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PQ Tree
A PQ tree is a tree-based data structure that represents a family of permutations on a set of elements, discovered and named by Kellogg S. Booth and George S. Lueker in 1976. It is a rooted, labeled tree, in which each element is represented by one of the leaf nodes, and each non-leaf node is labelled P or Q. A P node has at least two children, and a Q node has at least three children. A PQ tree represents its permutations via permissible reorderings of the children of its nodes. The children of a P node may be reordered in any way. The children of a Q node may be put in reverse order, but may not otherwise be reordered. A PQ tree represents all leaf node orderings that can be achieved by any sequence of these two operations. A PQ tree with many P and Q nodes can represent complicated subsets of the set of all possible orderings. However, not every set of orderings may be representable in this way; for instance, if an ordering is represented by a PQ tree, the reverse of the ordering ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Structure
In computer science, a data structure is a data organization, management, and storage format that is usually chosen for efficient access to data. More precisely, a data structure is a collection of data values, the relationships among them, and the functions or operations that can be applied to the data, i.e., it is an algebraic structure about data. Usage Data structures serve as the basis for abstract data types (ADT). The ADT defines the logical form of the data type. The data structure implements the physical form of the data type. Different types of data structures are suited to different kinds of applications, and some are highly specialized to specific tasks. For example, relational databases commonly use B-tree indexes for data retrieval, while compiler implementations usually use hash tables to look up identifiers. Data structures provide a means to manage large amounts of data efficiently for uses such as large databases and internet indexing services. Usually, ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Journal Of Computer And System Sciences
The ''Journal of Computer and System Sciences'' (JCSS) is a peer-reviewed scientific journal in the field of computer science. ''JCSS'' is published by Elsevier, and it was started in 1967. Many influential scientific articles have been published in ''JCSS''; these include five papers that have won the Gödel Prize. an 2014 Gödel Prize Its managing editor is |
Series-parallel Partial Order
In order theory, order-theoretic mathematics, a series-parallel partial order is a partially ordered set built up from smaller series-parallel partial orders by two simple composition operations... The series-parallel partial orders may be characterized as the N-free finite partial orders; they have order dimension at most two.. They include weak orders and the reachability relationship in Tree (graph theory), directed trees and directed series–parallel graphs. The comparability graphs of series-parallel partial orders are cographs. Series-parallel partial orders have been applied in job shop scheduling, machine learning of event sequencing in time series data, transmission sequencing of multimedia data, and throughput maximization in dataflow programming. Series-parallel partial orders have also been called multitrees;. however, that name is ambiguous: multitrees also refer to partial orders with no four-element diamond suborder and to other structures formed from multiple tree ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Planarity Testing
In graph theory, the planarity testing problem is the algorithmic problem of testing whether a given graph is a planar graph (that is, whether it can be drawn in the plane without edge intersections). This is a well-studied problem in computer science for which many practical algorithms have emerged, many taking advantage of novel data structures. Most of these methods operate in O(''n'') time (linear time), where ''n'' is the number of edges (or vertices) in the graph, which is asymptotically optimal. Rather than just being a single Boolean value, the output of a planarity testing algorithm may be a planar graph embedding, if the graph is planar, or an obstacle to planarity such as a Kuratowski subgraph if it is not. Planarity criteria Planarity testing algorithms typically take advantage of theorems in graph theory that characterize the set of planar graphs in terms that are independent of graph drawings. These include *Kuratowski's theorem that a graph is planar if and only i ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Cyclic Order
In mathematics, a cyclic order is a way to arrange a set of objects in a circle. Unlike most structures in order theory, a cyclic order is not modeled as a binary relation, such as "". One does not say that east is "more clockwise" than west. Instead, a cyclic order is defined as a ternary relation , meaning "after , one reaches before ". For example, une, October, February but not une, February, October cf. picture. A ternary relation is called a cyclic order if it is cyclic, asymmetric, transitive, and connected. Dropping the "connected" requirement results in a partial cyclic order. A set with a cyclic order is called a cyclically ordered set or simply a cycle. Some familiar cycles are discrete, having only a finite number of elements: there are seven days of the week, four cardinal directions, twelve notes in the chromatic scale, and three plays in rock-paper-scissors. In a finite cycle, each element has a "next element" and a "previous element". There are also continu ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Planar Graph
In graph theory, a planar graph is a graph that can be embedded in the plane, i.e., it can be drawn on the plane in such a way that its edges intersect only at their endpoints. In other words, it can be drawn in such a way that no edges cross each other. Such a drawing is called a plane graph or planar embedding of the graph. A plane graph can be defined as a planar graph with a mapping from every node to a point on a plane, and from every edge to a plane curve on that plane, such that the extreme points of each curve are the points mapped from its end nodes, and all curves are disjoint except on their extreme points. Every graph that can be drawn on a plane can be drawn on the sphere as well, and vice versa, by means of stereographic projection. Plane graphs can be encoded by combinatorial maps or rotation systems. An equivalence class of topologically equivalent drawings on the sphere, usually with additional assumptions such as the absence of isthmuses, is called a pl ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Permutation
In mathematics, a permutation of a set is, loosely speaking, an arrangement of its members into a sequence or linear order, or if the set is already ordered, a rearrangement of its elements. The word "permutation" also refers to the act or process of changing the linear order of an ordered set. Permutations differ from combinations, which are selections of some members of a set regardless of order. For example, written as tuples, there are six permutations of the set , namely (1, 2, 3), (1, 3, 2), (2, 1, 3), (2, 3, 1), (3, 1, 2), and (3, 2, 1). These are all the possible orderings of this three-element set. Anagrams of words whose letters are different are also permutations: the letters are already ordered in the original word, and the anagram is a reordering of the letters. The study of permutations of finite sets is an important topic in the fields of combinatorics and group theory. Permutations are used in almost every branch of mathematics, and in many other fields of scie ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Interval Graph
In graph theory, an interval graph is an undirected graph formed from a set of intervals on the real line, with a vertex for each interval and an edge between vertices whose intervals intersect. It is the intersection graph of the intervals. Interval graphs are chordal graphs and perfect graphs. They can be recognized in linear time, and an optimal graph coloring or maximum clique in these graphs can be found in linear time. The interval graphs include all proper interval graphs, graphs defined in the same way from a set of unit intervals. These graphs have been used to model food webs, and to study scheduling problems in which one must select a subset of tasks to be performed at non-overlapping times. Other applications include assembling contiguous subsequences in DNA mapping, and temporal reasoning. Definition An interval graph is an undirected graph formed from a family of intervals :S_i,\quad i=0,1,2,\dots by creating one vertex for each interval , and connecting two ver ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Contig
A contig (from ''contiguous'') is a set of overlapping DNA segments that together represent a consensus region of DNA.Gregory, S. ''Contig Assembly''. Encyclopedia of Life Sciences, 2005. In bottom-up sequencing projects, a contig refers to overlapping sequence data ( reads); in top-down sequencing projects, contig refers to the overlapping clones that form a physical map of the genome that is used to guide sequencing and assembly.Dear, P. H. ''Genome Mapping''. Encyclopedia of Life Sciences, 2005. . Contigs can thus refer both to overlapping DNA sequences and to overlapping physical segments (fragments) contained in clones depending on the context. Original definition of contig In 1980, Staden wrote: ''In order to make it easier to talk about our data gained by the shotgun method of sequencing we have invented the word "contig". A contig is a set of gel readings that are related to one another by overlap of their sequences. All gel readings belong to one and only one con ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
