Bx1 Benzoxazin1
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Bx1 Benzoxazin1
Function Maize gene for first step in biosynthesis of benzoxazin, which aids in resistance to insect pests, pathogenic fungi and bacteria. First report Hamilton 1964, as a mutant sensitive to the herbicide atrazine, and lacking benzoxazinoids (less than 1% of non-mutant plants). Molecular characterization reveals that the BX1 protein is a homologue to the alpha-subunit of tryptophan synthase. The reference mutant allele has a deletion of about 900 bp, located at the 5'-terminus and comprising sequence upstream of the transcription start site and the first exon. Additional alleles are given by a ''Mu'' transposon insertion in the fourth exon (Frey et al. 1997 ) and a ''Ds'' transposon insertion in the maize inbred line W22 genetic background (Betsiashvili et al. 2014). Gene sequence diversity analysis has been performed for 281 inbred lines of maize, and the results suggest that bx1 is responsible for much of the natural variation in DIMBOA (a benzoxazinoid compound) synth ...
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Maize
Maize ( ; ''Zea mays'' subsp. ''mays'', from es, maíz after tnq, mahiz), also known as corn (North American and Australian English), is a cereal grain first domesticated by indigenous peoples in southern Mexico about 10,000 years ago. The leafy stalk of the plant produces pollen inflorescences (or "tassels") and separate ovuliferous inflorescences called ears that when fertilized yield kernels or seeds, which are fruits. The term ''maize'' is preferred in formal, scientific, and international usage as a common name because it refers specifically to this one grain, unlike ''corn'', which has a complex variety of meanings that vary by context and geographic region. Maize has become a staple food in many parts of the world, with the total production of maize surpassing that of wheat or rice. In addition to being consumed directly by humans (often in the form of masa), maize is also used for corn ethanol, animal feed and other maize products, such as corn starch and ...
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Simple Sequence Repeat
A microsatellite is a tract of repetitive DNA in which certain DNA motifs (ranging in length from one to six or more base pairs) are repeated, typically 5–50 times. Microsatellites occur at thousands of locations within an organism's genome. They have a higher mutation rate than other areas of DNA leading to high genetic diversity. Microsatellites are often referred to as short tandem repeats (STRs) by forensic geneticists and in genetic genealogy, or as simple sequence repeats (SSRs) by plant geneticists. Microsatellites and their longer cousins, the minisatellites, together are classified as VNTR (variable number of tandem repeats) DNA. The name "satellite" DNA refers to the early observation that centrifugation of genomic DNA in a test tube separates a prominent layer of bulk DNA from accompanying "satellite" layers of repetitive DNA. They are widely used for DNA profiling in cancer diagnosis, in kinship analysis (especially paternity testing) and in forensic ident ...
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Chloroplast
A chloroplast () is a type of membrane-bound organelle known as a plastid that conducts photosynthesis mostly in plant and algal cells. The photosynthetic pigment chlorophyll captures the energy from sunlight, converts it, and stores it in the energy-storage molecules ATP and NADPH while freeing oxygen from water in the cells. The ATP and NADPH is then used to make organic molecules from carbon dioxide in a process known as the Calvin cycle. Chloroplasts carry out a number of other functions, including fatty acid synthesis, amino acid synthesis, and the immune response in plants. The number of chloroplasts per cell varies from one, in unicellular algae, up to 100 in plants like ''Arabidopsis'' and wheat. A chloroplast is characterized by its two membranes and a high concentration of chlorophyll. Other plastid types, such as the leucoplast and the chromoplast, contain little chlorophyll and do not carry out photosynthesis. Chloroplasts are highly dynamic—they circulat ...
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Indole-3-glycerol-phosphate Lyase
The enzyme indole-3-glycerol-phosphate lyase () catalyzes the chemical reaction :(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate \rightleftharpoons indole + D-glyceraldehyde 3-phosphate This enzyme belongs to the family of lyase In biochemistry, a lyase is an enzyme that catalyzes the breaking (an elimination reaction) of various chemical bonds by means other than hydrolysis (a substitution reaction) and oxidation, often forming a new double bond or a new ring structure. ...s, specifically the aldehyde-lyases, which cleave carbon-carbon bonds. The systematic name of this enzyme class is (1S,2R)-1-C-(indol-3-yl)glycerol-3-phosphate D-glyceraldehyde-3-phosphate-lyase (indole-forming). Other names in common use include tryptophan synthase alpha, TSA, indoleglycerolphosphate aldolase, indole glycerol phosphate hydrolase, indole synthase, indole-3-glycerolphosphate D-glyceraldehyde-3-phosphate-lyase, indole-3-glycerol phosphate lyase, IGL, BX1, (1S,2R)-1-C-(indol-3-yl)glycerol 3-p ...
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Enzyme
Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. Almost all metabolic processes in the cell need enzyme catalysis in order to occur at rates fast enough to sustain life. Metabolic pathways depend upon enzymes to catalyze individual steps. The study of enzymes is called ''enzymology'' and the field of pseudoenzyme analysis recognizes that during evolution, some enzymes have lost the ability to carry out biological catalysis, which is often reflected in their amino acid sequences and unusual 'pseudocatalytic' properties. Enzymes are known to catalyze more than 5,000 biochemical reaction types. Other biocatalysts are catalytic RNA molecules, called ribozymes. Enzymes' specificity comes from their unique three-dimensional structures. Like all catalysts, enzymes increase the reaction ra ...
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Indole
Indole is an aromatic heterocyclic organic compound with the formula C8 H7 N. It has a bicyclic structure, consisting of a six-membered benzene ring fused to a five-membered pyrrole ring. Indole is widely distributed in the natural environment and can be produced by a variety of bacteria. As an intercellular signal molecule, indole regulates various aspects of bacterial physiology, including spore formation, plasmid stability, resistance to drugs, biofilm formation, and virulence. The amino acid tryptophan is an indole derivative and the precursor of the neurotransmitter serotonin. General properties and occurrence Indole is a solid at room temperature. It occurs naturally in human feces and has an intense fecal odor. At very low concentrations, however, it has a flowery smell, and is a constituent of many perfumes. It also occurs in coal tar. The corresponding substituent is called indolyl. Indole undergoes electrophilic substitution, mainly at position 3 (see diagra ...
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Spodoptera Littoralis
''Spodoptera littoralis'', also referred to as the African cotton leafworm or Egyptian cotton leafworm or Mediterranean brocade, is a species of moth in the family Noctuidae. ''S. littoralis'' is found widely in Africa, Southern Europe, Mediterranean Europe and Middle East, Middle Eastern countries. It is a highly polyphagous organism that is a pest of many cultivated plants and crops. As a result, this species was assigned the label of A2 quarantine pest by the European and Mediterranean Plant Protection Organization, EPPO and was cautioned as a highly invasive species in the United States. The devastating impacts caused by these pests have led to the development of both biological and chemical control methods. This moth is often confused with ''Spodoptera litura''. Taxonomy Egyptian cotton leafworm is one of the many species of genus ''Spodoptera'' and family Noctuidae. The family Noctuidae was named by a French zoologist, Pierre André Latreille, in 1809 and the genus Noctuid ...
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Spodoptera Exigua
The beet armyworm or small mottled willow moth (''Spodoptera exigua'') is one of the best-known agricultural pest insects. It is also known as the asparagus fern caterpillar. It is native to Asia, but has been introduced worldwide and is now found almost anywhere its many host crops are grown. The voracious larvae are the main culprits. In the British Isles, where it is an introduced species and not known to breed, the adult moth is known as the small mottled willow moth. Discovery Thought to have originated in south-east Asian countries, it was first discovered in North America about 1876, when it was found in Oregon, and it reached Florida in 1924. Description The adult is a drab brown or grey moth with a wingspan of . Forewing is greyish ochreous in color, washed with dull yellow and sprinkled with black scales. Inner and outer lines are double, indistinct, filled in with pale yellowish color. A dark waved median shade visible before lower half of outer line. Cell is dark ...
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Rhopalosiphum Maidis
''Rhopalosiphum maidis'', common names corn leaf aphid and corn aphid, is an insect, and a pest of maize and other crops. It has a nearly worldwide distribution and is typically found in agricultural fields, grasslands, and forest-grassland zones. Among aphids that feed on maize, it is the most commonly encountered and most economically damaging, particularly in tropical and warmer temperate areas. In addition to maize, ''R. maidis'' damages rice, sorghum, and other cultivated and wild monocots. Description The bodies of wingless parthenogenetic females are green or whitish-green. The head, antennae, legs, cornicles, tail, and transverse bands on the abdomen are black-brown. The body has sparse short hairs. The length of the antennae is less than half the length of the body. Cornicles are not longer than the finger-like tail. In winged females, the head and thoracic section are black-brown and the cornicles are shorter than in the wingless females. Most ''R. maidis'' po ...
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Cis-regulatory Element
''Cis''-regulatory elements (CREs) or ''Cis''-regulatory modules (CRMs) are regions of non-coding DNA which regulate the transcription of neighboring genes. CREs are vital components of genetic regulatory networks, which in turn control morphogenesis, the development of anatomy, and other aspects of embryonic development, studied in evolutionary developmental biology. CREs are found in the vicinity of the genes that they regulate. CREs typically regulate gene transcription by binding to transcription factors. A single transcription factor may bind to many CREs, and hence control the expression of many genes ( pleiotropy). The Latin prefix ''cis'' means "on this side", i.e. on the same molecule of DNA as the gene(s) to be transcribed. CRMs are stretches of DNA, usually 100–1000 DNA base pairs in length, where a number of transcription factors can bind and regulate expression of nearby genes and regulate their transcription rates. They are labeled as ''cis'' because they are ...
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Recombinant Inbred Strain
A recombinant inbred strain or recombinant inbred line (RIL) is an organism with chromosomes that incorporate an essentially permanent set of recombination events between chromosomes inherited from two or more inbred strains. F1 and F2 generations are produced by intercrossing the inbred strains; pairs of the F2 progeny are then mated to establish inbred strains through long-term inbreeding. Families of recombinant inbred strains numbering from 25 to 5000 are often used to map the locations of DNA sequence differences (quantitative trait loci) that contributed to differences in phenotype in model organisms. Recombinant inbred strains or lines were first developed using inbred strains of mice but are now used to study a wide range of organisms – ''Saccharomyces cerevisiae'' (yeast), ''Zea mays'' (maize), barley, ''Drosophila melanogaster'', ''C. elegans'' and rat. History The origins and history of recombinant inbred strains are described by Crow. While the potential utility of r ...
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Chitosan
Chitosan is a linear polysaccharide composed of randomly distributed β-(1→4)-linked Glucosamine, D-glucosamine (deacetylated unit) and N-Acetylglucosamine, ''N''-acetyl-D-glucosamine (acetylated unit). It is made by treating the chitin shells of shrimp and other crustaceans with an alkaline substance, such as sodium hydroxide. Chitosan has a number of commercial and possible biomedical uses. It can be used in agriculture as a seed treatment and biopesticide, helping plants to fight off fungal infections. In winemaking, it can be used as a fining agent, also helping to prevent spoilage. In industry, it can be used in a self-healing polyurethane paint coating. In medicine, it is useful in bandages to reduce bleeding and as an antibacterial agent; it can also be used to help deliver drugs through the skin. Manufacture and properties Chitosan is produced commercially by acetylation, deacetylation of chitin, which is the structural wikt:element, element in the exoskeleton of c ...
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