Digital Morse Theory
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Digital Morse Theory
In mathematics, digital Morse theory is a digital adaptation of continuum Morse theory for scalar volume data. This is not about the Samuel Morse's Morse code of long and short clicks or tones used in manual electric telegraphy. The term was first promulgated by DB Karron based on the work of JL Cox and DB Karron. The main utility of a digital Morse theory is that it serves to provide a theoretical basis for isosurfaces (a kind of embedded manifold submanifold) and perpendicular streamlines in a digital context. The intended main application of DMT is in the rapid semiautomatic segmentation objects such as organs and anatomic structures from stacks of medical images such as produced by three-dimensional computed tomography by CT or MRI technology. DMT Tree A DMT tree is a digital version of a Reeb graph or contour tree graph, showing the relationship and connectivity of one isovalued defined object to another. Typically, these are nested objects, one inside another, giving a p ...
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Mathematics
Mathematics is an area of knowledge that includes the topics of numbers, formulas and related structures, shapes and the spaces in which they are contained, and quantities and their changes. These topics are represented in modern mathematics with the major subdisciplines of number theory, algebra, geometry, and analysis, respectively. There is no general consensus among mathematicians about a common definition for their academic discipline. Most mathematical activity involves the discovery of properties of abstract objects and the use of pure reason to prove them. These objects consist of either abstractions from nature orin modern mathematicsentities that are stipulated to have certain properties, called axioms. A ''proof'' consists of a succession of applications of deductive rules to already established results. These results include previously proved theorems, axioms, andin case of abstraction from naturesome basic properties that are considered true starting points of ...
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Morse Theory
In mathematics, specifically in differential topology, Morse theory enables one to analyze the topology of a manifold by studying differentiable functions on that manifold. According to the basic insights of Marston Morse, a typical differentiable function on a manifold will reflect the topology quite directly. Morse theory allows one to find CW structures and handle decompositions on manifolds and to obtain substantial information about their homology. Before Morse, Arthur Cayley and James Clerk Maxwell had developed some of the ideas of Morse theory in the context of topography. Morse originally applied his theory to geodesics ( critical points of the energy functional on the space of paths). These techniques were used in Raoul Bott's proof of his periodicity theorem. The analogue of Morse theory for complex manifolds is Picard–Lefschetz theory. Basic concepts To illustrate, consider a mountainous landscape surface M (more generally, a manifold). If f is the function M ...
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Voxel
In 3D computer graphics, a voxel represents a value on a regular grid in three-dimensional space. As with pixels in a 2D bitmap, voxels themselves do not typically have their position (i.e. coordinates) explicitly encoded with their values. Instead, rendering systems infer the position of a voxel based upon its position relative to other voxels (i.e., its position in the data structure that makes up a single volumetric image). In contrast to pixels and voxels, polygons are often explicitly represented by the coordinates of their vertices (as points). A direct consequence of this difference is that polygons can efficiently represent simple 3D structures with much empty or homogeneously filled space, while voxels excel at representing regularly sampled spaces that are non-homogeneously filled. Voxels are frequently used in the visualization and analysis of medical and scientific data (e.g. geographic information systems (GIS)). Some volumetric displays use voxels to describe ...
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Samuel Morse
Samuel Finley Breese Morse (April 27, 1791 – April 2, 1872) was an American inventor and painter. After having established his reputation as a portrait painter, in his middle age Morse contributed to the invention of a single-wire telegraph system based on European telegraphs. He was a co-developer of Morse code and helped to develop the commercial use of telegraphy. Personal life Samuel F. B. Morse was born in Charlestown, Massachusetts, the first child of the pastor Jedidiah Morse (1761–1826), who was also a geographer, and his wife Elizabeth Ann Finley Breese (1766–1828). His father was a great preacher of the Calvinist faith and supporter of the Federalist Party. He thought it helped preserve Puritan traditions (strict observance of Sabbath, among other things), and believed in the Federalist support of an alliance with Britain and a strong central government. Morse strongly believed in education within a Federalist framework, alongside the instillation of Calvin ...
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Morse Code
Morse code is a method used in telecommunication to encode text characters as standardized sequences of two different signal durations, called ''dots'' and ''dashes'', or ''dits'' and ''dahs''. Morse code is named after Samuel Morse, one of the inventors of the telegraph. International Morse code encodes the 26  basic Latin letters through , one accented Latin letter (), the Arabic numerals, and a small set of punctuation and procedural signals ( prosigns). There is no distinction between upper and lower case letters. Each Morse code symbol is formed by a sequence of ''dits'' and ''dahs''. The ''dit'' duration is the basic unit of time measurement in Morse code transmission. The duration of a ''dah'' is three times the duration of a ''dit''. Each ''dit'' or ''dah'' within an encoded character is followed by a period of signal absence, called a ''space'', equal to the ''dit'' duration. The letters of a word are separated by a space of duration equal to three ''dits'', ...
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Isosurface
An isosurface is a three-dimensional analog of an isoline. It is a surface that represents points of a constant value (e.g. pressure, temperature, velocity, density) within a volume of space; in other words, it is a level set of a continuous function whose domain is 3-space. The term ''isoline'' is also sometimes used for domains of more than 3 dimensions. Applications Isosurfaces are normally displayed using computer graphics, and are used as data visualization methods in computational fluid dynamics (CFD), allowing engineers to study features of a fluid flow (gas or liquid) around objects, such as aircraft wings. An isosurface may represent an individual shock wave in supersonic flight, or several isosurfaces may be generated showing a sequence of pressure values in the air flowing around a wing. Isosurfaces tend to be a popular form of visualization for volume datasets since they can be rendered by a simple polygonal model, which can be drawn on the screen very quic ...
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Submanifold
In mathematics, a submanifold of a manifold ''M'' is a subset ''S'' which itself has the structure of a manifold, and for which the inclusion map satisfies certain properties. There are different types of submanifolds depending on exactly which properties are required. Different authors often have different definitions. Formal definition In the following we assume all manifolds are differentiable manifolds of class ''C''''r'' for a fixed , and all morphisms are differentiable of class ''C''''r''. Immersed submanifolds An immersed submanifold of a manifold ''M'' is the image ''S'' of an immersion map ; in general this image will not be a submanifold as a subset, and an immersion map need not even be injective (one-to-one) – it can have self-intersections. More narrowly, one can require that the map be an injection (one-to-one), in which we call it an injective immersion, and define an immersed submanifold to be the image subset ''S'' together with a topology and differentia ...
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Streamlines, Streaklines, And Pathlines
Streamlines, streaklines and pathlines are field lines in a fluid flow. They differ only when the flow changes with time, that is, when the flow is not steady. Considering a velocity vector field in three-dimensional space in the framework of continuum mechanics, we have that: * Streamlines are a family of curves whose tangent vectors constitute the velocity vector field of the flow. These show the direction in which a massless fluid element will travel at any point in time. * Streaklines are the loci of points of all the fluid particles that have passed continuously through a particular spatial point in the past. Dye steadily injected into the fluid at a fixed point extends along a streakline. * Pathlines are the trajectories that individual fluid particles follow. These can be thought of as "recording" the path of a fluid element in the flow over a certain period. The direction the path takes will be determined by the streamlines of the fluid at each moment in time. * T ...
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Reeb Graph
A Reeb graphY. Shinagawa, T.L. Kunii, and Y.L. Kergosien, 1991. Surface coding based on Morse theory. IEEE Computer Graphics and Applications, 11(5), pp.66-78 (named after Georges Reeb by René Thom) is a mathematical object reflecting the evolution of the level sets of a real-valued function on a manifold. According to a similar concept was introduced by G.M. Adelson-Velskii and A.S. Kronrod and applied to analysis of Hilbert's thirteenth problem. Proposed by G. Reeb as a tool in Morse theory, Reeb graphs are the natural tool to study multivalued functional relationships between 2D scalar fields \psi, \lambda, and \phi arising from the conditions \nabla \psi = \lambda \nabla \phi and \lambda \neq 0, because these relationships are single-valued when restricted to a region associated with an individual edge of the Reeb graph. This general principle was first used to study neutral surfaces in oceanography. Reeb graphs have also found a wide variety of applications in comput ...
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Topological Data Analysis
In applied mathematics, topological based data analysis (TDA) is an approach to the analysis of datasets using techniques from topology. Extraction of information from datasets that are high-dimensional, incomplete and noisy is generally challenging. TDA provides a general framework to analyze such data in a manner that is insensitive to the particular metric chosen and provides dimensionality reduction and robustness to noise. Beyond this, it inherits functoriality, a fundamental concept of modern mathematics, from its topological nature, which allows it to adapt to new mathematical tools. The initial motivation is to study the shape of data. TDA has combined algebraic topology and other tools from pure mathematics to allow mathematically rigorous study of "shape". The main tool is persistent homology, an adaptation of homology to point cloud data. Persistent homology has been applied to many types of data across many fields. Moreover, its mathematical foundation is also of theore ...
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Discrete Morse Theory
Discrete Morse theory is a combinatorial adaptation of Morse theory developed by Robin Forman. The theory has various practical applications in diverse fields of applied mathematics and computer science, such as configuration spaces, homology computation, denoising, mesh compression, and topological data analysis. Notation regarding CW complexes Let X be a CW complex and denote by \mathcal its set of cells. Define the ''incidence function'' \kappa\colon\mathcal \times \mathcal \to \mathbb in the following way: given two cells \sigma and \tau in \mathcal, let \kappa(\sigma,~\tau) be the degree of the attaching map from the boundary of \sigma to \tau. The boundary operator is the endomorphism \partial of the free abelian group generated by \mathcal defined by :\partial(\sigma) = \sum_\kappa(\sigma,\tau)\tau. It is a defining property of boundary operators that \partial\circ\partial \equiv 0. In more axiomatic definitions one can find the requirement that \forall \sigma,\tau^ \in ...
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Stratified Morse Theory
In mathematics, stratified Morse theory is an analogue to Morse theory for general stratified spaces, originally developed by Mark Goresky and Robert MacPherson. The main point of the theory is to consider functions f : M \to \mathbb R and consider how the stratified space f^(-\infty,c] changes as the real number c \in \mathbb R changes. Morse theory of stratified spaces has uses everywhere from pure mathematics topics such as braid groups and Lawrence–Krammer representation, representations to robot motion planning and potential theory. A popular application in pure mathematics is Morse theory on manifolds with boundary, and manifolds with corners. See also * Digital Morse theory * Discrete Morse theory * Level-set method Level-set methods (LSM) are a conceptual framework for using level sets as a tool for numerical analysis of surfaces and shapes. The advantage of the level-set model is that one can perform numerical computations involving curves and surfaces o ... ...
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