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BacDive
Bac''Dive'' (the Bacterial Diversity Metadatabase) is a bacterial metadatabase that provides strain-linked information about bacterial and archaeal biodiversity. Introduction Bac''Dive'' is a resource for different kind of metadata like taxonomy, morphology, physiology, environment and molecular-biology. The majority of data is manually annotated and curated. With the release in July 2018 Bac''Dive'' offers information for 63,669 strains. The database is hosted by the Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH and is part ode.NBIthe German Network for Bioinformatics Infrastructure. Content and Features Database The July 2018 release of the database encompassed over 600 different data fields, divided into the categories "Name and taxonomic classification", "Morphology and physiology", "Culture and growth conditions," "Isolation, sampling and environmental information." "Application and interaction", "Molecular biology" and "Strain av ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BacDive Logo
Bac''Dive'' (the Bacterial Diversity Metadatabase) is a bacterial metadatabase that provides strain-linked information about bacterial and archaeal biodiversity. Introduction Bac''Dive'' is a resource for different kind of metadata like taxonomy, morphology, physiology, environment and molecular-biology. The majority of data is manually annotated and curated. With the release in July 2018 Bac''Dive'' offers information for 63,669 strains. The database is hosted by the Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH and is part ode.NBIthe German Network for Bioinformatics Infrastructure. Content and Features Database The July 2018 release of the database encompassed over 600 different data fields, divided into the categories "Name and taxonomic classification", "Morphology and physiology", "Culture and growth conditions," "Isolation, sampling and environmental information." "Application and interaction", "Molecular biology" and "Strain a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
DSMZ
The Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures GmbH (German: ''Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH''), located in Braunschweig, is a research infrastructure in the Leibniz Association. Also the DSMZ is the world's most diverse collection of bioresources (status 2021: 75,000 bioresources). These include microorganisms (including more than 32,000 bacterial strains, 690 archaeal strains, 7,000 strains of yeasts and fungi) as well as more than 840 human and animal cell cultures, over 1. 500 plant viruses, over 940 bacteriophages, and 250 plasmids (status 2021). Since 2010, the scientific director of the Leibniz Institute DSMZ has been Jörg Overmann, a microbiologist with a PhD. He holds a professorship in microbiology at the Technical University of Braunschweig. Since August 2018, he has led the institute in a dual leadership with Bettina Fischer as administrative director. History Structure N ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacterial
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic relationships ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Archaeal
Archaea ( ; singular archaeon ) is a domain of single-celled organisms. These microorganisms lack cell nuclei and are therefore prokaryotes. Archaea were initially classified as bacteria, receiving the name archaebacteria (in the Archaebacteria kingdom), but this term has fallen out of use. Archaeal cells have unique properties separating them from the other two domains, Bacteria and Eukaryota. Archaea are further divided into multiple recognized phyla. Classification is difficult because most have not been isolated in a laboratory and have been detected only by their gene sequences in environmental samples. Archaea and bacteria are generally similar in size and shape, although a few archaea have very different shapes, such as the flat, square cells of ''Haloquadratum walsbyi''. Despite this morphological similarity to bacteria, archaea possess genes and several metabolic pathways that are more closely related to those of eukaryotes, notably for the enzymes involved in ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Metadatabase
Metadatabase is a database model for (1) metadata management, (2) global query of independent databases, and (3) distributed data processing. The word ''metadatabase'' is an addition to the dictionary. Originally, metadata was only a common term referring simply to "data about data", such as tags, keywords, and markup headers. However, in this technology, the concept of metadata is extended to also include such data and knowledge representation as information models (e.g., relations, entities-relationships, and objects), application logic (e.g., production rules), and analytic models (e.g., simulation, optimization, and mathematical algorithms). In the case of analytic models, it is also referred to as a Modelbase. These classes of metadata are integrated with some modeling ontology to give rise to a stable set of meta-relations (tables of metadata). Individual models are interpreted as metadata and entered into these tables. As such, models are inserted, retrieved, updated, and del ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Comma-separated Values
A comma-separated values (CSV) file is a delimited text file that uses a comma to separate values. Each line of the file is a data record. Each record consists of one or more fields, separated by commas. The use of the comma as a field separator is the source of the name for this file format. A CSV file typically stores tabular data (numbers and text) in plain text, in which case each line will have the same number of fields. The CSV file format is not fully standardized. Separating fields with commas is the foundation, but commas in the data or embedded line breaks have to be handled specially. Some implementations disallow such content while others surround the field with quotation marks, which yet again creates the need for escaping if quotation marks are present in the data. The term "CSV" also denotes several closely-related delimiter-separated formats that use other field delimiters such as semicolons. These include tab-separated values and space-separated values. A d ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
SILVA Ribosomal RNA Database
SILVA is a ribosomal RNA database established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich, and Ribocon. Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/18S) and 400,000 large subunit In structural biology, a protein subunit is a polypeptide chain or single protein molecule that assembles (or "''coassembles''") with others to form a protein complex. Large assemblies of proteins such as viruses often use a small number of ty ... (LSU - 23S/28S) sequences. Sequences are provided as files for the ARB software environment. See also * List of biological databases#RNA databases References {{reflist, refs= Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014)An Introduction to RNA Databases ''Methods in Molecular Biology'' 1097: 107–123. {{doi, 10.1007/978-1-62703-709-9_6. [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BRENDA
Brenda is a feminine given name in the English language. Origin The overall accepted origin for the female name Brenda is the Old Nordic male name ''Brandr'' meaning both ''torch'' and ''sword'': evidently the male name Brandr took root in areas of the British Isles under Nordic dominance and through being heard as '"Brenda" was eventually adopted as a female name. The name Brenda was probably influenced by the iconic Gaelic male name Brendan: although linguistically it is unlikely that the name Brendan would yield the name Brenda as its feminine form, the name Brenda is widely considered a feminine form of the name Brendan in Ireland, Scotland, and Wales. History The British Isles Occurring in the medieval legend of Madoc - the purported son of the 12th century historical Welsh ruler Owain Gwynedd by Brenda the daughter of a Viking overlord in Ireland - the name Brenda was apparently until the 19th century confined to the Northern Isles being an evident remnant of the Northern ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
PANGAEA (data Library)
PANGAEA - Data Publisher for Earth & Environmental Science is a digital data library and a data publisher for earth system science. Data can be georeferenced in time (date/time or geological age) and space (latitude, longitude, depth/height). Scientific data are archived with related metainformation in a relational database (Sybase) through an editorial system. Data are in Open Access and are distributed through web services in standard formats on the Internet through various search engines and portals. Data set descriptions (metadata) are conform to the ISO 19115 standard and are served in various further formats (e.g. Directory Interchange Format, Dublin Core). They include a bibliographic citation and are persistently identified using Digital Object Identifiers (DOI). Identifier provision and long-term availability of data sets via library catalogs is ensured through a cooperation with the German National Library of Science and Technology (TIB). Retrieval of data sets is pro ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international organisation that focuses on making scientific data on biodiversity available via the Internet using web services. The data are provided by many institutions from around the world; GBIF's information architecture makes these data accessible and searchable through a single portal. Data available through the GBIF portal are primarily distribution data on plants, animals, fungi, and microbes for the world, and scientific names data. The mission of the GBIF is to facilitate free and open access to biodiversity data worldwide to underpin sustainable development. Priorities, with an emphasis on promoting participation and working through partners, include mobilising biodiversity data, developing protocols and standards to ensure scientific integrity and interoperability, building an informatics architecture to allow the interlinking of diverse data types from disparate sources, promoting capacity building and cat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
European Bioinformatics Institute
The European Bioinformatics Institute (EMBL-EBI) is an Intergovernmental Organization (IGO) which, as part of the European Molecular Biology Laboratory (EMBL) family, focuses on research and services in bioinformatics. It is located on the Wellcome Genome Campus in Hinxton near Cambridge, and employs over 600 full-time equivalent (FTE) staff. Institute leaders such as Rolf Apweiler, Alex Bateman, Ewan Birney, and Guy Cochrane, an adviser on the National Genomics Data Center Scientific Advisory Board, serve as part of the international research network of the BIG Data Center at the Beijing Institute of Genomics. Additionally, the EMBL-EBI hosts training programs that teach scientists the fundamentals of the work with biological data and promote the plethora of bioinformatic tools available for their research, both EMBL-EBI and non-EMBL-EBI-based. Bioinformatic services One of the roles of the EMBL-EBI is to index and maintain biological data in a set of databases, including E ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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