Local Maximum Intensity Projection
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Local Maximum Intensity Projection
In scientific visualization, a local maximum intensity projection (LMIP, Local MIP) or Closest Vessel Projection (CVP) is a volume rendering method for 3D data, that is proposed as an improvement to the maximum intensity projection (MIP). Where the MIP projects the maximum intensity that falls in the way of parallel rays traced from the viewpoint, LMIP takes the first local maximum value, that is above a certain threshold. Local maximum intensity projection has been proposed as in visualization of data from computerized tomography and magnetic resonance imaging. It also can be used to extract a 3-dimensional vascular network from the data from a knife-edge scanning microscope The Knife-Edge Scanning Microscope (KESM) was invented and patented in the late 1990s by Bruce McCormick at Texas A&M University. The microscope is intended to produce high-resolution data sets in order to reconstruct 3D cellular structures. The ... at a significantly reduced computational demand (65% redu ...
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Scientific Visualization
Scientific visualization ( also spelled scientific visualisation) is an interdisciplinary branch of science concerned with the visualization of scientific phenomena.Michael Friendly (2008)"Milestones in the history of thematic cartography, statistical graphics, and data visualization" It is also considered a subset of computer graphics, a branch of computer science. The purpose of scientific visualization is to graphically illustrate scientific data to enable scientists to understand, illustrate, and glean insight from their data. Research into how people read and misread various types of visualizations is helping to determine what types and features of visualizations are most understandable and effective in conveying information. History One of the earliest examples of three-dimensional scientific visualisation was Maxwell's thermodynamic surface, sculpted in clay in 1874 by James Clerk Maxwell. This prefigured modern scientific visualization techniques that use computer graph ...
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Volume Rendering
In scientific visualization and computer graphics, volume rendering is a set of techniques used to display a 2D projection of a 3D discretely sampled data set, typically a 3D scalar field. A typical 3D data set is a group of 2D slice images acquired by a CT, MRI, or MicroCT scanner. Usually these are acquired in a regular pattern (e.g., one slice for each millimeter of depth) and usually have a regular number of image pixels in a regular pattern. This is an example of a regular volumetric grid, with each volume element, or voxel represented by a single value that is obtained by sampling the immediate area surrounding the voxel. To render a 2D projection of the 3D data set, one first needs to define a camera in space relative to the volume. Also, one needs to define the opacity and color of every voxel. This is usually defined using an RGBA (for red, green, blue, alpha) transfer function that defines the RGBA value for every possible voxel value. For example, a volume ma ...
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Maximum Intensity Projection
In scientific visualization, a maximum intensity projection (MIP) is a method for 3D data that projects in the visualization plane the voxels with maximum intensity that fall in the way of parallel rays traced from the viewpoint to the plane of projection. This implies that two MIP renderings from opposite viewpoints are symmetrical images if they are rendered using orthographic projection. MIP is used for the detection of lung nodules in lung cancer screening programs which use computed tomography scans. MIP enhances the 3D nature of these nodules, making them stand out from pulmonary bronchi and vasculature. MIP imaging is also used routinely by physicians in interpreting Positron Emission Tomography (PET) or Magnetic Resonance Angiography studies. Additional techniques This technique is computationally fast, but the 2D results do not provide a good sense of depth of the original data. To improve the sense of 3D, animations are usually rendered of several MIP frames in whi ...
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Computerized Tomography
A computed tomography scan (CT scan; formerly called computed axial tomography scan or CAT scan) is a medical imaging technique used to obtain detailed internal images of the body. The personnel that perform CT scans are called radiographers or radiology technologists. CT scanners use a rotating X-ray tube and a row of detectors placed in a gantry to measure X-ray attenuations by different tissues inside the body. The multiple X-ray measurements taken from different angles are then processed on a computer using tomographic reconstruction algorithms to produce tomographic (cross-sectional) images (virtual "slices") of a body. CT scans can be used in patients with metallic implants or pacemakers, for whom magnetic resonance imaging (MRI) is contraindicated. Since its development in the 1970s, CT scanning has proven to be a versatile imaging technique. While CT is most prominently used in medical diagnosis, it can also be used to form images of non-living objects. The 1979 Nob ...
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Magnetic Resonance Imaging
Magnetic resonance imaging (MRI) is a medical imaging technique used in radiology to form pictures of the anatomy and the physiological processes of the body. MRI scanners use strong magnetic fields, magnetic field gradients, and radio waves to generate images of the organs in the body. MRI does not involve X-rays or the use of ionizing radiation, which distinguishes it from CT and PET scans. MRI is a medical application of nuclear magnetic resonance (NMR) which can also be used for imaging in other NMR applications, such as NMR spectroscopy. MRI is widely used in hospitals and clinics for medical diagnosis, staging and follow-up of disease. Compared to CT, MRI provides better contrast in images of soft-tissues, e.g. in the brain or abdomen. However, it may be perceived as less comfortable by patients, due to the usually longer and louder measurements with the subject in a long, confining tube, though "Open" MRI designs mostly relieve this. Additionally, implants and oth ...
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Knife-edge Scanning Microscope
The Knife-Edge Scanning Microscope (KESM) was invented and patented in the late 1990s by Bruce McCormick at Texas A&M University. The microscope is intended to produce high-resolution data sets in order to reconstruct 3D cellular structures. The machine is capable of handling tissue volumes of 1 to 100mm3, recording large volumes of tissue in a small amount of time (~7mm2s−1). The resolution and scanning speed of KESM is a novel method for imaging tissue at resolutions sufficient to reconstruct maps of cellular distribution and morphology. The technique preserves the alignment of serial sections accurately enough to reconstruct neuron A neuron, neurone, or nerve cell is an electrically excitable cell that communicates with other cells via specialized connections called synapses. The neuron is the main component of nervous tissue in all animals except sponges and placozoa. N ...al processes and microvasculature.Knife-edge scanning microscope (KESM): http://research.cs.tamu.ed ...
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