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Xi River Virus
Xi River virus (XRV) is a putative novel bat virus in the genus ''Orthoreovirus'' isolated from fruit bats in Guangdong Province in southern China. It is the first bat reovirus isolated in China. Virology Genome Only a partial sequence of XRV was isolated from the fruit bat, but based on its open reading frame it was identified as a reovirus. XRV has the same morphology and high sequence identity as Nelson Bay virus (NBV), and a 10-segmented double-stranded RNA genome, as well as high sequence identity to NBV members.MicrobiologyBytes – Reoviruses Reoviruses are non-enveloped, double-stranded RNA viruses. They have an |
Putative Gene
A putative gene is a segment of DNA that is believed to be a gene. Putative genes can share sequence similarities to already characterized genes and thus can be inferred to share a similar function, yet the exact function of putative genes remains unknown. Newly identified sequences are considered putative gene candidates when Homology (biology), homologs of those sequences are found to be associated with the phenotype of interest. Examples Examples of studies involving putative genes include the discovery of 30 putative receptor genes found in rat vomeronasal organ (VNO) and the identification of 79 putative TATA boxes found in many plant genomes. Practical importance In order to define and characterize a biosynthetic gene cluster, all the putative genes within said cluster must first be identified and their functions must be characterized. This can be performed by complementation and knock out experiments. In the process of characterizing putative genes, the genome under study ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Icosahedron
In geometry, an icosahedron ( or ) is a polyhedron with 20 faces. The name comes and . The plural can be either "icosahedra" () or "icosahedrons". There are infinitely many non- similar shapes of icosahedra, some of them being more symmetrical than others. The best known is the (convex, non- stellated) regular icosahedron—one of the Platonic solids—whose faces are 20 equilateral triangles. Regular icosahedra There are two objects, one convex and one nonconvex, that can both be called regular icosahedra. Each has 30 edges and 20 equilateral triangle faces with five meeting at each of its twelve vertices. Both have icosahedral symmetry. The term "regular icosahedron" generally refers to the convex variety, while the nonconvex form is called a ''great icosahedron''. Convex regular icosahedron The convex regular icosahedron is usually referred to simply as the ''regular icosahedron'', one of the five regular Platonic solids, and is represented by its Schläfli symbol , con ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Orphan Virus
An orphan virus is a virus that is not associated with a disease but may possess pathogenicity. Some orphan viruses include adeno-associated virus (Parvoviridae), human herpesvirus 7 (Herpesviridae), human foamy virus (Retroviridae), Human Reovirus (Reoviridae), hepatitis G (Flaviviridae), and TT virus (Anelloviridae). Gilbert Dalldorf, a pathologist who showed that Coxsackie viruses paralyze mice but not humans, indicated that the term ‘orphan’ was created "in a moment of conviviality" by a group of virologists.Mortimer, Philip P. "Orphan Viruses, Orphan Diseases: Still the Raw Material for Virus Discovery." Reviews in Medical Virology 23.6 (2013): 337-39. Web. Many enteroviruses are referred to as ECHO, enteric cytopathic human orphan viruses, because they were originally not associated with any disease. Even though many of them are associated with severe diseases, the name ECHO still continues to be used. See also *Novel virus *Reoviridae *Viral metagenomics Viral me ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Oncolytic Virus
An oncolytic virus is a virus that preferentially infects and kills cancer cells. As the infected cancer cells are destroyed by lysis#Oncolysis, oncolysis, they release new infectious virus particles or virus, virions to help destroy the remaining tumour. Oncolytic viruses are thought not only to cause direct destruction of the tumour cells, but also to stimulate host anti-tumour innate immune system, immune system responses. Oncolytic viruses also have the ability to affect the tumor micro-environment in multiples ways. The potential of viruses as anti-cancer agents was first realised in the early twentieth century, although coordinated research efforts did not begin until the 1960s. A number of viruses including adenoviridae, adenovirus, reoviridae, reovirus, measles virus, measles, herpes simplex virus, herpes simplex, Newcastle disease, Newcastle disease virus, and vaccinia have been clinically tested as oncolytic agents. Most current oncolytic viruses are engineered for tumou ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Double-stranded RNA Viruses
Double-stranded RNA viruses (dsRNA viruses) are a polyphyletic group of viruses that have double-stranded genomes made of ribonucleic acid. The double-stranded genome is used to transcribe a positive-strand RNA by the viral RNA-dependent RNA polymerase (RdRp). The positive-strand RNA may be used as messenger RNA (mRNA) which can be translated into viral proteins by the host cell's ribosomes. The positive-strand RNA can also be replicated by the RdRp to create a new double-stranded viral genome. Double-stranded RNA viruses are classified in two separate phyla ''Duplornaviricota'' and ''Pisuviricota'' (specifically class ''Duplopiviricetes''), which are in the kingdom ''Orthornavirae'' and realm ''Riboviria''. The two groups do not share a common dsRNA virus ancestor. Double-stranded RNA viruses evolved two separate times from positive-strand RNA viruses. In the Baltimore classification system, dsRNA viruses belong to Group III. Virus group members vary widely in host range (anim ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bat-borne Virus
The bat virome is the group of viruses associated with bats. Bats host a diverse array of viruses, including all seven types described by the Baltimore classification system: (I) double-stranded DNA viruses; (II) single-stranded DNA viruses; (III) double-stranded RNA viruses; (IV) positive-sense single-stranded RNA viruses; (V) negative-sense single-stranded RNA viruses; (VI) positive-sense single-stranded RNA viruses that replicate through a DNA intermediate; and (VII) double-stranded DNA viruses that replicate through a single-stranded RNA intermediate. The greatest share of bat-associated viruses identified as of 2020 are of type IV, in the family ''Coronaviridae''. Bats harbor several viruses that are zoonotic, or capable of infecting humans, and some bat-borne viruses are considered important emerging viruses. These zoonotic viruses include the rabies virus, SARS-CoV, MERS-CoV, Marburg virus, Nipah virus, and Hendra virus. While research clearly indicates that S ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Capsid
A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may not correspond to individual proteins, are called capsomeres. The proteins making up the capsid are called capsid proteins or viral coat proteins (VCP). The capsid and inner genome is called the nucleocapsid. Capsids are broadly classified according to their structure. The majority of the viruses have capsids with either helical or icosahedral structure. Some viruses, such as bacteriophages, have developed more complicated structures due to constraints of elasticity and electrostatics. The icosahedral shape, which has 20 equilateral triangular faces, approximates a sphere, while the helical shape resembles the shape of a spring, taking the space of a cylinder but not being a cylinder itself. The capsid faces may consist of one or more ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nelson Bay Virus
''Nelson Bay orthoreovirus'', often called Nelson Bay virus (NBV) is a novel double-stranded RNA orthoreovirus species first isolated from a flying fox (Pteropus poliocephalus) near Nelson Bay in New South Wales, Australia.Gard G, Compans RW. Structure and cytopathic effects of Nelson Bay virus. J Virol. 1970 Jul;6(1):100–6. Virology Genome The NBV has a morphology similar to other orthoreoviruses, but has a much more rapid cytopathic effect. See also * Bat virome * Double-stranded RNA viruses * Oncolytic virus * Orphan virus * Xi River virus Xi River virus (XRV) is a putative novel bat virus in the genus ''Orthoreovirus'' isolated from fruit bats in Guangdong Province in southern China. It is the first bat reovirus isolated in China. Virology Genome Only a partial sequence of XR ... References External links MicrobiologyBytes€”Reoviruses {{Taxonbar, from=Q15674491 Orthoreoviruses Bat virome ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Orthoreovirus
''Orthoreovirus'' is a genus of viruses, in the family ''Reoviridae'', in the subfamily ''Spinareovirinae''. Vertebrates serve as natural hosts. There are ten species in this genus. Diseases associated with this genus include mild upper respiratory tract disease, gastroenteritis, and biliary atresia. Mammalian orthoreovirus 3 (strain dearing-T3D) induces cell death preferentially in transformed cells and therefore displays inherent oncolytic properties. History The name "orthoreovirus" comes from the Greek word ''ortho'', meaning "straight" and the reovirus, which comes from taking the letters: R, E, and O from "respiratory enteric orphan virus". The Orthoreovirus was named an orphan virus because it was not known to be associated with any known disease. It was discovered in the early 1950s when it was isolated from the respiratory as well as gastrointestinal tracts of both sick and healthy individuals Classification ''Orthoreovirus'' is part of the family ''Reoviridae''. Its g ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Open Reading Frame
In molecular biology, open reading frames (ORFs) are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames will be "open" (the "reading", however, refers to the RNA produced by transcription of the DNA and its subsequent interaction with the ribosome in translation). Such an ORF may contain a start codon (usually AUG in terms of RNA) and by definition cannot extend beyond a stop codon (usually UAA, UAG or UGA in RNA). That start codon (not necessarily the first) indicates where translation may start. The transcription termination site is located after the ORF, beyond the translation stop codon. If transcription were to cease before the stop codon, an incomplete protein would be made during translation. In eukaryotic genes with multiple exons, introns are removed and exons are then joined together after transcription to yield the final ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nucleotide Sequence
A nucleic acid sequence is a succession of bases signified by a series of a set of five different letters that indicate the order of nucleotides forming alleles within a DNA (using GACT) or RNA (GACU) molecule. By convention, sequences are usually presented from the 5' end to the 3' end. For DNA, the sense strand is used. Because nucleic acids are normally linear (unbranched) polymers, specifying the sequence is equivalent to defining the covalent structure of the entire molecule. For this reason, the nucleic acid sequence is also termed the primary structure. The sequence has capacity to represent information. Biological deoxyribonucleic acid represents the information which directs the functions of an organism. Nucleic acids also have a secondary structure and tertiary structure. Primary structure is sometimes mistakenly referred to as ''primary sequence''. Conversely, there is no parallel concept of secondary or tertiary sequence. Nucleotides Nucleic acids consist ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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