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In biology, determination is the process of matching a specimen of an organism to a known
taxon In biology, a taxon (back-formation from ''taxonomy''; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular nam ...
, for example identifying a plant. The term is also used in
cellular biology Cell biology (also cellular biology or cytology) is a branch of biology that studies the structure, function, and behavior of cells. All living organisms are made of cells. A cell is the basic unit of life that is responsible for the living and ...
, where it means the act of the differentiation of
stem cell In multicellular organisms, stem cells are undifferentiated or partially differentiated cells that can differentiate into various types of cells and proliferate indefinitely to produce more of the same stem cell. They are the earliest type o ...
s becoming fixed. Various methods are used, for example
single Single may refer to: Arts, entertainment, and media * Single (music), a song release Songs * "Single" (Natasha Bedingfield song), 2004 * "Single" (New Kids on the Block and Ne-Yo song), 2008 * "Single" (William Wei song), 2016 * "Single", by ...
or multi-access
identification key In biology, an identification key, taxonomic key, or biological key is a printed or computer-aided device that aids the identification of biological entities, such as plants, animals, fossils, microorganisms, and pollen grains. Identification k ...
s.


Overview

The need to identify which plant is which has existed for time immemorial. The ability depends to a large extent on what criteria and whose system is used. Determination now relies on modern
taxonomy Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ...
to define the identify of organisms. Taxonomy is the branch of biology which deals with identity, nomenclature and classification. The term was first coined in 1813 by Swiss botanist
Augustin Pyramus de Candolle Augustin Pyramus (or Pyrame) de Candolle (, , ; 4 February 17789 September 1841) was a Swiss botanist. René Louiche Desfontaines launched de Candolle's botanical career by recommending him at a herbarium. Within a couple of years de Candol ...
.
Carl Linnaeus Carl Linnaeus (; 23 May 1707 – 10 January 1778), also known after his ennoblement in 1761 as Carl von Linné Blunt (2004), p. 171. (), was a Swedish botanist, zoologist, taxonomist, and physician who formalised binomial nomenclature, the ...
, who began modern taxonomy, used the term 'systematics' himself. Determination then requires comparisons of certain characteristics and then assigning a particular specimen to a known taxonomic group, hopefully ultimately arriving at a species or
infraspecific name In botany, an infraspecific name is the scientific name for any taxon below the rank of species, i.e. an infraspecific taxon or infraspecies. (A "taxon", plural "taxa", is a group of organisms to be given a particular name.) The scientific names ...
. The characteristics used are usually morphological, such as colours, numbers, shapes and sizes of particular organs. Where possible, this is traditionally done using
dichotomous key In phylogenetics, a single-access key (also called dichotomous key, sequential key, analytical key, or pathway key) is an identification key where the sequence and structure of identification steps is fixed by the author of the key. At each point i ...
s. Keys are traditionally found in such works such as
floras Flora is all the plant life present in a particular region or time, generally the naturally occurring (indigenous) native plants. Sometimes bacteria and fungi are also referred to as flora, as in the terms '' gut flora'' or '' skin flora''. E ...
,
field guide A field guide is a book designed to help the reader identify wildlife (flora or fauna) or other objects of natural occurrence (e.g. rocks and minerals). It is generally designed to be brought into the "field" or local area where such objects exi ...
s or
monograph A monograph is a specialist work of writing (in contrast to reference works) or exhibition on a single subject or an aspect of a subject, often by a single author or artist, and usually on a scholarly subject. In library cataloging, ''monograph ...
s. Botanical or entomological keys have been coded as computer programs. Applications are even available now which use artificial intelligence to identify plants on the basis of photographs. There are not always keys available for certain regions or plant groups, and the person determining the specimen will then have to rely on characteristics in the
species description A species description is a formal description of a newly discovered species, usually in the form of a scientific paper. Its purpose is to give a clear description of a new species of organism and explain how it differs from species that have be ...
or discovered through comparison of multiple specimens with the type. Using
DNA barcoding DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by comparison with a reference library of such DNA sections (also called "sequences"), an indiv ...
is a modern method that does not require the determiner to be highly trained. Another similar method uses the
alkaloid Alkaloids are a class of basic, naturally occurring organic compounds that contain at least one nitrogen atom. This group also includes some related compounds with neutral and even weakly acidic properties. Some synthetic compounds of similar ...
profiles of specimens to determine the species. The total weight or length of the
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ge ...
as measured in
base-pair A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA ...
s can be used to identify species.
Paleontologist Paleontology (), also spelled palaeontology or palæontology, is the scientific study of life that existed prior to, and sometimes including, the start of the Holocene epoch (roughly 11,700 years before present). It includes the study of fossi ...
s must be able to identify their specimens based only on the shapes and sizes of fossilised bones. In forestry, especially in the tropics, identifying trees based on the flowers or leaves high up in the crown can be difficult, a method of identifying tree species in this case is called a 'slash', a shallow machete cut to the trunk to expose the colours of the different layers inside, and show the type of sap. The science of identifying plant species using their
pollen Pollen is a powdery substance produced by seed plants. It consists of pollen grains (highly reduced microgametophytes), which produce male gametes (sperm cells). Pollen grains have a hard coat made of sporopollenin that protects the gametophyt ...
is called
palynology Palynology is the "study of dust" (from grc-gre, παλύνω, palynō, "strew, sprinkle" and '' -logy'') or of "particles that are strewn". A classic palynologist analyses particulate samples collected from the air, from water, or from deposit ...
. Geography can also sometimes help in narrowing down the identity of a specimen. Sometimes the determiner will be unable to identify a specimen clearly, and use such additions as ''
cf. The abbreviation ''cf.'' (short for the la, confer/conferatur, both meaning "compare") is used in writing to refer the reader to other material to make a comparison with the topic being discussed. Style guides recommend that ''cf.'' be used onl ...
'' or '' aff.'' to convey this. Reference collections of identified plant specimens are collected into
herbaria A herbarium (plural: herbaria) is a collection of preserved plant specimens and associated data used for scientific study. The specimens may be whole plants or plant parts; these will usually be in dried form mounted on a sheet of paper (called ...
. Most plant parts are dried, pressed, mounted on herbarium sheets and stored; succulents and some other types of plants are normally kept in alcohol solution. The sheets are standard size of 16 × 11 inches or 41.25 × 28.75 cm. The identified plant ideally includes all parts including roots, flowers and fruits, strobili, etc. Especially the flowers are important when trying to identify a specimen.
Automated species identification Automated species identification is a method of making the expertise of Taxonomy (biology), taxonomists available to ecologists, parataxonomy, parataxonomists and others via digital technology and artificial intelligence. Today, most automated ide ...
uses artificial intelligence to identify species based on the images of the species. Projects like
iNaturalist iNaturalist is a social network of naturalists, citizen scientists, and biologists built on the concept of mapping and sharing observations of biodiversity across the globe. iNaturalist may be accessed via its website or from its mobile applic ...
and
Pl@ntNet Pl@ntNet is a citizen science project for automatic plant identification through photographs and based on machine learning. History This project launched in 2009 has been developed by scientists ( computer engineers and botanists) from a co ...
relies on crowdsourced data and assists identification through automatic as well as community input.


See also

*
Alpha taxonomy In biology, taxonomy () is the science, scientific study of naming, defining (Circumscription (taxonomy), circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxon, taxa (s ...
*
Field guide A field guide is a book designed to help the reader identify wildlife (flora or fauna) or other objects of natural occurrence (e.g. rocks and minerals). It is generally designed to be brought into the "field" or local area where such objects exi ...
*
Plant morphology Phytomorphology is the study of the morphology (biology), physical form and external structure of plants.Raven, P. H., R. F. Evert, & S. E. Eichhorn. ''Biology of Plants'', 7th ed., page 9. (New York: W. H. Freeman, 2005). . This is usually cons ...
*
Pollen DNA barcoding Pollen DNA barcoding is the process of identifying pollen donor plant species through the amplification and sequencing of specific, conserved regions of plant DNA. Being able to accurately identify pollen has a wide range of applications though ...


References

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Further reading

*Tim Jones' (2013) - "A visual identification key utilizing both gestalt and analytic approaches to identification of Carices present in North America (Plantae, Cyperaceae)" in the ''Biodiversity Data Journal'

*John Shaffner's key (1911) in the ''Ohio Naturalist'


External links


Shoot (over 19,000 plants listed)Visual Interactive Kingdom Plantae to division (Louisiana State University)Interactive Plant Identifier (University of Wisconsin)Interactive Plant Identifier (Auburn University)Image-based plant identification system (French Flora, Pl@ntNet project)Plants for identification on iNaturalistAnimals for identification on iNaturalistFungi for identification on iNaturalist
Botany