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Plant Identification
In biology, determination is the process of matching a specimen of an organism to a known taxon, for example identifying a plant. The term is also used in cellular biology, where it means the act of the differentiation of stem cells becoming fixed. Various methods are used, for example single or multi-access identification keys. Overview The need to identify which plant is which has existed for time immemorial. The ability depends to a large extent on what criteria and whose system is used. Determination now relies on modern taxonomy to define the identify of organisms. Taxonomy is the branch of biology which deals with identity, nomenclature and classification. The term was first coined in 1813 by Swiss botanist Augustin Pyramus de Candolle. Carl Linnaeus, who began modern taxonomy, used the term 'systematics' himself. Determination then requires comparisons of certain characteristics and then assigning a particular specimen to a known taxonomic group, hopefully ultimately ...
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Taxon
In biology, a taxon (back-formation from ''taxonomy''; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and given a particular ranking, especially if and when it is accepted or becomes established. It is very common, however, for taxonomists to remain at odds over what belongs to a taxon and the criteria used for inclusion. If a taxon is given a formal scientific name, its use is then governed by one of the nomenclature codes specifying which scientific name is correct for a particular grouping. Initial attempts at classifying and ordering organisms (plants and animals) were set forth in Carl Linnaeus's Linnaean taxonomy, system in ''Systema Naturae'', 10th edition (1758), as well as an unpublished work by Bernard de Jussieu, Bernard and Antoine Laurent de Jussieu. The idea of a unit-based system of biological classification was first mad ...
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Species Description
A species description is a formal description of a newly discovered species, usually in the form of a scientific paper. Its purpose is to give a clear description of a new species of organism and explain how it differs from species that have been described previously or are related. In order for species to be validly described, they need to follow guidelines established over time. Zoological naming requires adherence to the ICZN code, plants, the ICN, viruses ICTV, and so on. The species description often contains photographs or other illustrations of type material along with a note on where they are deposited. The publication in which the species is described gives the new species a formal scientific name. Some 1.9 million species have been identified and described, out of some 8.7 million that may actually exist. Millions more have become extinct throughout the existence of life on Earth. Naming process A name of a new species becomes valid (available in zo ...
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Alpha Taxonomy
In biology, taxonomy () is the science, scientific study of naming, defining (Circumscription (taxonomy), circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxon, taxa (singular: taxon) and these groups are given a taxonomic rank; groups of a given rank can be aggregated to form a more inclusive group of higher rank, thus creating a taxonomic hierarchy. The principal ranks in modern use are domain (biology), domain, kingdom (biology), kingdom, phylum (''division'' is sometimes used in botany in place of ''phylum''), class (biology), class, order (biology), order, family (biology), family, genus, and species. The Swedish botanist Carl Linnaeus is regarded as the founder of the current system of taxonomy, as he developed a ranked system known as Linnaean taxonomy for categorizing organisms and binomial nomenclature for naming organisms. With advances in the theory, data and analytical technology of biologica ...
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Pl@ntNet
Pl@ntNet is a citizen science project for automatic plant identification through photographs and based on machine learning. History This project launched in 2009 has been developed by scientists ( computer engineers and botanists) from a consortium gathering French research institutes (Institut de recherche pour le développement (IRD), Centre de coopération internationale en recherche agronomique pour le développement (CIRAD), Institut national de la recherche agronomique (INRA), Institut national de recherche en informatique et en automatique The National Institute for Research in Digital Science and Technology (Inria) () is a French national research institution focusing on computer science and applied mathematics. It was created under the name ''Institut de recherche en informatiq ... (INRIA) and the network Tela Botanica, with the support of Agropolis Fondation ). Platforms An app for smartphones (and a web version) was launched in 2013, which allows to i ...
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INaturalist
iNaturalist is a social network of naturalists, citizen scientists, and biologists built on the concept of mapping and sharing observations of biodiversity across the globe. iNaturalist may be accessed via its website or from its mobile applications. , iNaturalist users had contributed approximately 115,651,000 observations of plants, animals, fungi, and other organisms worldwide, and around 245,700 users were active in the previous 30 days. iNaturalist describes itself as "an online social network of people sharing biodiversity information to help each other learn about nature", with its primary goal being to connect people to nature. Although it is not a science project itself, iNaturalist is a ''platform'' for science and conservation efforts, providing valuable open data to research projects, land managers, other organizations, and the public. It is the primary application for crowd-sourced biodiversity data in places such as Mexico, southern Africa, and Australia, and the ...
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Automated Species Identification
Automated species identification is a method of making the expertise of Taxonomy (biology), taxonomists available to ecologists, parataxonomy, parataxonomists and others via digital technology and artificial intelligence. Today, most automated identification systems rely on images depicting the species for the identification. Based on precisely identified images of a species, a Classifier system, classifier is trained. Once exposed to a sufficient amount of training data, this classifier can then identify the trained species on previously unseen images. Introduction The automated identification of biological objects such as insects (individuals) and/or groups (e.g., species, guilds, characters) has been a dream among systematics, systematists for centuries. The goal of some of the first multivariate statistics, multivariate biometric methods was to address the perennial problem of group discrimination and inter-group characterization. Despite much preliminary work in the 1950s an ...
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Herbaria
A herbarium (plural: herbaria) is a collection of preserved plant specimens and associated data used for scientific study. The specimens may be whole plants or plant parts; these will usually be in dried form mounted on a sheet of paper (called '' exsiccatum'', plur. ''exsiccata'') but, depending upon the material, may also be stored in boxes or kept in alcohol or other preservative. The specimens in a herbarium are often used as reference material in describing plant taxa; some specimens may be types. The same term is often used in mycology to describe an equivalent collection of preserved fungi, otherwise known as a fungarium. A xylarium is a herbarium specialising in specimens of wood. The term hortorium (as in the Liberty Hyde Bailey Hortorium) has occasionally been applied to a herbarium specialising in preserving material of horticultural origin. History The making of herbaria is an ancient phenomenon, at least six centuries old, although the techniques have change ...
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Palynology
Palynology is the "study of dust" (from grc-gre, παλύνω, palynō, "strew, sprinkle" and '' -logy'') or of "particles that are strewn". A classic palynologist analyses particulate samples collected from the air, from water, or from deposits including sediments of any age. The condition and identification of those particles, organic and inorganic, give the palynologist clues to the life, environment, and energetic conditions that produced them. The term is commonly used to refer to a subset of the discipline, which is defined as "the study of microscopic objects of macromolecular organic composition (i.e., compounds of carbon, hydrogen, nitrogen and oxygen), not capable of dissolution in hydrochloric or hydrofluoric acids". It is the science that studies contemporary and fossil palynomorphs (paleopalynology), including pollen, spores, orbicules, dinocysts, acritarchs, chitinozoans and scolecodonts, together with particulate organic matter (POM) and kerogen found in sedimen ...
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Pollen
Pollen is a powdery substance produced by seed plants. It consists of pollen grains (highly reduced microgametophytes), which produce male gametes (sperm cells). Pollen grains have a hard coat made of sporopollenin that protects the gametophytes during the process of their movement from the stamens to the pistil of flowering plants, or from the male cone to the female cone of gymnosperms. If pollen lands on a compatible pistil or female cone, it germinates, producing a pollen tube that transfers the sperm to the ovule containing the female gametophyte. Individual pollen grains are small enough to require magnification to see detail. The study of pollen is called palynology and is highly useful in paleoecology, paleontology, archaeology, and forensics. Pollen in plants is used for transferring haploid male genetic material from the anther of a single flower to the stigma of another in cross-pollination. In a case of self-pollination, this process takes place from the anth ...
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Paleontologist
Paleontology (), also spelled palaeontology or palæontology, is the scientific study of life that existed prior to, and sometimes including, the start of the Holocene epoch (roughly 11,700 years before present). It includes the study of fossils to classify organisms and study their interactions with each other and their environments (their paleoecology). Paleontological observations have been documented as far back as the 5th century BC. The science became established in the 18th century as a result of Georges Cuvier's work on comparative anatomy, and developed rapidly in the 19th century. The term itself originates from Greek (, "old, ancient"), (, ( gen. ), "being, creature"), and (, "speech, thought, study"). Paleontology lies on the border between biology and geology, but differs from archaeology in that it excludes the study of anatomically modern humans. It now uses techniques drawn from a wide range of sciences, including biochemistry, mathematics, and engineering. ...
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Base-pair
A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA and RNA. Dictated by specific hydrogen bonding patterns, "Watson–Crick" (or "Watson–Crick–Franklin") base pairs (guanine–cytosine and adenine–thymine) allow the DNA helix to maintain a regular helical structure that is subtly dependent on its nucleotide sequence. The Complementarity (molecular biology), complementary nature of this based-paired structure provides a redundant copy of the genetic information encoded within each strand of DNA. The regular structure and data redundancy provided by the DNA double helix make DNA well suited to the storage of genetic information, while base-pairing between DNA and incoming nucleotides provides the mechanism through which DNA polymerase replicates DNA and RNA polymerase transcribes DNA in ...
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Genome
In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as regulatory sequences (see non-coding DNA), and often a substantial fraction of 'junk' DNA with no evident function. Almost all eukaryotes have mitochondria and a small mitochondrial genome. Algae and plants also contain chloroplasts with a chloroplast genome. The study of the genome is called genomics. The genomes of many organisms have been sequenced and various regions have been annotated. The International Human Genome Project reported the sequence of the genome for ''Homo sapiens'' in 200The Human Genome Project although the initial "finished" sequence was missing 8% of the genome consisting mostly of repetitive sequences. With advancements in technology that could handle sequenci ...
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