|
Discovery Net
Discovery Net is one of the earliest examples of a scientific workflow system allowing users to coordinate the execution of remote services based on Web service and Grid Services (OGSA and Open Grid Services Architecture) standards. The system was designed and implemented at Imperial College London as part of the Discovery Net pilot project funded by the UK e-Science Programme (). Many of the concepts pioneered by Discovery Net have been later incorporated into a variety of other scientific workflow systems. History The Discovery Net system was developed as part of the Discovery Net pilot project (2001–2005), a £2m research project funded by the EPSRC under the UK e-Science Programme (). The research on the project was conducted at Imperial College London as a collaboration between the Departments of Computing, Physics, Biochemistry and Earth Science & Engineering. Being a single institution project, the project was unique compared to the other 10 pilot projects funded by the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Scientific Workflow System
A scientific workflow system is a specialized form of a workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or workflow, in a scientific application. Scientific workflow systems are generally developed for use by scientists from different disciplines like astronomy, earth science, and bioinformatics. All such systems are based on an abstract representation of how a computation proceeds in the form of a directed graph, where each node represents a task to be executed and edges represent either data flow or execution dependencies between different tasks. Each system typically provides a visual front-end, allowing the user to build and modify complex applications with little or no programming expertise. Applications Distributed scientists can collaborate on conducting large scale scientific experiments and knowledge discovery applications using distributed systems of computing resources, data sets, and devices. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
FASTA
FASTA is a DNA and protein sequence alignment software package first described by David J. Lipman and William R. Pearson in 1985. Its legacy is the FASTA format which is now ubiquitous in bioinformatics. History The original FASTA program was designed for protein sequence similarity searching. Because of the exponentially expanding genetic information and the limited speed and memory of computers in the 1980s heuristic methods were introduced aligning a query sequence to entire data-bases. FASTA, published in 1987, added the ability to do DNA:DNA searches, translated protein:DNA searches, and also provided a more sophisticated shuffling program for evaluating statistical significance. There are several programs in this package that allow the alignment of protein sequences and DNA sequences. Nowadays, increased computer performance makes it possible to perform searches for local alignment detection in a database using the Smith–Waterman algorithm. FASTA is pronounced "f ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Grid Computing Projects
Grid, The Grid, or GRID may refer to: Space partitioning * Regular grid, a tessellation of space with translational symmetry, typically formed from parallelograms or higher-dimensional analogs ** Grid graph, a graph structure with nodes connected in a regular grid ** Square grid, a grid of squares ** Triangular grid, a grid of triangles ** Hexagonal grid, a grid of hexagons ** Unstructured grid, a tessellation of a space by simple shapes such as triangles or tetrahedra in an irregular pattern * Grid reference system, a coordinate system relative to a particular map projection * Grid (spatial index), a discretization of a geometric domain into a set of contiguous cells, used to organize information ** Discrete global grid (DGG), a grid that covers the entire Earth's surface * Grid (graphic design) (or typographic grid), organized lines for guiding graphic design * Grid plan, a city design with streets running at right angles * Grid paper, paper with a regular grid print ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Engineering And Physical Sciences Research Council
The Engineering and Physical Sciences Research Council (EPSRC) is a British UK Research Councils, Research Council that provides government funding for grants to undertake research and postgraduate degrees in engineering and the physical sciences, mainly to universities in the United Kingdom. EPSRC research areas include mathematics, physics, chemistry, artificial intelligence and computer science, but exclude particle physics, nuclear physics, space science and astronomy (which fall under the remit of the Science and Technology Facilities Council). Since 2018 it has been part of UK Research and Innovation, which is funded through the Department for Business, Energy and Industrial Strategy. History EPSRC was created in 1994. At first part of the Science and Engineering Research Council (SERC), in 2018 it was one of nine organisations brought together to form UK Research and Innovation (UKRI). Its head office is in Swindon, Wiltshire in the same building (Polaris House) that hou ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
E-Science
E-Science or eScience is computationally intensive science that is carried out in highly distributed network environments, or science that uses immense data sets that require grid computing; the term sometimes includes technologies that enable distributed collaboration, such as the Access Grid. The term was created by John Taylor, the Director General of the United Kingdom's Office of Science and Technology in 1999 and was used to describe a large funding initiative starting in November 2000. E-science has been more broadly interpreted since then, as "the application of computer technology to the undertaking of modern scientific investigation, including the preparation, experimentation, data collection, results dissemination, and long-term storage and accessibility of all materials generated through the scientific process. These may include data modeling and analysis, electronic/digitized laboratory notebooks, raw and fitted data sets, manuscript production and draft versions, pre ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Academic Computer Network Organizations
An academy (Attic Greek: Ἀκαδήμεια; Koine Greek Ἀκαδημία) is an institution of tertiary education. The name traces back to Plato's school of philosophy, founded approximately 386 BC at Akademia, a sanctuary of Athena, the goddess of wisdom and skill, north of Athens, Greece. The Royal Spanish Academy defines academy as scientific, literary or artistic society established with public authority and as a teaching establishment, public or private, of a professional, artistic, technical or simply practical nature. Etymology The word comes from the ''Academy'' in ancient Greece, which derives from the Athenian hero, ''Akademos''. Outside the city walls of Athens, the gymnasium was made famous by Plato as a center of learning. The sacred space, dedicated to the goddess of wisdom, Athena, had formerly been an olive grove, hence the expression "the groves of Academe". In these gardens, the philosopher Plato conversed with followers. Plato developed his sessions ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Francesca Toni
Francesca Toni is an Italian computer scientist who works at Imperial College London in the UK as JP Morgan/Royal Academy of Engineering Research Chair in Argumentation for Interactive Explainable AI, Professor in Computational Logic in the Department of Computing, and head of the Computational Logic and Argumentation Group. Her research interests include explainable artificial intelligence, computational logic, argumentation theory, and applications in public health. Education and career Toni is originally from "a small town in Tuscany." Initially intending to go into mathematics, she switched to computer science in her last year of high school. She has a laurea (the Italian equivalent of a master's degree) from the University of Pisa, earned in 1990, and completed a doctorate from Imperial College London in 1995. Her dissertation, on abductive logic programming, was supervised by Robert Kowalski Robert Anthony Kowalski (born 15 May 1941) is an American-British logician and ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Apache Taverna
Apache Taverna was an open source software tool for designing and executing workflows, initially created by the myGrid project under the name ''Taverna Workbench'', then a project under the Apache Software Foundation incubator. Taverna allowed users to integrate many different software components, including web services, such as those provided by the National Center for Biotechnology Information, the European Bioinformatics Institute, the DNA Data Bank of Japan (DDBJ), SoapLab, BioMOBY and EMBOSS. The set of available services was not finite and users could import new service descriptions into the Taverna Workbench. Taverna Workbench provided a desktop authoring environment and enactment engine for scientific workflows. The Taverna workflow engine was also available separately, as a Java API, command line tool or as a server. Taverna was used by users in many domains, such as bioinformatics, cheminformatics, medicine, astronomy, social science, music, and digital preservation. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BBSRC
Biotechnology and Biological Sciences Research Council (BBSRC), part of UK Research and Innovation, is a non-departmental public body (NDPB), and is the largest UK public funder of non-medical bioscience. It predominantly funds scientific research institutes and university research departments in the UK. Purpose Receiving its funding through the science budget of the Department for Science, Innovation and Technology, BBSRC's mission is to "promote and support, by any means, high-quality basic, strategic and applied research and related postgraduate training relating to the understanding and exploitation of biological systems". Structure BBSRC's head office is at Polaris House in Swindon - the same building as the other councils of UK Research and Innovation, AHRC EPSRC, ESRC, Innovate UK, MRC, NERC, Research England and STFC, as well as the UKSA. Funded by Government, BBSRC invested over £498 million in bioscience in 2017–18. BBSRC also manages the joint Resear ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Wellcome Trust
The Wellcome Trust is a charitable foundation focused on health research based in London, United Kingdom. It was established in 1936 with legacies from the pharmaceutical magnate Henry Wellcome (founder of Burroughs Wellcome, one of the predecessors of GSK plc) to fund research to improve human and animal health. The aim of the Trust is to "support science to solve the urgent health challenges facing everyone." It had a financial endowment of £29.1 billion in 2020, making it the fourth wealthiest charitable foundation in the world. In 2012, the Wellcome Trust was described by the ''Financial Times'' as the United Kingdom's largest provider of non-governmental funding for scientific research, and one of the largest providers in the world. According to their annual report, the Wellcome Trust spent GBP £1.1 billion on charitable activities across their 2019/2020 financial year. According to the OECD, the Wellcome Trust's financing for 2019 development increased by 2 ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioinformatics Workflow Management Systems
A scientific workflow system is a specialized form of a workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or workflow, in a scientific application. Scientific workflow systems are generally developed for use by scientists from different disciplines like astronomy, earth science, and bioinformatics. All such systems are based on an abstract representation of how a computation proceeds in the form of a directed graph, where each node represents a task to be executed and edges represent either data flow or execution dependencies between different tasks. Each system typically provides a visual front-end, allowing the user to build and modify complex applications with little or no programming expertise. Applications Distributed scientists can collaborate on conducting large scale scientific experiments and knowledge discovery applications using distributed systems of computing resources, data sets, and devices. S ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Simplified Molecular Input Line Entry Specification
The Simplified Molecular Input Line Entry System (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules. The original SMILES specification was initiated in the 1980s. It has since been modified and extended. In 2007, an open standard called OpenSMILES was developed in the open source chemistry community. History The original SMILES specification was initiated by David Weininger at the USEPA Mid-Continent Ecology Division Laboratory in Duluth in the 1980s. Acknowledged for their parts in the early development were "Gilman Veith and Rose Russo (USEPA) and Albert Leo and Corwin Hansch (Pomona College) for supporting the work, and Arthur Weininger (Pomona; Daylight CIS) and Jeremy Scofield (Cedar River Software, Renton, WA) for assistance in progra ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
