Taxonomic Treatment
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Taxonomic Treatment
Taxonomic treatment refers to a section in a scientific publication documenting the features of a related group of organisms or taxa. Treatments have been the building blocks of how data about taxa are provided, ever since the beginning of modern taxonomy by Linnaeus 1753 for plants and 1758 for animals. Each scientifically described taxon has at least one taxonomic treatment. In today’s publishing, a taxonomic treatment tag is used to delimit such a section. It allows to make this section findable, accessible, interoperable and reusable FAIR data. This is implemented in the Biodiversity Literature Repository, where upon deposition of the treatment a persistent DataCite digital object identifier (DOI) is minted. This includes metadata about the treatment, the source publication and other cited resources, such as figures cited in the treatment. This DOI allows a link from a taxonomic name usage to the respective scientific evidence provided by the author(s), both for human and machin ...
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Plazi
Plazi is a Swiss-based international non-profit association supporting and promoting the development of persistent and openly accessible digital bio-taxonomic literature. Plazi is cofounder of the Biodiversity Literature Repository and is maintaining this digital taxonomic literature repository at Zenodo to provide access to FAIR data converted from taxonomic publications using the TreatmentBank service, enhances submitted taxonomic treatments by creating a version in the XML format Taxpub, and educates about the importance of maintaining open access to scientific discourse and data. It is a contributor to the evolving e-taxonomy in the field of Biodiversity Informatics. The approach was originally developed in a binational National Science Foundation (NSF) and German Research Foundation (DFG) digital library program to the American Museum of Natural History and the University of Karlsruhe, respectively, to create an XML schema modeling the content of bio-systematic literature. ...
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Species Description
A species description is a formal description of a newly discovered species, usually in the form of a scientific paper. Its purpose is to give a clear description of a new species of organism and explain how it differs from species that have been described previously or are related. In order for species to be validly described, they need to follow guidelines established over time. Zoological naming requires adherence to the ICZN code, plants, the ICN, viruses ICTV, and so on. The species description often contains photographs or other illustrations of type material along with a note on where they are deposited. The publication in which the species is described gives the new species a formal scientific name. Some 1.9 million species have been identified and described, out of some 8.7 million that may actually exist. Millions more have become extinct throughout the existence of life on Earth. Naming process A name of a new species becomes valid (available in zo ...
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Consortium Of European Taxonomic Facilities
The Consortium of European Taxonomic Facilities (CETAF) is a taxonomic research network formed by scientific institutions in Europe. It was formed in December 1996 by ten of the largest European natural history museums and botanical gardens to be a voice for taxonomy and systematic biology in Europe, to promote scientific research and access to European natural history collections, and to exploit European funding opportunities. Since then, CETAF has served as a meeting point for major European natural history museums and botanical gardens, and has initiated and played an important role in a number of projects (see ''Initiatives and related projects'' section below). Currently, CETAF has 37 members, which constitute a total of 63 institutions spanning 22 European countries (see ''Members'' section below). One of these members, the Royal Belgian Institute of Natural Sciences, also hosts CETAF's General Secretariat. Together, CETAF institutions hold a large fraction (''c''. 500 m ...
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PhytoKeys
''PhytoKeys'' is a peer-reviewed, open-access online and print botanical journal. Its stated goal is "to support free exchange of ideas and information in systematic botany". Printed issues of the journal are available in the libraries of the United States (Smithsonian Institution, Missouri Botanical Garden), United Kingdom (Natural History Museum, London, Royal Botanic Gardens, Kew), Russia (Komarov Botanical Institute, St. Petersburg) and China (Kunming Institute of Botany, Kunming). Important Articles *Feb, 2015: The discovery of ''Thismia hongkongensis''. *Apr, 2022: The rediscovery of Gasteranthus extinctus ''Gasteranthus extinctus'' is a species of flowering plant in the family Gesneriaceae. It is endemic to Ecuador. Its natural habitat is subtropical or tropical moist montane forests. The species is a small herb that produces bright orange flower .... References External links All ''PhytoKeys'' issues Botany journals Open access journals Pensoft Publishers academic ...
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ZooKeys
''ZooKeys'' is a peer-reviewed open access scientific journal covering zoological taxonomy, phylogeny, and biogeography. It was established in 2008 and the editor-in-chief is Terry Erwin (Smithsonian Institution). It is published by Pensoft Publishers. ''ZooKeys'' provides all new taxa to the Encyclopedia of Life on the day of publication. See also * ''Zootaxa ''Zootaxa'' is a peer-reviewed scientific mega journal for animal taxonomists. It is published by Magnolia Press (Auckland, New Zealand). The journal was established by Zhi-Qiang Zhang in 2001 and new issues are published multiple times a week. ...'' References External links * * * Creative Commons Attribution-licensed journals English-language journals Open access journals Publications established in 2008 Zoology journals Pensoft Publishers academic journals Continuous journals {{zoo-journal-stub ...
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Pensoft Publishers
Pensoft Publishers (also known as: Pensoft) are a publisher of scientific literature based in Sofia, Bulgaria. Pensoft was founded in 1992, by two academics: Lyubomir Penev and Sergei Golovatch. It has published over 1000 academic and professional books and currently publishes over 60 peer-reviewed open access scientific journals including ''ZooKeys'', ''PhytoKeys'', ''Check List'', ''Comparative Cytogenetics'', ''Journal of Hymenoptera Research'', ''Deutsche Entomologische Zeitschrift,'' and ''Zoosystematics and Evolution''. Pensoft is part of the open-access publishing movement. The Creative Commons Attribution License ( CC-BY) is used for all journal articles. In 2012, Pensoft established a partnership with Encyclopedia of Life called the EOL Open Access Support Project (EOASP) to financially support independent taxonomists, and taxonomists living in developing countries to publish their results in Pensoft journals. Pensoft were notably one of the first publishers to facilit ...
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ...
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Journal Article Tag Suite
The Journal Article Tag Suite (JATS) is an XML format used to describe scientific literature published online. It is a technical standard developed by the National Information Standards Organization (NISO) and approved by the American National Standards Institute with the code Z39.96-2012. The NISO project was a continuation of the work done by NLM/NCBI, and popularized by the NLM's PubMed Central as a ''de facto'' standard for archiving and interchange of scientific open-access journals and its contents with XML. With the NISO standardization the NLM initiative has gained a wider reach, and several other repositories, such as SciELO and Redalyc, adopted the XML formatting for scientific articles. The JATS provides a set of XML elements and attributes for describing the textual and graphical content of journal articles as well as some non-article material such as letters, editorials, and book and product reviews. JATS allows for descriptions of the full article content or ju ...
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Taxonomy (biology)
In biology, taxonomy () is the scientific study of naming, defining ( circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxa (singular: taxon) and these groups are given a taxonomic rank; groups of a given rank can be aggregated to form a more inclusive group of higher rank, thus creating a taxonomic hierarchy. The principal ranks in modern use are domain, kingdom, phylum (''division'' is sometimes used in botany in place of ''phylum''), class, order, family, genus, and species. The Swedish botanist Carl Linnaeus is regarded as the founder of the current system of taxonomy, as he developed a ranked system known as Linnaean taxonomy for categorizing organisms and binomial nomenclature for naming organisms. With advances in the theory, data and analytical technology of biological systematics, the Linnaean system has transformed into a system of modern biological classification intended to reflect the evolu ...
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Copyright
A copyright is a type of intellectual property that gives its owner the exclusive right to copy, distribute, adapt, display, and perform a creative work, usually for a limited time. The creative work may be in a literary, artistic, educational, or musical form. Copyright is intended to protect the original expression of an idea in the form of a creative work, but not the idea itself. A copyright is subject to limitations based on public interest considerations, such as the fair use doctrine in the United States. Some jurisdictions require "fixing" copyrighted works in a tangible form. It is often shared among multiple authors, each of whom holds a set of rights to use or license the work, and who are commonly referred to as rights holders. These rights frequently include reproduction, control over derivative works, distribution, public performance, and moral rights such as attribution. Copyrights can be granted by public law and are in that case considered "territorial righ ...
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Scientific Literature
: ''For a broader class of literature, see Academic publishing.'' Scientific literature comprises scholarly publications that report original empirical and theoretical work in the natural and social sciences. Within an academic field, scientific literature is often referred to as the literature. Academic publishing is the process of contributing the results of one's research into the literature, which often requires a peer-review process. Original scientific research published for the first time in scientific journals is called the primary literature. Patents and technical reports, for minor research results and engineering and design work (including computer software), can also be considered primary literature. Secondary sources include review articles (which summarize the findings of published studies to highlight advances and new lines of research) and books (for large projects or broad arguments, including compilations of articles). Tertiary sources might include encyc ...
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