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Isomap
Isomap is a nonlinear dimensionality reduction method. It is one of several widely used low-dimensional embedding methods. Isomap is used for computing a quasi-isometric, low-dimensional embedding of a set of high-dimensional data points. The algorithm provides a simple method for estimating the intrinsic geometry of a data manifold based on a rough estimate of each data point’s neighbors on the manifold. Isomap is highly efficient and generally applicable to a broad range of data sources and dimensionalities. Introduction Isomap is one representative of isometric mapping methods, and extends metric multidimensional scaling (MDS) by incorporating the geodesic distances imposed by a weighted graph. To be specific, the classical scaling of metric MDS performs low-dimensional embedding based on the pairwise distance between data points, which is generally measured using straight-line Euclidean distance. Isomap is distinguished by its use of the geodesic distance induced by a nei ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nonlinear Dimensionality Reduction
Nonlinear dimensionality reduction, also known as manifold learning, refers to various related techniques that aim to project high-dimensional data onto lower-dimensional latent manifolds, with the goal of either visualizing the data in the low-dimensional space, or learning the mapping (either from the high-dimensional space to the low-dimensional embedding or vice versa) itself. The techniques described below can be understood as generalizations of linear decomposition methods used for dimensionality reduction, such as singular value decomposition and principal component analysis. Applications of NLDR Consider a dataset represented as a matrix (or a database table), such that each row represents a set of attributes (or features or dimensions) that describe a particular instance of something. If the number of attributes is large, then the space of unique possible rows is exponentially large. Thus, the larger the dimensionality, the more difficult it becomes to sample the space ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nonlinear Dimensionality Reduction
Nonlinear dimensionality reduction, also known as manifold learning, refers to various related techniques that aim to project high-dimensional data onto lower-dimensional latent manifolds, with the goal of either visualizing the data in the low-dimensional space, or learning the mapping (either from the high-dimensional space to the low-dimensional embedding or vice versa) itself. The techniques described below can be understood as generalizations of linear decomposition methods used for dimensionality reduction, such as singular value decomposition and principal component analysis. Applications of NLDR Consider a dataset represented as a matrix (or a database table), such that each row represents a set of attributes (or features or dimensions) that describe a particular instance of something. If the number of attributes is large, then the space of unique possible rows is exponentially large. Thus, the larger the dimensionality, the more difficult it becomes to sample the space ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Distance Matrix
In mathematics, computer science and especially graph theory, a distance matrix is a square matrix (two-dimensional array) containing the distances, taken pairwise, between the elements of a set. Depending upon the application involved, the ''distance'' being used to define this matrix may or may not be a metric. If there are elements, this matrix will have size . In graph-theoretic applications the elements are more often referred to as points, nodes or vertices. Non-metric distance matrix In general, a distance matrix is a weighted adjacency matrix of some graph. In a network, a directed graph with weights assigned to the arcs, the distance between two nodes of the network can be defined as the minimum of the sums of the weights on the shortest paths joining the two nodes. This distance function, while well defined, is not a metric. There need be no restrictions on the weights other than the need to be able to combine and compare them, so negative weights are used in some appli ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Multidimensional Scaling
Multidimensional scaling (MDS) is a means of visualizing the level of similarity of individual cases of a dataset. MDS is used to translate "information about the pairwise 'distances' among a set of n objects or individuals" into a configuration of n points mapped into an abstract Cartesian space. More technically, MDS refers to a set of related ordination techniques used in information visualization, in particular to display the information contained in a distance matrix. It is a form of non-linear dimensionality reduction. Given a distance matrix with the distances between each pair of objects in a set, and a chosen number of dimensions, ''N'', an MDS algorithm places each object into ''N''-dimensional space (a lower-dimensional representation) such that the between-object distances are preserved as well as possible. For ''N'' = 1, 2, and 3, the resulting points can be visualized on a scatter plot. Core theoretical contributions to MDS were made by James O. Ramsay of M ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Principal Component Analysis
Principal component analysis (PCA) is a popular technique for analyzing large datasets containing a high number of dimensions/features per observation, increasing the interpretability of data while preserving the maximum amount of information, and enabling the visualization of multidimensional data. Formally, PCA is a statistical technique for reducing the dimensionality of a dataset. This is accomplished by linearly transforming the data into a new coordinate system where (most of) the variation in the data can be described with fewer dimensions than the initial data. Many studies use the first two principal components in order to plot the data in two dimensions and to visually identify clusters of closely related data points. Principal component analysis has applications in many fields such as population genetics, microbiome studies, and atmospheric science. The principal components of a collection of points in a real coordinate space are a sequence of p unit vectors, where th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Spectral Clustering
In multivariate statistics, spectral clustering techniques make use of the Spectrum of a matrix, spectrum (eigenvalues) of the similarity matrix of the data to perform dimensionality reduction before clustering in fewer dimensions. The similarity matrix is provided as an input and consists of a quantitative assessment of the relative similarity of each pair of points in the dataset. In application to image segmentation, spectral clustering is known as segmentation-based object categorization. Definitions Given an enumerated set of data points, the similarity matrix may be defined as a symmetric matrix A, where A_\geq 0 represents a measure of the similarity between data points with indices i and j. The general approach to spectral clustering is to use a standard Cluster analysis, clustering method (there are many such methods, ''k''-means is discussed #Relationship with k-means, below) on relevant eigenvectors of a Laplacian matrix of A. There are many different ways to define ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Kernel PCA
In the field of multivariate statistics, kernel principal component analysis (kernel PCA) is an extension of principal component analysis (PCA) using techniques of kernel methods. Using a kernel, the originally linear operations of PCA are performed in a reproducing kernel Hilbert space. Background: Linear PCA Recall that conventional PCA operates on zero-centered data; that is, :\frac\sum_^N \mathbf_i = \mathbf, where \mathbf_i is one of the N multivariate observations. It operates by diagonalizing the covariance matrix, :C=\frac\sum_^N \mathbf_i\mathbf_i^\top in other words, it gives an eigendecomposition of a matrix, eigendecomposition of the covariance matrix: :\lambda \mathbf=C\mathbf which can be rewritten as :\lambda \mathbf_i^\top \mathbf=\mathbf_i^\top C\mathbf \quad \textrm~i=1,\ldots,N. (See also: Covariance matrix#Covariance matrix as a linear operator, Covariance matrix as a linear operator) Introduction of the Kernel to PCA To understand the utility of kernel PCA, pa ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Mercer's Theorem
In mathematics, specifically functional analysis, Mercer's theorem is a representation of a symmetric positive-definite function on a square as a sum of a convergent sequence of product functions. This theorem, presented in , is one of the most notable results of the work of James Mercer (1883–1932). It is an important theoretical tool in the theory of integral equations; it is used in the Hilbert space theory of stochastic processes, for example the Karhunen–Loève theorem; and it is also used to characterize a symmetric positive semi-definite kernel. Introduction To explain Mercer's theorem, we first consider an important special case; see below for a more general formulation. A ''kernel'', in this context, is a symmetric continuous function : K: ,b\times ,b\rightarrow \mathbb where symmetric means that K(x,y) = K(y,x) for all x,y \in ,b/math>. ''K'' is said to be ''non-negative definite'' (or positive semidefinite) if and only if : \sum_^n\sum_^n K(x_i, x_j) c_i ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Positive Semidefinite Matrix
In mathematics, a symmetric matrix M with real entries is positive-definite if the real number z^\textsfMz is positive for every nonzero real column vector z, where z^\textsf is the transpose of More generally, a Hermitian matrix (that is, a complex matrix equal to its conjugate transpose) is positive-definite if the real number z^* Mz is positive for every nonzero complex column vector z, where z^* denotes the conjugate transpose of z. Positive semi-definite matrices are defined similarly, except that the scalars z^\textsfMz and z^* Mz are required to be positive ''or zero'' (that is, nonnegative). Negative-definite and negative semi-definite matrices are defined analogously. A matrix that is not positive semi-definite and not negative semi-definite is sometimes called indefinite. A matrix is thus positive-definite if and only if it is the matrix of a positive-definite quadratic form or Hermitian form. In other words, a matrix is positive-definite if and only if it defines a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Kernel Method
In machine learning, kernel machines are a class of algorithms for pattern analysis, whose best known member is the support-vector machine (SVM). The general task of pattern analysis is to find and study general types of relations (for example clusters, rankings, principal components, correlations, classifications) in datasets. For many algorithms that solve these tasks, the data in raw representation have to be explicitly transformed into feature vector representations via a user-specified ''feature map'': in contrast, kernel methods require only a user-specified ''kernel'', i.e., a similarity function over all pairs of data points computed using Inner products. The feature map in kernel machines is infinite dimensional but only requires a finite dimensional matrix from user-input according to the Representer theorem. Kernel machines are slow to compute for datasets larger than a couple of thousand examples without parallel processing. Kernel methods owe their name to t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Kernel PCA
In the field of multivariate statistics, kernel principal component analysis (kernel PCA) is an extension of principal component analysis (PCA) using techniques of kernel methods. Using a kernel, the originally linear operations of PCA are performed in a reproducing kernel Hilbert space. Background: Linear PCA Recall that conventional PCA operates on zero-centered data; that is, :\frac\sum_^N \mathbf_i = \mathbf, where \mathbf_i is one of the N multivariate observations. It operates by diagonalizing the covariance matrix, :C=\frac\sum_^N \mathbf_i\mathbf_i^\top in other words, it gives an eigendecomposition of a matrix, eigendecomposition of the covariance matrix: :\lambda \mathbf=C\mathbf which can be rewritten as :\lambda \mathbf_i^\top \mathbf=\mathbf_i^\top C\mathbf \quad \textrm~i=1,\ldots,N. (See also: Covariance matrix#Covariance matrix as a linear operator, Covariance matrix as a linear operator) Introduction of the Kernel to PCA To understand the utility of kernel PCA, pa ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Parallel Transport
In geometry, parallel transport (or parallel translation) is a way of transporting geometrical data along smooth curves in a manifold. If the manifold is equipped with an affine connection (a covariant derivative or connection (vector bundle), connection on the tangent bundle), then this connection allows one to transport vectors of the manifold along curves so that they stay ''parallel'' with respect to the connection. The parallel transport for a connection thus supplies a way of, in some sense, moving the local geometry of a manifold along a curve: that is, of ''connecting'' the geometries of nearby points. There may be many notions of parallel transport available, but a specification of one — one way of connecting up the geometries of points on a curve — is tantamount to providing a ''connection''. In fact, the usual notion of connection is the infinitesimal analog of parallel transport. Or, ''vice versa'', parallel transport is the local realization of a conne ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
