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RNA Timestamp
An RNA timestamp is a technology that enables the age of any given RNA transcript to be inferred by exploiting RNA editing. In this technique, the RNA of interest is tagged to an adenosine rich reporter motif that consists of multiple MS2 binding sites. These MS2 binding sites recruit a complex composed of ADAR2 (adenosine deaminase acting on RNA catalytic 2 domain) and MCP (MS2 capsid protein). The binding of the ADAR2 enzyme to the RNA timestamp initiates the gradual conversion of adenosine to inosine molecules. Over time, these edits accumulate and are then read through RNA-seq. This technology allows us to glean cell-type specific temporal information associated with RNA-seq data, that until now, has not been accessible. Background The advent of RNA-sequencing (RNA-seq) in 2009 allowed for a deeper look into the biology of unique cell types by allowing researchers to examine the presence and quantity of RNA in a sample at any given time. The ability for analysis of the tr ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
RNA Editing
RNA editing (also RNA modification) is a molecular process through which some cells can make discrete changes to specific nucleotide sequences within an RNA molecule after it has been generated by RNA polymerase. It occurs in all living organisms and is one of the most evolutionarily conserved properties of RNAs. RNA editing may include the insertion, deletion, and base substitution of nucleotides within the RNA molecule. RNA editing is relatively rare, with common forms of RNA processing (e.g. RNA splicing, splicing, 5'-capping enzyme, capping, and 3'-polyadenylation) not usually considered as editing. It can affect the activity, localization as well as stability of RNAs, and has been linked with human diseases. RNA editing has been observed in some tRNA, rRNA, mRNA, or microRNA, miRNA molecules of eukaryotes and their viruses, archaea, and prokaryotes. RNA editing occurs in the cell nucleus, as well as within mitochondria and plastids. In vertebrates, editing is rare and usually ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
