Taxonomic Database
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Taxonomic Database
A taxonomic database is a database created to hold information on biological taxa – for example groups of organisms organized by species name or other taxonomic identifier – for efficient data management and information retrieval. Taxonomic databases are routinely used for the automated construction of biological checklists such as floras and faunas, both for print publication and online; to underpin the operation of web-based species information systems; as a part of biological collection management (for example in museums and herbaria); as well as providing, in some cases, the taxon management component of broader science or biology information systems. They are also a fundamental contribution to the discipline of biodiversity informatics. Goal The goal of a taxonomic database is (or should be) to accurately model the characteristics of interest that are relevant to the organisms which are in scope for the intended coverage and usage of the system. For example, databases o ...
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Database
In computing, a database is an organized collection of data stored and accessed electronically. Small databases can be stored on a file system, while large databases are hosted on computer clusters or cloud storage. The design of databases spans formal techniques and practical considerations, including data modeling, efficient data representation and storage, query languages, security and privacy of sensitive data, and distributed computing issues, including supporting concurrent access and fault tolerance. A database management system (DBMS) is the software that interacts with end users, applications, and the database itself to capture and analyze the data. The DBMS software additionally encompasses the core facilities provided to administer the database. The sum total of the database, the DBMS and the associated applications can be referred to as a database system. Often the term "database" is also used loosely to refer to any of the DBMS, the database system or an app ...
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International Code Of Zoological Nomenclature
The International Code of Zoological Nomenclature (ICZN) is a widely accepted convention in zoology that rules the formal scientific naming of organisms treated as animals. It is also informally known as the ICZN Code, for its publisher, the International Commission on Zoological Nomenclature (which shares the acronym "ICZN"). The rules principally regulate: * How names are correctly established in the frame of binominal nomenclature * Which name must be used in case of name conflicts * How scientific literature must cite names Zoological nomenclature is independent of other systems of nomenclature, for example botanical nomenclature. This implies that animals can have the same generic names as plants (e.g. there is a genus '' Abronia'' in both animals and plants). The rules and recommendations have one fundamental aim: to provide the maximum universality and continuity in the naming of all animals, except where taxonomic judgment dictates otherwise. The code is meant to g ...
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Catalogues
Catalog or catalogue may refer to: *Cataloging **'emmy on the 'og **in science and technology *** Library catalog, a catalog of books and other media ****Union catalog, a combined library catalog describing the collections of a number of libraries *** Calendar (archive) and Finding aid, catalogs of an archive ***Astronomical catalog, a catalog of astronomical objects ****Star catalog, a catalog of stars ***Pharmacopoeia, a book containing directions for the preparation of compound medicines ***Database catalog, in computer science **in arts ***Collection catalog, a catalog of a museum ***Exhibition catalogue, a catalogue of art ***''Catalogue raisonné'', a list of artworks ***Music catalog, a catalog of musical compositions ***Font catalog, a catalog of typefaces containing specimen with example use of fonts **in sales ***Mail order catalog ***Parts book, a book published by a manufacturer, containing the part numbers of their products *** Trade literature, printed materials pub ...
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Biodiversity Databases
Biodiversity or biological diversity is the variety and variability of life on Earth. Biodiversity is a measure of variation at the genetic ('' genetic variability''), species (''species diversity''), and ecosystem ('' ecosystem diversity'') level. Biodiversity is not distributed evenly on Earth; it is usually greater in the tropics as a result of the warm climate and high primary productivity in the region near the equator. Tropical forest ecosystems cover less than 10% of earth's surface and contain about 90% of the world's species. Marine biodiversity is usually higher along coasts in the Western Pacific, where sea surface temperature is highest, and in the mid-latitudinal band in all oceans. There are latitudinal gradients in species diversity. Biodiversity generally tends to cluster in hotspots, and has been increasing through time, but will be likely to slow in the future as a primary result of deforestation. It encompasses the evolutionary, ecological, and cultural pro ...
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Pan-European Species Directories Infrastructure
The Pan-European Species-directories Infrastructure (PESI) provides a mechanism to deliver an integrated, annotated checklist of the species occurring in Europe, aiming to cover the Western Palearctic biogeographic region. PESI integrates the efforts of five community networks, Euro+Med PlantBase (E+M); Fauna Europaea Fauna Europaea is a database of the scientific names and distribution of all living multicellular Europe Europe is a large peninsula conventionally considered a continent in its own right because of its great physical size and the weight o ... (FaEu); the European Register of Marine Species (ERMS), and Species Fungorum Europe (SF-EU), into a single European checklist. The PESI checklist (also called EU-nomen) serves as a taxonomic standard and backbone for Europe. References External links A Pan-European Species-directories Infrastructure - PESI (web portal)
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Darwin Core
Darwin Core (often abbreviated to DwC) is an extension of Dublin Core for biodiversity informatics. It is meant to provide a stable standard reference for sharing information on biological diversity (biodiversity). The terms described in this standard are a part of a larger set of vocabularies and technical specifications under development and maintained by Biodiversity Information Standards (TDWG) (formerly the Taxonomic Databases Working Group). Description The Darwin Core is a body of standards intended to facilitate the sharing of information about biological diversity. The DwC includes a glossary of terms, and documentation providing reference definitions, examples, and commentary. An overview of the currently adopted terms and concepts can be found in thDarwin Core quick reference guidemaintained by TDWG. The DwC operational unit is primarily based on taxa, their occurrence in nature as documented by observations, specimens, and samples, and related information. Included in ...
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List Of Biodiversity Databases
This is a list of biodiversity databases. Biodiversity databases store taxonomic information alone or more commonly also other information like distribution (spatial) data and ecological data, which provide information on the biodiversity of a particular area or group of living organisms. They may store specimen-level information, species-level information, information on nomenclature, or any combination of the above. Most are available online. Specimen-focused databases contain data about individual specimens, as represented by vouchered museum specimens, collections of specimen photographs, data on field-based specimen observations and morphological or genetic data. Species-focused databases contain information summarised at the species-level. Some species-focused databases attempt to compile comprehensive data about particular species (FishBase), while others focus on particular species attributes, such as checklists of species in a given area (FEOW) or the conservation status o ...
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Biodiversity Information Standards (TDWG)
Biodiversity Information Standards (TDWG), originally called the Taxonomic Databases Working Group, is a non-profit scientific and educational association that works to develop open standards for the exchange of biodiversity data, facilitating biodiversity informatics. It is affiliated with the International Union of Biological Sciences. It is best known for the Darwin Core standard for exchanging biodiversity, which has been used by the Global Biodiversity Information Facility to collect millions of biological observations from museums and other organizations from around the world. History TDWG was founded in 1985 as the Taxonomic Databases Working Group; the first meeting took place on September 28–30, 1985, at the Conservatory and Botanical Garden of the City of Geneva in Switzerland. The organisation was formed as an international collaboration to promote the wider and more effective dissemination of information about biological organisms. Its name was changed to Taxonomic Da ...
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Synonym (taxonomy)
The Botanical and Zoological Codes of nomenclature treat the concept of synonymy differently. * In botanical nomenclature, a synonym is a scientific name that applies to a taxon that (now) goes by a different scientific name. For example, Linnaeus was the first to give a scientific name (under the currently used system of scientific nomenclature) to the Norway spruce, which he called ''Pinus abies''. This name is no longer in use, so it is now a synonym of the current scientific name, '' Picea abies''. * In zoology, moving a species from one genus to another results in a different binomen, but the name is considered an alternative combination rather than a synonym. The concept of synonymy in zoology is reserved for two names at the same rank that refers to a taxon at that rank - for example, the name ''Papilio prorsa'' Linnaeus, 1758 is a junior synonym of ''Papilio levana'' Linnaeus, 1758, being names for different seasonal forms of the species now referred to as ''Araschnia ...
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Homonym (biology)
In biology, a homonym is a name for a taxon that is identical in spelling to another such name, that belongs to a different taxon. The rule in the International Code of Zoological Nomenclature is that the first such name to be published is the senior homonym and is to be used (it is " valid"); any others are junior homonyms and must be replaced with new names. It is, however, possible that if a senior homonym is archaic, and not in "prevailing usage," it may be declared a '' nomen oblitum'' and rendered unavailable, while the junior homonym is preserved as a '' nomen protectum''. :For example: :*Cuvier proposed the genus ''Echidna'' in 1797 for the spiny anteater. :*However, Forster had already published the name ''Echidna'' in 1777 for a genus of moray eels. :*Forster's use thus has priority, with Cuvier's being a junior homonym. :* Illiger published the replacement name ''Tachyglossus'' in 1811. Similarly, the International Code of Nomenclature for algae, fungi, and plant ...
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Fauna Europaea
Fauna Europaea is a database of the scientific names and distribution of all living multicellular Europe Europe is a large peninsula conventionally considered a continent in its own right because of its great physical size and the weight of its history and traditions. Europe is also considered a subcontinent of Eurasia and it is located entirel ...an land and fresh-water animals. It serves as a standard taxonomic source for animal taxonomy within the Pan-European Species directories Infrastructure (PESI). , Fauna Europaea reported that their database contained 235,708 taxon names and 173,654 species names. Its construction was initially funded by the European Council (2000–2004). The project was co-ordinated by the University of Amsterdam which launched the first version in 2004, after which the database was transferred to the Natural History Museum Berlin in 2015. References External links Fauna Europaea
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Catalogue Of Life
The Catalogue of Life is an online database that provides an index of known species of animals, plants, fungi, and microorganisms. It was created in 2001 as a partnership between the global Species 2000 and the American Integrated Taxonomic Information System. The Catalogue is used by research scientists, citizen scientists, educators, and policy makers. The Catalogue is also used by the Biodiversity Heritage Library, the Barcode of Life Data System, Encyclopedia of Life, and the Global Biodiversity Information Facility. The Catalogue currently compiles data fro165 peer-reviewed taxonomic databasesthat are maintained by specialist institutions around the world. , the COL Checklist lists 2,067,951 of the world's 2.2m extant species known to taxonomists on the planet at present time. Structure The Catalogue of Life employs a simple data structure to provide information on synonymy, grouping within a taxonomic hierarchy, common names, distribution and ecological environment. It ...
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