistry, an alkene is a hydrocarbon containing a carbon–carbon double bond. Alkene is often used as synonym of olefin, that is, any hydrocarbon containing one or more double bonds.H. Stephen Stoker (2015): General, Organic, an ...
4.


Naturally occurring cyclophanes

A few cyclophanes exist in nature. One example of a metacyclophane is
cavicularin Cavicularin is a natural phenolic secondary metabolite Secondary metabolites, also called specialised metabolites, toxins, secondary products, or natural products, are organic compounds produced by any lifeform, e.g. bacteria, fungi, animal ...
. Haouamine A is a paracyclophane found in a certain species of
tunicate A tunicate is a marine invertebrate animal, a member of the subphylum Tunicata (). It is part of the Chordata, a phylum which includes all animals with dorsal nerve cords and notochords (including vertebrates). The subphylum was at one time ca ...
. Because of its potential application as an anticancer
drug A drug is any chemical substance that causes a change in an organism's physiology or psychology when consumed. Drugs are typically distinguished from food and substances that provide nutritional support. Consumption of drugs can be via insuffla ...
it is also available from
total synthesis Total synthesis is the complete chemical synthesis of a complex molecule, often a natural product, from simple, commercially-available precursors. It usually refers to a process not involving the aid of biological processes, which distinguishes ...
via an
alkyne \ce \ce Acetylene \ce \ce \ce Propyne \ce \ce \ce \ce 1-Butyne In organic chemistry, an alkyne is an unsaturated hydrocarbon containing at least one carbon—carbon triple bond. The simplest acyclic alkynes with only one triple bond and n ...
-
pyrone Pyrones or pyranones are a class of heterocyclic chemical compounds. They contain an unsaturated six-membered ring containing one oxygen atom and a ketone functional group. There are two isomers denoted as 2-pyrone and 4-pyrone. The 2-pyrone (or ...
Diels-Alder reaction in the crucial step with expulsion of carbon dioxide (''scheme 5''). In this compound the deviation from planarity is 13° for the benzene ring and 17° for the bridgehead carbons. An alternative cyclophane formation strategy in ''scheme 6'' was developed based on
aromatization Aromatization is a chemical reaction in which an aromatic system is formed from a single nonaromatic precursor. Typically aromatization is achieved by dehydrogenation of existing cyclic compounds, illustrated by the conversion of cyclohexane int ...
of the ring well after the formation of the bridge. Two additional types of cyclophanes were discovered in nature when they were isolated from two species of
cyanobacteria Cyanobacteria (), also known as Cyanophyta, are a phylum of gram-negative bacteria that obtain energy via photosynthesis. The name ''cyanobacteria'' refers to their color (), which similarly forms the basis of cyanobacteria's common name, blu ...
from the family ''Nostocacae''. These two classes of cyclophanes are both ,7paracyclophanes and were named after the species from which they were extracted: cylindrocyclophanes from ''Cylindrospermum lichenforme'' and nostocyclophanes from ''Nostoc linckia''.


.naracyclophanes

200px, Superphane. A well studies member of the .naracyclophane family is .2aracyclophane. One method for its preparation is by a 1,6-Hofmann elimination:. The .2aracyclophane-1,9-diene has been applied in
ROMP Romp or ROMP may refer to: * IBM ROMP The ROMP is a reduced instruction set computer (RISC) microprocessor designed by IBM in the late 1970s. It is also known as the Research OPD Miniprocessor (after the two IBM divisions that collaborated on i ...
to a
poly(p-phenylene vinylene) Poly(''p''-phenylene vinylene) (PPV, or polyphenylene vinylene) is a conducting polymer of the rigid-rod polymer family. PPV is the only polymer of this type that can be processed into a highly ordered crystalline thin film. PPV and its derivat ...
with alternating cis-alkene and trans-alkene bonds using Grubbs' second generation catalyst: The driving force for ring-opening and polymerization is strain relief. The reaction is believed to be a
living polymerization In polymer chemistry, living polymerization is a form of chain growth polymerization where the ability of a growing polymer chain to terminate has been removed. This can be accomplished in a variety of ways. Chain termination and chain transfer ...
due to the lack of competing reactions. Because the two benzene rings are in close proximity this cyclophane type also serves as guinea pig for
photochemical Photochemistry is the branch of chemistry concerned with the chemical effects of light. Generally, this term is used to describe a chemical reaction caused by absorption of ultraviolet (wavelength from 100 to 400  nm), visible light (400–7 ...
dimerization reactions as illustrated by this example: The product formed has an octahedrane skeleton. When the
amine In chemistry, amines (, ) are compounds and functional groups that contain a basic nitrogen atom with a lone pair. Amines are formally derivatives of ammonia (), wherein one or more hydrogen atoms have been replaced by a substituen ...
group is replaced by a
methylene group In organic chemistry, a methylene group is any part of a molecule that consists of two hydrogen atoms bound to a carbon atom, which is connected to the remainder of the molecule by two single bonds. The group may be represented as , where the '< ...
no reaction takes place: the dimerization requires through-bond overlap between the aromatic
pi electron In chemistry, pi bonds (π bonds) are covalent chemical bonds, in each of which two lobes of an orbital on one atom overlap with two lobes of an orbital on another atom, and in which this overlap occurs laterally. Each of these atomic orbitals ...
s and the sigma electrons in the C-N bond in the reactants
LUMO In chemistry, HOMO and LUMO are types of molecular orbitals. The acronyms stand for ''highest occupied molecular orbital'' and ''lowest unoccupied molecular orbital'', respectively. HOMO and LUMO are sometimes collectively called the ''frontie ...
.


Phanes

Generalization of cyclophanes led to the concept of
phanes Phanes ( grc, Φάνης, Phánēs, genitive ) or Protogonus () was the mystic primeval deity of procreation and the generation of new life, who was introduced into Greek mythology by the Orphic tradition; other names for this Classical Gree ...
in the IUPAC nomenclature. The systematic phane nomenclature name for e.g. 4etacyclophane is 1(1,3)-benzenacyclopentadecaphane;
and .2'aracyclophane (or .2aracyclophane) is 1,4(1,4)-dibenzenacyclohexaphane.


See also

*
Cycloparaphenylene A cycloparaphenylene is a molecule that consists of several benzene rings connected by covalent bonds in the para positions to form a hoop- or necklace-like structure. Its chemical formula is or Such a molecule is usually denoted 'n''PP where ...
, cyclic all-para-linked phenyl groups. *
Calixarenes A calixarene is a macrocycle or Cyclic compound, cyclic oligomer based on a Methylene group, methylene-linked phenols. With hydrophobic cavities that can hold smaller molecules or ions, calixarenes belong to the class of cavitands known in host–g ...


General sources

* B. H. Smith, Bridged Aromatic Compounds, Academic Press, New York, 1964. * P. M. Keehn, S. M. Rosenfeld (eds.),Cyclophanes, Vols. 1 and 2, Academic Press,New York, 1983. * F. Vögtle, F., G. Hohner, Top. Curr. Chem. 1978, 74, 1 * F. Vögtle, P. Neumann, Top. Curr. Chem. 1983, 113, 1; 1985, 115, 1.


References

{{Reflist Cyclophanes