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Jemris
Jemris is an open source MRI sequence design and simulation framework written in C++. It was designed to most generally and numerically integrate the Bloch equation in a single-core or parallel fashion for protons over a time course of a sequence on almost arbitrary samples with arbitrary excitation and acquisition setup. The integration is performed with thCVODEvariable time stepping solver. Jemris experiment setups are completely managed with XML files. It understands and parses symbolic mathematics In mathematics and computer science, computer algebra, also called symbolic computation or algebraic computation, is a scientific area that refers to the study and development of algorithms and software for manipulating mathematical expressions ... as dynamic parameters to allow for maximum flexibility. It has been used to operate a commercial MRI scanner. References * * * * * {{refend External links Official project website. SUNDIALS (SUite of Nonlinear and DIfferenti ...
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Magnetic Resonance Imaging
Magnetic resonance imaging (MRI) is a medical imaging technique used in radiology to form pictures of the anatomy and the physiological processes of the body. MRI scanners use strong magnetic fields, magnetic field gradients, and radio waves to generate images of the organs in the body. MRI does not involve X-rays or the use of ionizing radiation, which distinguishes it from CT and PET scans. MRI is a medical application of nuclear magnetic resonance (NMR) which can also be used for imaging in other NMR applications, such as NMR spectroscopy. MRI is widely used in hospitals and clinics for medical diagnosis, staging and follow-up of disease. Compared to CT, MRI provides better contrast in images of soft-tissues, e.g. in the brain or abdomen. However, it may be perceived as less comfortable by patients, due to the usually longer and louder measurements with the subject in a long, confining tube, though "Open" MRI designs mostly relieve this. Additionally, implants and oth ...
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Simulation
A simulation is the imitation of the operation of a real-world process or system over time. Simulations require the use of Conceptual model, models; the model represents the key characteristics or behaviors of the selected system or process, whereas the simulation represents the evolution of the model over time. Often, computers are used to execute the computer simulation, simulation. Simulation is used in many contexts, such as simulation of technology for performance tuning or optimizing, safety engineering, testing, training, education, and video games. Simulation is also used with scientific modelling of natural systems or human systems to gain insight into their functioning, as in economics. Simulation can be used to show the eventual real effects of alternative conditions and courses of action. Simulation is also used when the real system cannot be engaged, because it may not be accessible, or it may be dangerous or unacceptable to engage, or it is being designed bu ...
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Numerical Integration
In analysis, numerical integration comprises a broad family of algorithms for calculating the numerical value of a definite integral, and by extension, the term is also sometimes used to describe the numerical solution of differential equations. This article focuses on calculation of definite integrals. The term numerical quadrature (often abbreviated to ''quadrature'') is more or less a synonym for ''numerical integration'', especially as applied to one-dimensional integrals. Some authors refer to numerical integration over more than one dimension as cubature; others take ''quadrature'' to include higher-dimensional integration. The basic problem in numerical integration is to compute an approximate solution to a definite integral :\int_a^b f(x) \, dx to a given degree of accuracy. If is a smooth function integrated over a small number of dimensions, and the domain of integration is bounded, there are many methods for approximating the integral to the desired precision. ...
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Bloch Equation
In physics and chemistry, specifically in nuclear magnetic resonance (NMR), magnetic resonance imaging (MRI), and electron spin resonance (ESR), the Bloch equations are a set of macroscopic equations that are used to calculate the nuclear magnetization M = (''M''''x'', ''M''''y'', ''M''''z'') as a function of time when relaxation times ''T''1 and ''T''2 are present. These are phenomenological equations that were introduced by Felix Bloch in 1946. Sometimes they are called the equations of motion of nuclear magnetization. They are analogous to the Maxwell–Bloch equations. In the laboratory (stationary) frame of reference Let M(''t'') = (''Mx''(''t''), ''My''(''t''), ''Mz''(''t'')) be the nuclear magnetization. Then the Bloch equations read: :\frac = \gamma ( \mathbf (t) \times \mathbf (t) ) _x - \frac :\frac = \gamma ( \mathbf (t) \times \mathbf (t) ) _y - \frac :\frac = \gamma ( \mathbf (t) \times \mathbf (t) ) _z - \frac where γ is the gyromagnetic ...
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Single-core
A single-core processor is a microprocessor with a single core on its die. It performs the Instruction cycle, fetch-decode-execute cycle once per clock-cycle, as it only runs on one thread. A computer using a single core CPU is generally slower than a multi-core system. Single core processors used to be widespread in desktop computers, but as applications demanded more processing power, the slower speed of single core systems became a detriment to performance. Windows supported single-core processors up until the release of Windows 11, where a dual-core processor is required. Single core processors are still in use in some niche circumstances. Some older legacy systems like those running antiquated operating systems (e.g. Windows 98) cannot gain any benefit from multi-core processors. Single core processors are also used in hobbyist computers like the Raspberry Pi and Single-board microcontrollers. The production of single-core desktop processors ended in 2013 with the Celeron G47 ...
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Parallel Computing
Parallel computing is a type of computation in which many calculations or processes are carried out simultaneously. Large problems can often be divided into smaller ones, which can then be solved at the same time. There are several different forms of parallel computing: bit-level, instruction-level, data, and task parallelism. Parallelism has long been employed in high-performance computing, but has gained broader interest due to the physical constraints preventing frequency scaling.S.V. Adve ''et al.'' (November 2008)"Parallel Computing Research at Illinois: The UPCRC Agenda" (PDF). Parallel@Illinois, University of Illinois at Urbana-Champaign. "The main techniques for these performance benefits—increased clock frequency and smarter but increasingly complex architectures—are now hitting the so-called power wall. The computer industry has accepted that future performance increases must largely come from increasing the number of processors (or cores) on a die, rather than m ...
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Symbolic Computation
In mathematics and computer science, computer algebra, also called symbolic computation or algebraic computation, is a scientific area that refers to the study and development of algorithms and software for manipulating mathematical expressions and other mathematical objects. Although computer algebra could be considered a subfield of scientific computing, they are generally considered as distinct fields because scientific computing is usually based on numerical computation with approximate floating point numbers, while symbolic computation emphasizes ''exact'' computation with expressions containing variables that have no given value and are manipulated as symbols. Software applications that perform symbolic calculations are called ''computer algebra systems'', with the term ''system'' alluding to the complexity of the main applications that include, at least, a method to represent mathematical data in a computer, a user programming language (usually different from the languag ...
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Simulation Software
Simulation software is based on the process of modeling a real phenomenon with a set of mathematical formulas. It is, essentially, a program that allows the user to observe an operation through simulation without actually performing that operation. Simulation software is used widely to design equipment so that the final product will be as close to design specs as possible without expensive in process modification. Simulation software with real-time response is often used in gaming, but it also has important industrial applications. When the penalty for improper operation is costly, such as airplane pilots, nuclear power plant operators, or chemical plant operators, a mock up of the actual control panel is connected to a real-time simulation of the physical response, giving valuable training experience without fear of a disastrous outcome. Advanced computer programs can simulate power system behavior, weather conditions, electronic circuits, chemical reactions, mechatronics, heat pum ...
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