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MicroCT
X-ray microtomography, like tomography and X-ray computed tomography, uses X-rays to create cross-sections of a physical object that can be used to recreate a virtual model ( 3D model) without destroying the original object. The prefix ''micro-'' (symbol: µ) is used to indicate that the pixel sizes of the cross-sections are in the micrometre range. These pixel sizes have also resulted in the terms high-resolution X-ray tomography, micro–computed tomography (micro-CT or µCT), and similar terms. Sometimes the terms high-resolution CT (HRCT) and micro-CT are differentiated, but in other cases the term high-resolution micro-CT is used. Virtually all tomography today is computed tomography. Micro-CT has applications both in medical imaging and in industrial computed tomography. In general, there are two types of scanner setups. In one setup, the X-ray source and detector are typically stationary during the scan while the sample/animal rotates. The second setup, much more like a ...
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Volume Rendering
In scientific visualization and computer graphics, volume rendering is a set of techniques used to display a 2D projection of a 3D discretely sampled data set, typically a 3D scalar field. A typical 3D data set is a group of 2D slice images acquired by a CT, MRI, or MicroCT scanner. Usually these are acquired in a regular pattern (e.g., one slice for each millimeter of depth) and usually have a regular number of image pixels in a regular pattern. This is an example of a regular volumetric grid, with each volume element, or voxel represented by a single value that is obtained by sampling the immediate area surrounding the voxel. To render a 2D projection of the 3D data set, one first needs to define a camera in space relative to the volume. Also, one needs to define the opacity and color of every voxel. This is usually defined using an RGBA (for red, green, blue, alpha) transfer function that defines the RGBA value for every possible voxel value. For example, a volume ma ...
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Tomography
Tomography is imaging by sections or sectioning that uses any kind of penetrating wave. The method is used in radiology, archaeology, biology, atmospheric science, geophysics, oceanography, plasma physics, materials science, astrophysics, quantum information, and other areas of science. The word ''tomography'' is derived from Ancient Greek τόμος ''tomos'', "slice, section" and γράφω ''graphō'', "to write" or, in this context as well, "to describe." A device used in tomography is called a tomograph, while the image produced is a tomogram. In many cases, the production of these images is based on the mathematical procedure tomographic reconstruction, such as X-ray computed tomography technically being produced from multiple projectional radiographs. Many different reconstruction algorithms exist. Most algorithms fall into one of two categories: filtered back projection (FBP) and iterative reconstruction (IR). These procedures give inexact results: they represent a compr ...
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Cross Section (geometry)
In geometry and science, a cross section is the non-empty intersection of a solid body in three-dimensional space with a plane, or the analog in higher-dimensional spaces. Cutting an object into slices creates many parallel cross-sections. The boundary of a cross-section in three-dimensional space that is parallel to two of the axes, that is, parallel to the plane determined by these axes, is sometimes referred to as a contour line; for example, if a plane cuts through mountains of a raised-relief map parallel to the ground, the result is a contour line in two-dimensional space showing points on the surface of the mountains of equal elevation. In technical drawing a cross-section, being a projection of an object onto a plane that intersects it, is a common tool used to depict the internal arrangement of a 3-dimensional object in two dimensions. It is traditionally crosshatched with the style of crosshatching often indicating the types of materials being used. With computed ...
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Clay Tablet
In the Ancient Near East, clay tablets (Akkadian ) were used as a writing medium, especially for writing in cuneiform, throughout the Bronze Age and well into the Iron Age. Cuneiform characters were imprinted on a wet clay tablet with a stylus often made of reed (reed pen). Once written upon, many tablets were dried in the sun or air, remaining fragile. Later, these unfired clay tablets could be soaked in water and recycled into new clean tablets. Other tablets, once written, were either deliberately fired in hot kilns, or inadvertently fired when buildings were burnt down by accident or during conflict, making them hard and durable. Collections of these clay documents made up the first archives. They were at the root of the first libraries. Tens of thousands of written tablets, including many fragments, have been found in the Middle East. Surviving tablet-based documents from the Minoan/ Mycenaean civilizations, are mainly those which were used for accounting. Tablets servin ...
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Herculaneum Papyri
The Herculaneum papyri are more than 1,800 papyri found in the Herculaneum Villa of the Papyri, in the 18th century, carbonized by the eruption of Mount Vesuvius in AD 79. The papyri, containing a number of Greek philosophical texts, come from the only surviving library from antiquity that exists in its entirety.Interview with Daniel Delattre: the Herculaneum scrolls given to Consul Bonaparte (2010), Napoleon.org
As many as 44 of the works discovered were written by the philosopher and poet Philodemus
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En-Gedi Scroll
The En-Gedi Scroll is an ancient Hebrew parchment found in 1970 at Ein Gedi, Israel. Radiocarbon testing dates the scroll to the third or fourth century CE (210–390 CE), although paleographical considerations suggest that the scrolls may date back to the first or second century CE. This scroll was discovered to contain a portion of the biblical Book of Leviticus, making it the earliest copy of a Pentateuchal book ever found in a Holy Ark. The deciphered text fragment is identical to what was to become, during the Middle Ages, the standard text of the Hebrew Bible, known as the Masoretic Text, which it precedes by several centuries, and constitutes the earliest evidence of this authoritative text version. Damaged by a fire in approximately 600 CE, the scroll is badly charred and fragmented and required noninvasive scientific and computational techniques to virtually unwrap and read, which was completed in 2015 by a team led by Prof. Seales of the University of Kentucky. Discover ...
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Archaeology
Archaeology or archeology is the scientific study of human activity through the recovery and analysis of material culture. The archaeological record consists of artifacts, architecture, biofacts or ecofacts, sites, and cultural landscapes. Archaeology can be considered both a social science and a branch of the humanities. It is usually considered an independent academic discipline, but may also be classified as part of anthropology (in North America – the four-field approach), history or geography. Archaeologists study human prehistory and history, from the development of the first stone tools at Lomekwi in East Africa 3.3 million years ago up until recent decades. Archaeology is distinct from palaeontology, which is the study of fossil remains. Archaeology is particularly important for learning about prehistoric societies, for which, by definition, there are no written records. Prehistory includes over 99% of the human past, from the Paleolithic until the adven ...
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Segmentation (image Processing)
In digital image processing and computer vision, image segmentation is the process of partitioning a digital image into multiple image segments, also known as image regions or image objects ( sets of pixels). The goal of segmentation is to simplify and/or change the representation of an image into something that is more meaningful and easier to analyze. Linda G. Shapiro and George C. Stockman (2001): “Computer Vision”, pp 279–325, New Jersey, Prentice-Hall, Image segmentation is typically used to locate objects and boundaries (lines, curves, etc.) in images. More precisely, image segmentation is the process of assigning a label to every pixel in an image such that pixels with the same label share certain characteristics. The result of image segmentation is a set of segments that collectively cover the entire image, or a set of contours extracted from the image (see edge detection). Each of the pixels in a region are similar with respect to some characteristic or computed ...
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Tomviz
tomviz is an open source software platform for reproducible volumetric visualization and data processing. The platform is designed for a wide range scientific applications but is especially tailored to high-resolution electron tomography, with features that allow alignment and reconstruction of nanoscale materials. The tomviz platform allows graphical analysis of 3D datasets, but also comes packaged with Python, NumPy, and SciPy SciPy (pronounced "sigh pie") is a free and open-source Python library used for scientific computing and technical computing. SciPy contains modules for optimization, linear algebra, integration, interpolation, special functions, FFT, signal ... tools to allow advanced data processing and analysis. Current version is 1.10.0. In 2022 the tomviz platform was used to enable 3D visualization of specimens during an electron or cryo-electron tomography experiment. Tomviz is built with multi-threaded data analysis pipeline runs dynamic visualizations that ...
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Sara Bals
Sara Bals (born 1977) is a Belgian nanoscientist known for her research on electron tomography and its application in the study of nanomaterials such as perovskite nanocrystals. She is a professor of electron microscopy for materials science at the University of Antwerp. Education and career Bals was born 25 August 1977 in Antwerp. She was educated in physics at the University of Antwerp, earning a master's degree in 1999 and completing her Ph.D. there in 2003. Her dissertation was ''Optimisation of superconducting thin films and tapes by transmission electron microscopy''. After postdoctoral research in the National Center for Electron Microscopy at Lawrence Berkeley National Laboratory and at the University of Antwerp, she became an assistant professor at the University of Antwerp in 2007. She was promoted to associate professor in 2012 and full professor in 2018. Recognition Bals was elected to the Royal Flemish Academy of Belgium for Science and the Arts The Royal Fl ...
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Isotropy
Isotropy is uniformity in all orientations; it is derived . Precise definitions depend on the subject area. Exceptions, or inequalities, are frequently indicated by the prefix ' or ', hence ''anisotropy''. ''Anisotropy'' is also used to describe situations where properties vary systematically, dependent on direction. Isotropic radiation has the same intensity regardless of the direction of measurement, and an isotropic field exerts the same action regardless of how the test particle is oriented. Mathematics Within mathematics, ''isotropy'' has a few different meanings: ; Isotropic manifolds: A manifold is isotropic if the geometry on the manifold is the same regardless of direction. A similar concept is homogeneity. ; Isotropic quadratic form: A quadratic form ''q'' is said to be isotropic if there is a non-zero vector ''v'' such that ; such a ''v'' is an isotropic vector or null vector. In complex geometry, a line through the origin in the direction of an isotropic vector is a ...
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