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Hynobius Fossigenus
''Hynobius fossigenus'' is a species of salamander in the family Hynobiidae, and is found in some prefectures in Kantō and Chūbu districts in Japan. Like all species in the genus ''Hynobius'', it has lungs, its tail is smaller than its body, and it does not have claws on its fingertips. However, characteristics such as its purplish coloration with golden spots, its size, and its use of lotic waters to reproduce make this species different from all the others. The individuals breed between December and April in mountain streams surrounded by ''Cryptomeria japonica'' evergreen forests. After mating, the females lay their eggs in envelopes, which are thick, transparent, and resistant, where they remain for sixty days, when the embryo fully develops in the egg. After hatching, the tadpoles leave the envelope and start living under rocks or at the bottom of streams, completing their metamorphosis within a year. The males become adults around the age of five, while the females ...
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Salamander
Salamanders are a group of amphibians typically characterized by their lizard-like appearance, with slender bodies, blunt snouts, short limbs projecting at right angles to the body, and the presence of a tail in both larvae and adults. All ten extant salamander families are grouped together under the order Urodela. Salamander diversity is highest in eastern North America, especially in the Appalachian Mountains; most species are found in the Holarctic realm, with some species present in the Neotropical realm. Salamanders rarely have more than four toes on their front legs and five on their rear legs, but some species have fewer digits and others lack hind limbs. Their permeable skin usually makes them reliant on habitats in or near water or other cool, damp places. Some salamander species are fully aquatic throughout their lives, some take to the water intermittently, and others are entirely terrestrial as adults. This group of amphibians is capable of regenerating lost lim ...
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PeerJ
''PeerJ'' is an open access peer-reviewed scientific mega journal covering research in the biological and medical sciences. It is published by a company of the same name that was co-founded by CEO Jason Hoyt (formerly at Mendeley) and publisher Peter Binfield (formerly at '' PLOS One''), with initial financial backing of US$950,000 from O'Reilly Media's O'Reilly AlphaTech Ventures, and later funding from Sage Publishing. PeerJ officially launched in June 2012, started accepting submissions on December 3, 2012, and published its first articles on February 12, 2013. The company is a member of CrossRef, CLOCKSS, ORCID, and the Open Access Scholarly Publishers Association. The company's offices are in Corte Madera (California, USA), and London (Great Britain). Submitted research is judged solely on scientific and methodological soundness (as at '' PLoS ONE''), with a facility for peer reviews to be published alongside each paper. Business model ''PeerJ'' uses a business model th ...
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Fault (geology)
In geology, a fault is a planar fracture or discontinuity in a volume of rock across which there has been significant displacement as a result of rock-mass movements. Large faults within Earth's crust result from the action of plate tectonic forces, with the largest forming the boundaries between the plates, such as the megathrust faults of subduction zones or transform faults. Energy release associated with rapid movement on active faults is the cause of most earthquakes. Faults may also displace slowly, by aseismic creep. A ''fault plane'' is the plane that represents the fracture surface of a fault. A ''fault trace'' or ''fault line'' is a place where the fault can be seen or mapped on the surface. A fault trace is also the line commonly plotted on geologic maps to represent a fault. A ''fault zone'' is a cluster of parallel faults. However, the term is also used for the zone of crushed rock along a single fault. Prolonged motion along closely spaced faults can blur the ...
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Binomial Nomenclature
In taxonomy, binomial nomenclature ("two-term naming system"), also called nomenclature ("two-name naming system") or binary nomenclature, is a formal system of naming species of living things by giving each a name composed of two parts, both of which use Latin grammatical forms, although they can be based on words from other languages. Such a name is called a binomial name (which may be shortened to just "binomial"), a binomen, name or a scientific name; more informally it is also historically called a Latin name. The first part of the name – the '' generic name'' – identifies the genus to which the species belongs, whereas the second part – the specific name or specific epithet – distinguishes the species within the genus. For example, modern humans belong to the genus ''Homo'' and within this genus to the species ''Homo sapiens''. ''Tyrannosaurus rex'' is likely the most widely known binomial. The ''formal'' introduction of this system of naming species is credit ...
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Phylogenetics
In biology, phylogenetics (; from Greek language, Greek wikt:φυλή, φυλή/wikt:φῦλον, φῦλον [] "tribe, clan, race", and wikt:γενετικός, γενετικός [] "origin, source, birth") is the study of the evolutionary history and relationships among or within groups of organisms. These relationships are determined by Computational phylogenetics, phylogenetic inference methods that focus on observed heritable traits, such as DNA sequences, Protein, protein Amino acid, amino acid sequences, or Morphology (biology), morphology. The result of such an analysis is a phylogenetic tree—a diagram containing a hypothesis of relationships that reflects the evolutionary history of a group of organisms. The tips of a phylogenetic tree can be living taxa or fossils, and represent the "end" or the present time in an evolutionary lineage. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the tree. An un ...
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Karyotype
A karyotype is the general appearance of the complete set of metaphase chromosomes in the cells of a species or in an individual organism, mainly including their sizes, numbers, and shapes. Karyotyping is the process by which a karyotype is discerned by determining the chromosome complement of an individual, including the number of chromosomes and any abnormalities. A karyogram or idiogram is a graphical depiction of a karyotype, wherein chromosomes are organized in pairs, ordered by size and position of centromere for chromosomes of the same size. Karyotyping generally combines light microscopy and photography, and results in a photomicrographic (or simply micrographic) karyogram. In contrast, a schematic karyogram is a designed graphic representation of a karyotype. In schematic karyograms, just one of the sister chromatids of each chromosome is generally shown for brevity, and in reality they are generally so close together that they look as one on photomicrographs as well ...
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Hida Salamander
The Hida salamander or Hondo salamander (''Hynobius kimurae'') is a species of salamander in the family Hynobiidae, the Asiatic salamanders. It is endemic to central and western Honshu, Japan. It lives in deciduous, coniferous, and mixed forests, where it breeds in streams. The egg sacs of this species were reported to display blue-to-yellow iridescent glow due to a quasi-periodic diffraction grating In optics, a diffraction grating is an optical component with a periodic structure that diffracts light into several beams travelling in different directions (i.e., different diffraction angles). The emerging coloration is a form of structura ... structure embedded within the enveloppes of the egg sacs. These salamanders typically spawn from February to April, leading some to metamorphose in late September while others wait for the following year to do so after winter is over. References Hynobius Endemic amphibians of Japan Amphibians described in 1923 Taxa named by ...
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Paratype
In zoology and botany, a paratype is a specimen of an organism that helps define what the scientific name of a species and other taxon actually represents, but it is not the holotype (and in botany is also neither an isotype nor a syntype). Often there is more than one paratype. Paratypes are usually held in museum research collections. The exact meaning of the term ''paratype'' when it is used in zoology is not the same as the meaning when it is used in botany. In both cases however, this term is used in conjunction with ''holotype''. Zoology In zoological nomenclature, a paratype is officially defined as "Each specimen of a type series other than the holotype.", ''International Code of Zoological Nomenclature'' In turn, this definition relies on the definition of a "type series". A type series is the material (specimens of organisms) that was cited in the original publication of the new species or subspecies, and was not excluded from being type material by the author (th ...
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Hinode, Tokyo
is a Towns of Japan, town located in the western portion of Tokyo Metropolis, Japan. , the town had an estimated population of 16,563, and a population density of 590 persons per km2. The total area of the town is . Geography Hinode is located in the foothills of the Okutama Mountains of western Tokyo. The highest point is Mount Hinode at 902 m. The Hirai and Ōguno Rivers drain the town. Surrounding municipalities Tokyo Metropolis *Ōme, Tokyo, Ōme *Akiruno, Tokyo, Akiruno Climate Hinode has a Humid subtropical climate (Köppen ''Cfa'') characterized by warm summers and cool winters with light to no snowfall. The average annual temperature in Hinode is 12.3 °C. The average annual rainfall is 2998 mm with September as the wettest month. The temperatures are highest on average in August, at around 23.5 °C, and lowest in January, at around 0.7 °C. Demographics Per Japanese census data, the population of Hinode increased rapidly in the 1970s, but has rema ...
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Stream
A stream is a continuous body of water, body of surface water Current (stream), flowing within the stream bed, bed and bank (geography), banks of a channel (geography), channel. Depending on its location or certain characteristics, a stream may be referred to by a variety of local or regional names. Long large streams are usually called rivers, while smaller, less voluminous and more intermittent river, intermittent streams are known as streamlets, brooks or creeks. The flow of a stream is controlled by three inputs – surface runoff (from precipitation or meltwater), daylighting (streams), daylighted subterranean river, subterranean water, and surfaced groundwater (Spring (hydrology), spring water). The surface and subterranean water are highly variable between periods of rainfall. Groundwater, on the other hand, has a relatively constant input and is controlled more by long-term patterns of precipitation. The stream encompasses surface, subsurface and groundwater fluxes th ...
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Holotype
A holotype is a single physical example (or illustration) of an organism, known to have been used when the species (or lower-ranked taxon) was formally described. It is either the single such physical example (or illustration) or one of several examples, but explicitly designated as the holotype. Under the International Code of Zoological Nomenclature (ICZN), a holotype is one of several kinds of name-bearing types. In the International Code of Nomenclature for algae, fungi, and plants (ICN) and ICZN, the definitions of types are similar in intent but not identical in terminology or underlying concept. For example, the holotype for the butterfly '' Plebejus idas longinus'' is a preserved specimen of that subspecies, held by the Museum of Comparative Zoology at Harvard University. In botany, an isotype is a duplicate of the holotype, where holotype and isotypes are often pieces from the same individual plant or samples from the same gathering. A holotype is not necessarily "typ ...
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16S Ribosomal RNA
16 S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rRNA gene and are used in reconstructing phylogenies, due to the slow rates of evolution of this region of the gene. Carl Woese and George E. Fox were two of the people who pioneered the use of 16S rRNA in phylogenetics in 1977. Multiple sequences of the 16S rRNA gene can exist within a single bacterium. Functions * Like the large (23S) ribosomal RNA, it has a structural role, acting as a scaffold defining the positions of the ribosomal proteins. * The 3-end contains the anti- Shine-Dalgarno sequence, which binds upstream to the AUG start codon on the mRNA. The 3-end of 16S RNA binds to the proteins S1 and S21 which are known to be involved in initiation of protein synthesis * Interacts with 23S, aiding in the binding of the two ribosomal s ...
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