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GigaDB
GigaDB (GigaScience DataBase) is a disciplinary repository launched in 2011 with the aim of ensuring long-term access to massive multidimensional datasets from life science and biomedical science studies. The datasets are diverse and include genomic, transcriptomic, and imaging data. The datasets are curated by GigaDB biocurators who are employed by BGI and China National GeneBank. In its inception, GigaDB was designed as the supporting archive for large-scale research data submitted to the data journal ''GigaScience'' whose focus is on ensuring reproducibility and reusability of biological and biomedical research. The scope of GigaDB has broadened to include computational research objects such as synthetic data, software and workflows. The database uses Genomics Standard Consortium (GSC)-approved sample attributes and standards, also collaborating with the GSC to ensure data are comprehensive and discoverable. Datasets hosted in GigaDB are defined as a group of files and metadat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GigaScience
''GigaScience'' is a peer-reviewed scientific journal that was established in 2012. It covers research and large data-sets that result from work in the biomedical and life sciences. The editor-in-chief is Scott Edmunds. Originally, the journal was co-published by BioMed Central and the Beijing Genomics Institute (BGI). In 2016, it left BioMed Central to form a new partnership between the GigaScience Press department of BGI and Oxford University Press. In 2018, ''GigaScience'' won the Association of American Publishers' PROSE Award for Innovation in journal publishing in the multidisciplinary category. GigaDB and GigaGalaxy In order to host the large data-sets the journal covers, ''GigaScience'' has built and integrated its own disciplinary repository: GigaDB. The journal also provides a Galaxy-based platform to analyze data, ''GigaGalaxy''. The journal has tried to promote the use of Galaxy pipelines as publishable research outputs through its 'Galaxy Series' of articles. Abstr ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Disciplinary Repository
A disciplinary repository (or subject repository) is an online archive containing works or data associated with these works of scholars in a particular subject area. Disciplinary repositories can accept work from scholars from any institution. A disciplinary repository shares the roles of collecting, disseminating, and archiving work with other repositories, but is focused on a particular subject area. These collections can include academic and research papers. Disciplinary repositories can acquire their content in many ways. Many rely on author or organization submissions, such as SSRN. Others such as CiteSeerX crawl the web for scholar and researcher websites and download publicly available academic papers from those sites. AgEcon, established in 1995, grew as a result of active involvement of academia and societies. A disciplinary repository generally covers one broad based discipline, with contributors from many different institutions supported by a variety of funders; the r ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biological Databases
Biological databases are libraries of biological sciences, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analysis. They contain information from research areas including genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure, localization (both cellular and chromosomal), clinical effects of mutations as well as similarities of biological sequences and structures. Biological databases can be classified by the kind of data they collect (see below). Broadly, there are molecular databases (for sequences, molecules, etc.), functional databases (for physiology, enzyme activities, phenotypes, ecology etc), taxonomic databases (for species and other taxonomic ranks), images and other media, or specimens (for museum collections etc.) Databases are important tools in assisting scientists to analyze and explain ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Discoverability
Discoverability is the degree to which something, especially a piece of content or information, can be found in a search of a file, database, or other information system. Discoverability is a concern in library and information science, many aspects of digital media, software and web development, and in marketing, since products and services cannot be used if people cannot find it or do not understand what it can be used for. Metadata, or "information about information," such as a book's title, a product's description, or a website's keywords, affects how discoverable something is on a database or online. Adding metadata to a product that is available online can make it easier for end users to find the product. For example, if a song file is made available online, making the title, name of the band, genre, year of release, and other pertinent information available in connection with this song means the file can be retrieved more easily. Organizing information by putting it into alpha ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Clarivate Analytics
Clarivate Plc is a British-American publicly traded analytics company that operates a collection of subscription-based services, in the areas of bibliometrics and scientometrics; business / market intelligence, and competitive profiling for pharmacy and biotech, patents, and regulatory compliance; trademark protection, and domain and brand protection. In the academy and the scientific community, Clarivate is known for being the company which calculates the impact factor, using data from its Web of Science product family, that also includes services/applications such as Publons, EndNote, EndNote Click, and ScholarOne. Its other product families are Cortellis, DRG, CPA Global, Derwent, MarkMonitor, CompuMark, and Darts-ip, and also the various ProQuest products and services. Clarivate was formed in 2016, following the acquisition of Thomson Reuters' Intellectual Property and Science Business by Onex Corporation and Baring Private Equity Asia. Clarivate has been growing fa ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
DataCite
DataCite is an international not-for-profit organization which aims to improve ''data citation'' in order to: *establish easier access to research data on the Internet *increase acceptance of research data as legitimate, citable contributions to the scholarly record *support data archiving that will permit results to be verified and re-purposed for future study. Background In August 2009 a paper was published laying out an approach for a global registration agency for research data. DataCite was subsequently founded in London on 1 December 2009 by organisations from 6 countries: the British Library; the Technical Information Center of Denmark (DTIC); the TU Delft Library from the Netherlands; the National Research Council’s Canada Institute for Scientific and Technical Information (NRC-CISTI); the California Digital Library (University of California Curation Center - UC3); Purdue University (USA); and the German National Library of Science and Technology (TIB). After the found ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Digital Object Identifier
A digital object identifier (DOI) is a persistent identifier or handle used to uniquely identify various objects, standardized by the International Organization for Standardization (ISO). DOIs are an implementation of the Handle System; they also fit within the URI system ( Uniform Resource Identifier). They are widely used to identify academic, professional, and government information, such as journal articles, research reports, data sets, and official publications. DOIs have also been used to identify other types of information resources, such as commercial videos. A DOI aims to resolve to its target, the information object to which the DOI refers. This is achieved by binding the DOI to metadata about the object, such as a URL where the object is located. Thus, by being actionable and interoperable, a DOI differs from ISBNs or ISRCs which are identifiers only. The DOI system uses the indecs Content Model for representing metadata. The DOI for a document remains fixed over t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genomic Standards Consortium
The Genomic Standards Consortium (GSC) is an initiative working towards richer descriptions of our collection of genomes, metagenomes and marker genes. Established in September 2005, this international community includes representatives from a range of major sequencing and bioinformatics centres (including NCBI, EMBL, DDBJ, JCVI, JGI, EBI, Sanger, FIG) and research institutions. The goal of the GSC is to promote mechanisms for standardizing the description of (meta)genomes, including the exchange and integration of (meta)genomic data. The number and pace of genomic and metagenomic sequencing projects will only increase as the use of ultra-high-throughput methods becomes common place and standards are vital to scientific progress and data sharing. Mission Community-driven standards have the best chance of success if developed within the auspices of international working groups. Participants in the GSC include biologists, computer scientists, those building genomic databases and ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Publishing
Data publishing (also data publication) is the act of releasing research data in published form for use by others. It is a practice consisting in preparing certain data or data set(s) for public use thus to make them available to everyone to use as they wish. This practice is an integral part of the open science movement. There is a large and multidisciplinary consensus on the benefits resulting from this practice. The main goal is to elevate data to be first class research outputs. There are a number of initiatives underway as well as points of consensus and issues still in contention. There are several distinct ways to make research data available, including: * publishing data as supplemental material associated with a research article, typically with the data files hosted by the publisher of the article * hosting data on a publicly available website, with files available for download * hosting data in a repository that has been developed to support data publication, e.g. f ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
_milestones.jpg "Click for more on -> Genomic Standards Consortium")
