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Data Curation
Data curation is the organization and integration of data collected from various sources. It involves annotation, publication and presentation of the data such that the value of the data is maintained over time, and the data remains available for reuse and preservation. Data curation includes "all the processes needed for principled and controlled data creation, maintenance, and management, together with the capacity to add value to data". In science, data curation may indicate the process of extraction of important information from scientific texts, such as research articles by experts, to be converted into an electronic format, such as an entry of a biological database. In the modern era of big data, the curation of data has become more prominent, particularly for software processing high volume and complex data systems. The term is also used in historical occasions and the humanities, where increasing cultural and scholarly data from digital humanities projects requires the expe ...
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Data
In the pursuit of knowledge, data (; ) is a collection of discrete values that convey information, describing quantity, quality, fact, statistics, other basic units of meaning, or simply sequences of symbols that may be further interpreted. A datum is an individual value in a collection of data. Data is usually organized into structures such as tables that provide additional context and meaning, and which may themselves be used as data in larger structures. Data may be used as variables in a computational process. Data may represent abstract ideas or concrete measurements. Data is commonly used in scientific research, economics, and in virtually every other form of human organizational activity. Examples of data sets include price indices (such as consumer price index), unemployment rates, literacy rates, and census data. In this context, data represents the raw facts and figures which can be used in such a manner in order to capture the useful information out of it. ...
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DataONE
DataONE is a network of interoperable data repositories facilitating data sharing, data discovery, and open science. Originally supported by $21.2 million in funding from the US National Science Foundation as one of the initial DataNet programs in 2009, funding was renewed in 2014 through 2020 with an additional $15 million. DataONE helps preserve, access, use, and reuse of multi-discipline scientific data through the construction of primary cyberinfrastructure and an education and outreach program. DataONE provides scientific data archiving for ecological and environmental data produced by scientists. DataONE's goal is to preserve and provide access to multi-scale, multi-discipline, and multi-national data. Users include scientists, ecosystem managers, policy makers, students, educators, librarians, and the public. DataONE links together existing cyberinfrastructure to provide a distributed framework, management, and technologies that enable long-term preservation of multi-scal ...
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DataNet
DataNet, or Sustainable Digital Data Preservation and Access Network Partner was a research program of the U.S. National Science Foundation Office of Cyberinfrastructure. The office announced a request for proposals with this title on September 28, 2007. The lead paragraph of its synopsis describes the program as: Science and engineering research and education are increasingly digital and increasingly data-intensive. Digital data are not only the output of research but provide input to new hypotheses, enabling new scientific insights and driving innovation. Therein lies one of the major challenges of this scientific generation: how to develop the new methods, management structures and technologies to manage the diversity, size, and complexity of current and future data sets and data streams. This solicitation addresses that challenge by creating a set of exemplar national and global data research infrastructure organizations (dubbed DataNet Partners) that provide unique opportun ...
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Jim Gray (computer Scientist)
James Nicholas Gray (1944 – declared dead in absentia 2012) was an American computer scientist who received the Turing Award in 1998 "for seminal contributions to database and transaction processing research and technical leadership in system implementation". Early years and personal life Gray was born in San Francisco, the second child of Ann Emma Sanbrailo, a teacher, and James Able Gray, who was in the U.S. Army; the family moved to Rome, Italy, where Gray spent most of the first three years of his life; he learned to speak Italian before English. The family then moved to Virginia, spending about four years there, until Gray's parents divorced, after which he returned to San Francisco with his mother. His father, an amateur inventor, patented a design for a ribbon cartridge for typewriters that earned him a substantial royalty stream. After being turned down for the Air Force Academy he entered the University of California, Berkeley as a freshman in 1961. To help pay for col ...
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Sloan Digital Sky Survey
The Sloan Digital Sky Survey or SDSS is a major multi-spectral imaging and spectroscopic redshift survey using a dedicated 2.5-m wide-angle optical telescope at Apache Point Observatory in New Mexico, United States. The project began in 2000 and was named after the Alfred P. Sloan Foundation, which contributed significant funding. A consortium of the University of Washington and Princeton University was established to conduct a redshift survey. The Astrophysical Research Consortium (ARC) was established in 1984 with the additional participation of New Mexico State University and Washington State University to manage activities at Apache Point. In 1991 the Sloan Foundation granted the ARC funding for survey efforts and the construction of equipment to carry out the work.. Background At the time of its design, the SDSS was a pioneering combination of novel instrumentation as well as data reduction and storage techniques that drove major advances in astronomical observations, di ...
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Linguistic Data Consortium
The Linguistic Data Consortium is an open consortium of universities, companies and government research laboratories. It creates, collects and distributes speech and text databases, lexicons, and other resources for linguistics research and development purposes. The University of Pennsylvania is the LDC's host institution. The LDC was founded in 1992 with a grant from the US Defense Advanced Research Projects Agency (DARPA), and is partly supported by grant IRI-9528587 from the Information and Intelligent Systems division of the National Science Foundation. The director of LDC is Mark Liberman and the executive director is Christopher Cieri. See also *Corpus linguistics *Cross-Linguistic Linked Data (CLLD) – project coordinating over a dozen linguistics databases; hosted by the Max Planck Institute (Germany) *European Language Resources Association (ELRA) – a Luxembourg- and France-based institute with a mission similar to LDC's * Language Grid – a platform for language resour ...
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Drosophila Melanogaster
''Drosophila melanogaster'' is a species of fly (the taxonomic order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly" or "pomace fly". Starting with Charles W. Woodworth's 1901 proposal of the use of this species as a model organism, ''D. melanogaster'' continues to be widely used for biological research in genetics, physiology, microbial pathogenesis, and life history evolution. As of 2017, five Nobel Prizes have been awarded to drosophilists for their work using the insect. ''D. melanogaster'' is typically used in research owing to its rapid life cycle, relatively simple genetics with only four pairs of chromosomes, and large number of offspring per generation. It was originally an African species, with all non-African lineages having a common origin. Its geographic range includes all continents, including islands. ''D. melanogaster'' is a common pest in homes, restaurants, and othe ...
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Drosophilidae
The Drosophilidae are a diverse, cosmopolitan family of flies, which includes species called fruit flies, although they are more accurately referred to as vinegar or pomace flies. Another distantly related family of flies, Tephritidae, are true fruit flies because they are frugivorous, and include apple maggot flies and many pests. The best known species of the Drosophilidae is ''Drosophila melanogaster'', within the genus ''Drosophila'', also called the "fruit fly." ''Drosophila melanogaster'' is used extensively for studies concerning genetics, development, physiology, ecology and behaviour. Many fundamental biological mechanisms were discovered first in ''D. melanogaster.'' The fruit fly is mostly composed of post-mitotic cells, has a very short lifespan, and shows gradual aging. As in other species, temperature influences the life history of the animal. Several genes have been identified that can be manipulated to extend the lifespan of these insects. Additionally, ''Drosophi ...
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FlyBase
FlyBase is an online bioinformatics database and the primary repository of genetic and molecular data for the insect family Drosophilidae. For the most extensively studied species and model organism, ''Drosophila melanogaster'', a wide range of data are presented in different formats. Information in FlyBase originates from a variety of sources ranging from large-scale genome projects to the primary research literature. These data types include mutant phenotypes; molecular characterization of mutant alleles; and other deviations, cytological maps, wild-type expression patterns, anatomical images, transgenic constructs and insertions, sequence-level gene models, and molecular classification of gene product functions. Query tools allow navigation of FlyBase through DNA or protein sequence, by gene or mutant name, or through terms from the several ontologies used to capture functional, phenotypic, and anatomical data. The database offers several different query tools in order to prov ...
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Brookhaven National Laboratory
Brookhaven National Laboratory (BNL) is a United States Department of Energy national laboratory located in Upton, Long Island, and was formally established in 1947 at the site of Camp Upton, a former U.S. Army base and Japanese internment camp. Its name stems from its location within the Town of Brookhaven, approximately 60 miles east of New York City. It is managed by Stony Brook University and Battelle Memorial Institute. Research at BNL includes nuclear and high energy physics, energy science and technology, environmental and bioscience, nanoscience, and national security. The 5,300 acre campus contains several large research facilities, including the Relativistic Heavy Ion Collider and National Synchrotron Light Source II. Seven Nobel Prizes have been awarded for work conducted at Brookhaven Lab. Overview BNL is staffed by approximately 2,750 scientists, engineers, technicians, and support personnel, and hosts 4,000 guest investigators every year. The laboratory has ...
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Protein Data Bank
The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules, such as proteins and nucleic acids. The data, typically obtained by X-ray crystallography, NMR spectroscopy, or, increasingly, cryo-electron microscopy, and submitted by biologists and biochemists from around the world, are freely accessible on the Internet via the websites of its member organisations (PDBe, PDBj, RCSB, and BMRB). The PDB is overseen by an organization called the Worldwide Protein Data Bank, wwPDB. The PDB is a key in areas of structural biology, such as structural genomics. Most major scientific journals and some funding agencies now require scientists to submit their structure data to the PDB. Many other databases use protein structures deposited in the PDB. For example, SCOP and CATH classify protein structures, while PDBsum provides a graphic overview of PDB entries using information from other sources, such as Gene ontology. History Two force ...
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