This list of sequence alignment software is a compilation of software tools and web portals used in pairwise

sequence alignment In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Alig ...

and multiple sequence alignment. See

structural alignment software This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison A structure is an arrangement and organization of interrelated elements in a material ...

for

structural alignment Structural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also be used for large RN ...

of proteins.

Database search only

*Sequence type: protein or nucleotide

Pairwise alignment

*Sequence type: protein or nucleotide **Alignment type: local or global

Multiple sequence alignment

*Sequence type: protein or nucleotide. **Alignment type: local or global

Genomics analysis

*Sequence type: protein or nucleotide

Motif finding

*Sequence type: protein or nucleotide

Benchmarking

Alignment viewers, editors

Please see

List of alignment visualization software This page is a subsection of the list of sequence alignment software. Multiple alignment visualization tools typically serve four purposes: * Aid general understanding of large-scale DNA or protein alignments * Visualize alignments for figures and ...

Short-read sequence alignment

References

{{Reflist

Sequence In mathematics, a sequence is an enumerated collection of objects in which repetitions are allowed and order matters. Like a set, it contains members (also called ''elements'', or ''terms''). The number of elements (possibly infinite) is calle ...

Sequence alignment software This list of sequence alignment software is a compilation of software tools and web portals used in pairwise sequence alignment and multiple sequence alignment. See structural alignment software for structural alignment of proteins. Database sear ...

Database search only

Pairwise alignment

Multiple sequence alignment

Genomics analysis

Motif finding

Benchmarking

Alignment viewers, editors

Short-read sequence alignment

See also

References