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Chordal Completion
In graph theory, a branch of mathematics, a chordal completion of a given undirected graph is a chordal graph, on the same vertex set, that has as a subgraph. A minimal chordal completion is a chordal completion such that any graph formed by removing an edge would no longer be a chordal completion. A minimum chordal completion is a chordal completion with as few edges as possible. A different type of chordal completion, one that minimizes the size of the maximum clique in the resulting chordal graph, can be used to define the treewidth of . Chordal completions can also be used to characterize several other graph classes including AT-free graphs, claw-free AT-free graphs, and cographs. The minimum chordal completion was one of twelve computational problems whose complexity was listed as open in the 1979 book '' Computers and Intractability''. Applications of chordal completion include modeling the problem of minimizing fill-in when performing Gaussian elimination on sparse symme ...
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Graph Theory
In mathematics, graph theory is the study of ''graphs'', which are mathematical structures used to model pairwise relations between objects. A graph in this context is made up of '' vertices'' (also called ''nodes'' or ''points'') which are connected by '' edges'' (also called ''links'' or ''lines''). A distinction is made between undirected graphs, where edges link two vertices symmetrically, and directed graphs, where edges link two vertices asymmetrically. Graphs are one of the principal objects of study in discrete mathematics. Definitions Definitions in graph theory vary. The following are some of the more basic ways of defining graphs and related mathematical structures. Graph In one restricted but very common sense of the term, a graph is an ordered pair G=(V,E) comprising: * V, a set of vertices (also called nodes or points); * E \subseteq \, a set of edges (also called links or lines), which are unordered pairs of vertices (that is, an edge is associated with t ...
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Pathwidth
In graph theory, a path decomposition of a graph is, informally, a representation of as a "thickened" path graph, and the pathwidth of is a number that measures how much the path was thickened to form . More formally, a path-decomposition is a sequence of subsets of vertices of such that the endpoints of each edge appear in one of the subsets and such that each vertex appears in a contiguous subsequence of the subsets,. and the pathwidth is one less than the size of the largest set in such a decomposition. Pathwidth is also known as interval thickness (one less than the maximum clique size in an interval supergraph of ), vertex separation number, or node searching number. Pathwidth and path-decompositions are closely analogous to treewidth and tree decompositions. They play a key role in the theory of graph minors: the families of graphs that are closed under graph minors and do not include all forests may be characterized as having bounded pathwidth, and the "vortices ...
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NP-complete
In computational complexity theory, a problem is NP-complete when: # it is a problem for which the correctness of each solution can be verified quickly (namely, in polynomial time) and a brute-force search algorithm can find a solution by trying all possible solutions. # the problem can be used to simulate every other problem for which we can verify quickly that a solution is correct. In this sense, NP-complete problems are the hardest of the problems to which solutions can be verified quickly. If we could find solutions of some NP-complete problem quickly, we could quickly find the solutions of every other problem to which a given solution can be easily verified. The name "NP-complete" is short for "nondeterministic polynomial-time complete". In this name, "nondeterministic" refers to nondeterministic Turing machines, a way of mathematically formalizing the idea of a brute-force search algorithm. Polynomial time refers to an amount of time that is considered "quick" for a de ...
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Open Problem
In science and mathematics, an open problem or an open question is a known problem which can be accurately stated, and which is assumed to have an objective and verifiable solution, but which has not yet been solved (i.e., no solution for it is known). In the history of science, some of these supposed open problems were "solved" by means of showing that they were not well-defined. In mathematics, many open problems are concerned with the question of whether a certain definition is or is not consistent. Two notable examples in mathematics that have been solved and ''closed'' by researchers in the late twentieth century are Fermat's Last Theorem and the four-color theorem.K. Appel and W. Haken (1977), "Every planar map is four colorable. Part I. Discharging", ''Illinois J. Math'' 21: 429–490. K. Appel, W. Haken, and J. Koch (1977), "Every planar map is four colorable. Part II. Reducibility", ''Illinois J. Math'' 21: 491–567. An important open mathematics problem solved i ...
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Discrete Mathematics (journal)
''Discrete Mathematics'' is a biweekly peer-reviewed scientific journal in the broad area of discrete mathematics, combinatorics, graph theory, and their applications. It was established in 1971 and is published by North-Holland Publishing Company. It publishes both short notes, full length contributions, as well as survey articles. In addition, the journal publishes a number of special issues each year dedicated to a particular topic. Although originally it published articles in French and German, it now allows only English language articles. The editor-in-chief is Douglas West ( University of Illinois, Urbana). History The journal was established in 1971. The very first article it published was written by Paul Erdős, who went on to publish a total of 84 papers in the journal. Abstracting and indexing The journal is abstracted and indexed in: According to the ''Journal Citation Reports'', the journal has a 2020 impact factor of 0.87. Notable publications * The 1972 ...
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Graph Coloring
In graph theory, graph coloring is a special case of graph labeling; it is an assignment of labels traditionally called "colors" to elements of a graph subject to certain constraints. In its simplest form, it is a way of coloring the vertices of a graph such that no two adjacent vertices are of the same color; this is called a vertex coloring. Similarly, an edge coloring assigns a color to each edge so that no two adjacent edges are of the same color, and a face coloring of a planar graph assigns a color to each face or region so that no two faces that share a boundary have the same color. Vertex coloring is often used to introduce graph coloring problems, since other coloring problems can be transformed into a vertex coloring instance. For example, an edge coloring of a graph is just a vertex coloring of its line graph, and a face coloring of a plane graph is just a vertex coloring of its dual. However, non-vertex coloring problems are often stated and studied as-is. This is ...
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Perfect Phylogeny
Perfect phylogeny is a term used in computational phylogenetics to denote a phylogenetic tree in which all internal nodes may be labeled such that all characters evolve down the tree without homoplasy. That is, characteristics do not hold to evolutionary convergence, and do not have analogous structures. Statistically, this can be represented as an ancestor having state "0" in all characteristics where 0 represents a lack of that characteristic. Each of these characteristics changes from 0 to 1 exactly once and never reverts to state 0. It is rare that actual data adheres to the concept of perfect phylogeny. Building In general there are two different data types that are used in the construction of a phylogenetic tree. In distance-based computations a phylogenetic tree is created by analyzing relationships among the distance between species and the edge lengths of a corresponding tree. Using a character-based approach employs character states across species as an input in an ...
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Phylogeny
A phylogenetic tree (also phylogeny or evolutionary tree Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA.) is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. All life on Earth is part of a single phylogenetic tree, indicating common ancestry. In a ''rooted'' phylogenetic tree, each node with descendants represents the inferred most recent common ancestor of those descendants, and the edge lengths in some trees may be interpreted as time estimates. Each node is called a taxonomic unit. Internal nodes are generally called hypothetical taxonomic units, as they cannot be directly observed. Trees are useful in fields of biology such as bioinformatics, systematics, and phylogenetics. ''Unrooted'' trees illustrate only the relatedness of the leaf nodes and do not require the ancestral root to be ...
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Journal Of Combinatorial Theory
The ''Journal of Combinatorial Theory'', Series A and Series B, are mathematical journals specializing in combinatorics and related areas. They are published by Elsevier. ''Series A'' is concerned primarily with structures, designs, and applications of combinatorics. ''Series B'' is concerned primarily with graph and matroid theory. The two series are two of the leading journals in the field and are widely known as ''JCTA'' and ''JCTB''. The journal was founded in 1966 by Frank Harary and Gian-Carlo Rota.They are acknowledged on the journals' title pages and Web sites. SeEditorial board of JCTAEditorial board of JCTB
Originally there was only one journal, which was split into two parts in 1971 as the field grew rapidly. An electronic,
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Planar Separator Theorem
In graph theory, the planar separator theorem is a form of isoperimetric inequality for planar graphs, that states that any planar graph can be split into smaller pieces by removing a small number of vertices. Specifically, the removal of vertices from an -vertex graph (where the invokes big O notation) can partition the graph into disjoint subgraphs each of which has at most vertices. A weaker form of the separator theorem with vertices in the separator instead of was originally proven by , and the form with the tight asymptotic bound on the separator size was first proven by . Since their work, the separator theorem has been reproven in several different ways, the constant in the term of the theorem has been improved, and it has been extended to certain classes of nonplanar graphs. Repeated application of the separator theorem produces a separator hierarchy which may take the form of either a tree decomposition or a branch-decomposition of the graph. Separator hierarc ...
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Adjacency Matrix
In graph theory and computer science, an adjacency matrix is a square matrix used to represent a finite graph. The elements of the matrix indicate whether pairs of vertices are adjacent or not in the graph. In the special case of a finite simple graph, the adjacency matrix is a (0,1)-matrix with zeros on its diagonal. If the graph is undirected (i.e. all of its edges are bidirectional), the adjacency matrix is symmetric. The relationship between a graph and the eigenvalues and eigenvectors of its adjacency matrix is studied in spectral graph theory. The adjacency matrix of a graph should be distinguished from its incidence matrix, a different matrix representation whose elements indicate whether vertex–edge pairs are incident or not, and its degree matrix, which contains information about the degree of each vertex. Definition For a simple graph with vertex set , the adjacency matrix is a square matrix such that its element is one when there is an edge from vertex to ...
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Symmetric Matrix
In linear algebra, a symmetric matrix is a square matrix that is equal to its transpose. Formally, Because equal matrices have equal dimensions, only square matrices can be symmetric. The entries of a symmetric matrix are symmetric with respect to the main diagonal. So if a_ denotes the entry in the ith row and jth column then for all indices i and j. Every square diagonal matrix is symmetric, since all off-diagonal elements are zero. Similarly in characteristic different from 2, each diagonal element of a skew-symmetric matrix must be zero, since each is its own negative. In linear algebra, a real symmetric matrix represents a self-adjoint operator represented in an orthonormal basis over a real inner product space. The corresponding object for a complex inner product space is a Hermitian matrix with complex-valued entries, which is equal to its conjugate transpose. Therefore, in linear algebra over the complex numbers, it is often assumed that a symmetric matrix refe ...
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