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BioSLAX
BioSLAX is a Live CD/Live DVD/Live USB comprising a suite of more than 300 bioinformatics tools and application suites. It has been released by the Bioinformatics Resource Unit of the Life Sciences Institute (LSI), National University of Singapore (NUS) and is bootable from any PC that allows a CD/DVD or USB boot option and runs the compressed Slackware flavour of the Linux Operating System (OS), also known as Slax. Slax was created by Tomáš Matějíček in the Czech Republic using the Linux Live Scripts which he also developed. The BioSLAX derivative was created by Mark De Silva, Lim Kuan Siong and Tan Tin Wee. BioSLAX was first released to the NUS Life Science Curriculum in April 2006. History In January 2003, APBioNet received a research grant from the Pan Asia Networking (PAN) Programme of IDRC (Canada) to build an APBioBox of commonly used bioinformatics applications and packages with grid-computing software as part of its effort to build an APBioGrid. The platform chosen ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Secure Shell
The Secure Shell Protocol (SSH) is a cryptographic network protocol for operating network services securely over an unsecured network. Its most notable applications are remote login and command-line execution. SSH applications are based on a client–server architecture, connecting an SSH client instance with an SSH server. SSH operates as a layered protocol suite comprising three principal hierarchical components: the ''transport layer'' provides server authentication, confidentiality, and integrity; the ''user authentication protocol'' validates the user to the server; and the ''connection protocol'' multiplexes the encrypted tunnel into multiple logical communication channels. SSH was designed on Unix-like operating systems, as a replacement for Telnet and for unsecured remote Unix shell protocols, such as the Berkeley Remote Shell (rsh) and the related rlogin and rexec protocols, which all use insecure, plaintext transmission of authentication tokens. SSH was first de ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
GFTP
gFTP is a free and open-source multithreaded File Transfer Protocol client program. It is most used on Unix-like systems such as Linux, macOS, and Sony PlayStation 3. It includes both a graphical user interface (GUI), which utilizes the GTK+ graphical toolkit, and a command-line interface. gFTP is released under the terms of the GPL and has been translated into 45 languages. There is support for the FTP, FTPS (control connection only), HTTP, HTTPS, SFTP, and FSP protocols as well as FTP and HTTP proxy server support and FXP file transfers (transferring files between two remote servers via FTP). The GUI uses a double-paned layout, with the local filesystem in the left pane and the remote filesystem in the right pane. Below there is a transfer queue that shows the real-time status of each queued or active file transfer. At the bottom is a message log, which displays the text commands and responses between gFTP and the remote server. Sites are stored in a hierarchical collectio ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Mozilla Thunderbird
Mozilla Thunderbird is a free and open-source cross-platform email client, personal information manager, news client, RSS and chat client developed by the Mozilla Foundation and operated by subsidiary MZLA Technologies Corporation. The project strategy was originally modeled after that of Mozilla's Firefox web browser. Features Thunderbird is an email, newsgroup, news feed, and chat (XMPP/IRC) client with personal information manager (PIM) functionality, inbuilt since version 78.0 and previously available from the Lightning calendar extension. Additional features are available from extensions. Message management Thunderbird manages multiple email, newsgroup, and news feed accounts and supports multiple identities within accounts. Features such as quick search, saved search folders ("virtual folders"), advanced message filtering, message grouping, and tags help manage and find messages. On Linux-based systems, system mail (movemail) accounts were supported until version 91.0. Th ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Mozilla Firefox
Mozilla Firefox, or simply Firefox, is a free and open-source web browser developed by the Mozilla Foundation and its subsidiary, the Mozilla Corporation. It uses the Gecko rendering engine to display web pages, which implements current and anticipated web standards. In November 2017, Firefox began incorporating new technology under the code name "Quantum" to promote parallelism and a more intuitive user interface. Firefox is available for Windows 7 and later versions, macOS, and Linux. Its unofficial ports are available for various Unix and Unix-like operating systems, including FreeBSD, OpenBSD, NetBSD, illumos, and Solaris Unix. It is also available for Android and iOS. However, as with all other iOS web browsers, the iOS version uses the WebKit layout engine instead of Gecko due to platform requirements. An optimized version is also available on the Amazon Fire TV as one of the two main browsers available with Amazon's Silk Browser. Firefox was created in 2002 under t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
KPDF
The KDE Gear (also known as the KDE Applications Bundle or KDE Applications) is a set of applications and supporting libraries that are developed by the KDE community, primarily used on Linux-based operating systems but mostly multiplatform, and released on a common release schedule. The bundle is composed of over 100 applications. Examples of prominent applications in the bundle include the file manager Dolphin, document viewer Okular, text editor Kate, archiving tool Ark and terminal emulator Konsole. Previously the KDE Applications Bundle was part of the KDE Software Compilation. Extragear Software that is not part of the official KDE Applications bundle can be found in the "Extragear" section. They release on their own schedule and feature their own versioning numbers. There are many standalone applications like KTorrent, Krita or Amarok that are mostly designed to be portable between operating systems and deployable independent of a particular workspace or desktop env ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
OpenOffice
OpenOffice or open office may refer to: Computing Software * OpenOffice.org (OOo), a discontinued open-source office software suite, originally based on StarOffice * Apache OpenOffice (AOO), a derivative of OOo by the Apache Software Foundation, with contribution from IBM Lotus Symphony Programming * OpenOffice Basic (formerly known as StarOffice Basic or StarBasic or OOoBasic), a dialect of the programming language BASIC File formats * OpenDocument format (ODF), also known as ''Open Document Format for Office Applications'', a widely supported standard XML-based file format originating from OOo * OpenOffice.org XML, a file format used by early versions of OpenOffice.org * Office Open XML (OOXML), a competing file format from Microsoft Other uses * Open plan, a floor plan * Open Document Architecture (ODA), document interchange format (CCITT T.411-T.424, equivalent to ISO 8613) * OpenDoc OpenDoc is a defunct multi-platform software componentry framework standard created b ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
MySQL
MySQL () is an open-source relational database management system (RDBMS). Its name is a combination of "My", the name of co-founder Michael Widenius's daughter My, and "SQL", the acronym for Structured Query Language. A relational database organizes data into one or more data tables in which data may be related to each other; these relations help structure the data. SQL is a language programmers use to create, modify and extract data from the relational database, as well as control user access to the database. In addition to relational databases and SQL, an RDBMS like MySQL works with an operating system to implement a relational database in a computer's storage system, manages users, allows for network access and facilitates testing database integrity and creation of backups. MySQL is free and open-source software under the terms of the GNU General Public License, and is also available under a variety of proprietary licenses. MySQL was owned and sponsored by the Swedish com ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Apache 2
APACHE II ("Acute Physiology and Chronic Health Evaluation II") is a severity-of-disease classification system, one of several ICU scoring systems. It is applied within 24 hours of admission of a patient to an intensive care unit (ICU): an integer score from 0 to 71 is computed based on several measurements; higher scores correspond to more severe disease and a higher risk of death. The first APACHE model was presented by Knaus et al. in 1981. Application APACHE II was designed to measure the severity of disease for adult patients admitted to intensive care units. It has not been validated for use in children or young people aged under 16. This scoring system is used in many ways which include: # Some procedures or some medicine is only given to patients with a certain APACHE II score # APACHE II score can be used to describe the morbidity of a patient when comparing the outcome with other patients. # Predicted mortalities are averaged for groups of patients in order to speci ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BioPerl
BioPerl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. It has played an integral role in the Human Genome Project. Background BioPerl is an active open source software project supported by the Open Bioinformatics Foundation. The first set of Perl codes of BioPerl was created by Tim Hubbard and Jong Bhak at MRC Centre Cambridge, where the first genome sequencing was carried out by Fred Sanger. MRC Centre was one of the hubs and birth places of modern bioinformatics as it had a large quantity of DNA sequences and 3D protein structures. Hubbard was using the th_lib.pl Perl library, which contained many useful Perl subroutines for bioinformatics. Bhak, Hubbard's first PhD student, created jong_lib.pl. Bhak merged the two Perl subroutine libraries into Bio.pl. The name BioPerl was coined jointly by Bhak and Steven Brenner at the Centre for Protein Engineering (CPE). In 1995, Brenner organized a BioPerl session at the In ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
PERL
Perl is a family of two high-level, general-purpose, interpreted, dynamic programming languages. "Perl" refers to Perl 5, but from 2000 to 2019 it also referred to its redesigned "sister language", Perl 6, before the latter's name was officially changed to Raku in October 2019. Though Perl is not officially an acronym, there are various backronyms in use, including "Practical Extraction and Reporting Language". Perl was developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make report processing easier. Since then, it has undergone many changes and revisions. Raku, which began as a redesign of Perl 5 in 2000, eventually evolved into a separate language. Both languages continue to be developed independently by different development teams and liberally borrow ideas from each other. The Perl languages borrow features from other programming languages including C, sh, AWK, and sed; They provide text processing facilities without the arbitrary data-le ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
