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Generic Model Organism Database
The Generic Model Organism Database (GMOD) project provides biological research communities with a toolkit of open-source software components for visualizing, annotating, managing, and storing biological data. The GMOD project is funded by the United States National Institutes of Health, National Science Foundation and the USDA Agricultural Research Service. History The GMOD project was started in the early 2000s as a collaboration between several model organism databases (MODs) who shared a need to create similar software tools for processing data from sequencing projects. MODs, or organism-specific databases, describe genome and other information about important experimental organisms in the life sciences and capture the large volumes of data and information being generated by modern biology. Rather than each group designing their own software, four major MODs--FlyBase, Saccharomyces Genome Database, Mouse Genome Database, and WormBase—worked together to create applications ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GMOD Project Logo
''Garry's Mod'' is a 2006 sandbox game developed by Facepunch Studios and published by Valve. The base game mode of ''Garry's Mod'' has no set objectives and provides the player with a world in which to freely manipulate objects. Other game modes, notably ''Trouble in Terrorist Town'' and ''Prop Hunt'', are created by other developers as mods and are installed separately, by means such as the Steam Workshop. ''Garry's Mod'' was created by Garry Newman as a mod for Valve's Source game engine and released in December 2004, before being expanded into a standalone release that was published by Valve in November 2006. Ports of the original Windows version for Mac OS X and Linux followed in September 2010 and June 2013, respectively. As of September 2021, ''Garry's Mod'' has sold more than 20 million copies. Gameplay ''Garry's Mod'' is a physics-based sandbox game that, in its base game mode, has no set objectives. The player is able to spawn non-player characters, ragdo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BioCyc Database Collection
The BioCyc database collection is an assortment of organism specific Pathway/Genome Databases (PGDBs) that provide reference to genome and metabolic pathway information for thousands of organisms. As of June 2021, there were over 17,800 databases within BioCyc. SRI International, of the SRI International based in Menlo Park, California, maintains the BioCyc database family. Categories of Databases Based on the manual curation done, BioCyc database family is divided into 3 tiers: Tier 1: Databases which have received at least one year of literature based manual curation. Currently there are seven databases in Tier 1. Out of the seven, MetaCyc is a major database that contains almost 2500 metabolic pathways from many organisms. The other important Tier 1 database is HumanCyc which contains around 300 metab ...[...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
HapMap
The International HapMap Project was an organization that aimed to develop a haplotype map (HapMap) of the human genome, to describe the common patterns of human genetic variation. HapMap is used to find genetic variants affecting health, disease and responses to drugs and environmental factors. The information produced by the project is made freely available for research. The International HapMap Project is a collaboration among researchers at academic centers, non-profit biomedical research groups and private companies in Canada, China (including Hong Kong), Japan, Nigeria, the United Kingdom, and the United States. It officially started with a meeting on October 27 to 29, 2002, and was expected to take about three years. It comprises two phases; the complete data obtained in Phase I were published on 27 October 2005. The analysis of the Phase II dataset was published in October 2007. The Phase III dataset was released in spring 2009 and the publication presenting the final resul ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GeneDB
GeneDB is a genome database for eukaryotic and prokaryotic pathogen In biology, a pathogen ( el, πάθος, "suffering", "passion" and , "producer of") in the oldest and broadest sense, is any organism or agent that can produce disease. A pathogen may also be referred to as an infectious agent, or simply a germ ...s. References External links * http://www.genedb.org Biological databases Pathogenic microbes {{Biodatabase-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
EcoCyc
In bioinformatics EcoCyc is a biological database for the bacterium ''Escherichia coli'' K-12. The EcoCyc project performs literature-based curation of the ''E. coli'' genome, and of ''E. coli'' transcriptional regulation, transporters, and metabolic pathways. EcoCyc contains written summaries of ''E. coli'' genes, distilled from over 36,000 scientific articles. EcoCyc is also a description of the genome and cellular networks of ''E. coli'' that supports scientists to carry out computational analyses. Data objects in the EcoCyc database describe each ''E. coli'' gene and gene product. Database objects also describe molecular interactions, including metabolic pathways In biochemistry, a metabolic pathway is a linked series of chemical reactions occurring within a cell. The reactants, products, and intermediates of an enzymatic reaction are known as metabolites, which are modified by a sequence of chemical re ..., transport events, and the regulation of gene expression. EcoCyc ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
DictyBase
dictyBase is an online bioinformatics database for the model organism ''Dictyostelium discoideum ''Dictyostelium discoideum'' is a species of soil-dwelling amoeba belonging to the phylum Amoebozoa, infraphylum Mycetozoa. Commonly referred to as slime mold, ''D. discoideum'' is a eukaryote that transitions from a collection of unicellular ...''. Tools dictyBase offers many ways of searching and retrieving data from the database: * dictyMart - a tool for retrieving varied information on many genes (or the sequences of those genes). * Genome Browser - browse the genes of ''D. discoideum'' in their genomic context. References External links dictyBase Developmental biology Model organism databases Mycetozoa {{Database-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Database Of Genomic Variants
In computing, a database is an organized collection of data In the pursuit of knowledge, data (; ) is a collection of discrete values that convey information, describing quantity, quality, fact, statistics, other basic units of meaning, or simply sequences of symbols that may be further interpreted ... stored and accessed electronically. Small databases can be stored on a file system, while large databases are hosted on computer clusters or cloud storage. The Database design, design of databases spans formal techniques and practical considerations, including data modeling, efficient data representation and storage, query languages, Database security, security and Information privacy, privacy of sensitive data, and distributed computing issues, including supporting Concurrent computing, concurrent access and fault tolerance. A #Database management system, database management system (DBMS) is the software that interacts with end users, applications, and the database itsel ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bovine Genome Database
The Bovine Genome Database is an integrated database for the bovine genome. See also * Bovine genome The genome of a female Hereford cow was published in 2009. It was sequenced by the Bovine Genome Sequencing and Analysis Consortium, a team of researchers led by the National Institutes of Health and the U.S. Department of Agriculture. It was par ... References External links * http://BovineGenome.org Genome databases Cattle {{Biodatabase-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Beebase
BeeBase is an online bioinformatics database that displays data related to ''Apis mellifera'', the European honey bee along with some pathogens and other species. It was developed in collaboration with the Honey Bee Genome Sequencing Consortium.BeeBase website - http://hymenopteragenome.org/beebase/ In 2020 it was archived and replaced by the Hymenoptera Genome Database. Data The site hosts the genome sequence for ''apis mellifera'' along with those of the following pathogens: * ''Bombus terrestris'' * ''Bombus impatiens'' Two additional species are under analysis: * ''Apis dorsata'' * ''Apis florea'' In Feb 2007, ''BeeBase'' consisted of a GBrowser-based genome viewer and a CMap-based] comparative map viewer, both modules of the Generic Model Organism Database (GMOD) project. The genome viewer included tracks for known honey bee genes, predicted gene sets (Ensembl, NCBI, EMBL-Heidelberg), STS markers (Solignac and Hunt linkage maps), honey bee expressed sequence tags (ESTs) ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
