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Dunn Index
The Dunn index (DI) (introduced by J. C. Dunn in 1974) is a metric for evaluating clustering algorithms. This is part of a group of validity indices including the Davies–Bouldin index or Silhouette index, in that it is an internal evaluation scheme, where the result is based on the clustered data itself. As do all other such indices, the aim is to identify sets of clusters that are compact, with a small variance between members of the cluster, and well separated, where the means of different clusters are sufficiently far apart, as compared to the within cluster variance. For a given assignment of clusters, a higher Dunn index indicates better clustering. One of the drawbacks of using this is the computational cost as the number of clusters and dimensionality of the data increase. Preliminaries There are many ways to define the size or diameter of a cluster. It could be the distance between the farthest two points inside a cluster, it could be the mean of all the pairwise distance ...
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Clustering Algorithm
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some sense) to each other than to those in other groups (clusters). It is a main task of exploratory data analysis, and a common technique for statistical data analysis, used in many fields, including pattern recognition, image analysis, information retrieval, bioinformatics, data compression, computer graphics and machine learning. Cluster analysis itself is not one specific algorithm, but the general task to be solved. It can be achieved by various algorithms that differ significantly in their understanding of what constitutes a cluster and how to efficiently find them. Popular notions of clusters include groups with small distances between cluster members, dense areas of the data space, intervals or particular statistical distributions. Clustering can therefore be formulated as a multi-objective optimization problem. ...
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Davies–Bouldin Index
The Davies–Bouldin index (DBI), introduced by David L. Davies and Donald W. Bouldin in 1979, is a metric for evaluating clustering algorithms. This is an internal evaluation scheme, where the validation of how well the clustering has been done is made using quantities and features inherent to the dataset. This has a drawback that a good value reported by this method does not imply the best information retrieval. Preliminaries Given ''n'' dimensional points, let ''C''''i'' be a cluster of data points. Let ''X''''j'' be an ''n''-dimensional feature vector assigned to cluster ''C''''i''. : S_i = \left(\frac \sum_^ \right)^ Here A_i is the centroid of ''C''''i'' and ''T''''i'' is the size of the cluster ''i''. S_i is the ''q''th root of the ''q''th moment of the points in cluster ''i'' about the mean. If q=1 then S_i is the average distance between the feature vectors in cluster ''i'' and the centroid of the cluster. Usually the value of ''p'' is 2, which makes the dista ...
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Silhouette (clustering)
Silhouette refers to a method of interpretation and validation of consistency within clusters of data. The technique provides a succinct graphical representation of how well each object has been classified. It was proposed by Belgian statistician Peter Rousseeuw in 1987. The silhouette value is a measure of how similar an object is to its own cluster (cohesion) compared to other clusters (separation). The silhouette ranges from −1 to +1, where a high value indicates that the object is well matched to its own cluster and poorly matched to neighboring clusters. If most objects have a high value, then the clustering configuration is appropriate. If many points have a low or negative value, then the clustering configuration may have too many or too few clusters. The silhouette can be calculated with any distance metric, such as the Euclidean distance or the Manhattan distance. Definition Assume the data have been clustered via any technique, such as k-medoids or k-means, ...
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Manhattan Distance
A taxicab geometry or a Manhattan geometry is a geometry whose usual distance function or Metric (mathematics), metric of Euclidean geometry is replaced by a new metric in which the distance between two points is the sum of the absolute differences of their Cartesian coordinates. The taxicab metric is also known as rectilinear distance, ''L''1 distance, ''L''1 distance or \ell_1 norm (see Lp space, ''Lp'' space), Snake (video game), snake distance, city block distance, Manhattan distance or Manhattan length. The latter names refer to the rectilinear street layout on the island of Manhattan, where the shortest path a taxi travels between two points is the sum of the absolute values of distances that it travels on avenues and on streets. The geometry has been used in regression analysis since the 18th century, and is often referred to as Lasso (statistics), LASSO. The geometric interpretation dates to non-Euclidean geometry of the 19th century and is due to Hermann Minkowski. In \mat ...
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Euclidean Distance
In mathematics, the Euclidean distance between two points in Euclidean space is the length of a line segment between the two points. It can be calculated from the Cartesian coordinates of the points using the Pythagorean theorem, therefore occasionally being called the Pythagorean distance. These names come from the ancient Greek mathematicians Euclid and Pythagoras, although Euclid did not represent distances as numbers, and the connection from the Pythagorean theorem to distance calculation was not made until the 18th century. The distance between two objects that are not points is usually defined to be the smallest distance among pairs of points from the two objects. Formulas are known for computing distances between different types of objects, such as the distance from a point to a line. In advanced mathematics, the concept of distance has been generalized to abstract metric spaces, and other distances than Euclidean have been studied. In some applications in statistic ...
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MATLAB
MATLAB (an abbreviation of "MATrix LABoratory") is a proprietary multi-paradigm programming language and numeric computing environment developed by MathWorks. MATLAB allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages. Although MATLAB is intended primarily for numeric computing, an optional toolbox uses the MuPAD symbolic engine allowing access to symbolic computing abilities. An additional package, Simulink, adds graphical multi-domain simulation and model-based design for dynamic and embedded systems. As of 2020, MATLAB has more than 4 million users worldwide. They come from various backgrounds of engineering, science, and economics. History Origins MATLAB was invented by mathematician and computer programmer Cleve Moler. The idea for MATLAB was based on his 1960s PhD thesis. Moler became a math professor at the University of New Mexico and starte ...
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R (programming Language)
R is a programming language for statistical computing and graphics supported by the R Core Team and the R Foundation for Statistical Computing. Created by statisticians Ross Ihaka and Robert Gentleman, R is used among data miners, bioinformaticians and statisticians for data analysis and developing statistical software. Users have created packages to augment the functions of the R language. According to user surveys and studies of scholarly literature databases, R is one of the most commonly used programming languages used in data mining. R ranks 12th in the TIOBE index, a measure of programming language popularity, in which the language peaked in 8th place in August 2020. The official R software environment is an open-source free software environment within the GNU package, available under the GNU General Public License. It is written primarily in C, Fortran, and R itself (partially self-hosting). Precompiled executables are provided for various operating systems. R ...
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Apache Mahout
Apache Mahout is a project of the Apache Software Foundation to produce free implementations of distributed or otherwise scalable machine learning algorithms focused primarily on linear algebra. In the past, many of the implementations use the Apache Hadoop platform, however today it is primarily focused on Apache Spark. Mahout also provides Java/Scala libraries for common math operations (focused on linear algebra and statistics) and primitive Java collections. Mahout is a work in progress; a number of algorithms have been implemented. Features Samsara Apache Mahout-Samsara refers to a Scala domain specific language (DSL) that allows users to use R-Like syntax as opposed to traditional Scala-like syntax. This allows user to express algorithms concisely and clearly. val G = B %*% B.t - C - C.t + (ksi dot ksi) * (s_q cross s_q) Backend Agnostic Apache Mahout's code abstracts the domain specific language from the engine where the code is run. While active development is d ...
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