BDS-1
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BDS-1
Blood-depressing substance-1 (BDS-1), also known as kappa-actitoxin-Avd4a, is a polypeptide found in the venom of the snakelocks anemone ''Anemonia sulcata''. BDS-1 is a neurotoxin that modulates voltage-dependent potassium channels, in particular Kv3-family channels, as well as certain sodium channels. This polypeptide belongs to the sea anemone type 3 toxin peptide family. Etymology BDS-1 brings about a decrease in blood pressure by blocking Kv3 potassium channels. Thus, this protein is named after its antihypertensive function. Sources BDS-1 is a toxin secreted by the nematocyst of '' Anemonia sulcata'' (Mediterranean snakelocks sea anemone). Chemistry BDS-1 is a 43 amino acids long polypeptide chain, which consists of six cysteines linked by three disulfide bridges. The secondary structure of BDS-1 possesses three-stranded antiparallel β-sheets, along with one more short antiparallel β-sheet at its N-terminus. When viewed along the polypeptide strand, its structure show ...
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Snakelocks Anemone
The snakelocks anemone (''Anemonia viridis'') is a sea anemone found in the eastern Atlantic Ocean and the Mediterranean Sea. The latter population is however sometimes considered a separate species, the Mediterranean snakelocks anemone (''Anemonia sulcata''). The tentacles are usually a deep green colour with purple tips, the green colour is often attributed to the presence of symbiotic algae within the tentacles but is actually the result of the presence of Green Fluorescent Protein which is present in corals, sea anemones, and some other cnidarians. The anemone tissue contains a symbiotic algae called zooxanthellae, which is necessary for the long-term survival of the sea anemone. When the numbers of algae diminish the anemone may appear dull grey in colour. The algae need light to flourish, so Snakelocks Anemones will be found in the sunniest pools. On average the snakelock anemone is 8 cm wide. Reproduction Unlike other cnidarians, anemones (and other Anthozoa) entire ...
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Polypeptide
Peptides (, ) are short chains of amino acids linked by peptide bonds. Long chains of amino acids are called proteins. Chains of fewer than twenty amino acids are called oligopeptides, and include dipeptides, tripeptides, and tetrapeptides. A polypeptide is a longer, continuous, unbranched peptide chain. Hence, peptides fall under the broad chemical classes of biological polymers and oligomers, alongside nucleic acids, oligosaccharides, polysaccharides, and others. A polypeptide that contains more than approximately 50 amino acids is known as a protein. Proteins consist of one or more polypeptides arranged in a biologically functional way, often bound to ligands such as coenzymes and cofactors, or to another protein or other macromolecule such as DNA or RNA, or to complex macromolecular assemblies. Amino acids that have been incorporated into peptides are termed residues. A water molecule is released during formation of each amide bond.. All peptides except cyclic peptides ...
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Snakelocks Anemone
The snakelocks anemone (''Anemonia viridis'') is a sea anemone found in the eastern Atlantic Ocean and the Mediterranean Sea. The latter population is however sometimes considered a separate species, the Mediterranean snakelocks anemone (''Anemonia sulcata''). The tentacles are usually a deep green colour with purple tips, the green colour is often attributed to the presence of symbiotic algae within the tentacles but is actually the result of the presence of Green Fluorescent Protein which is present in corals, sea anemones, and some other cnidarians. The anemone tissue contains a symbiotic algae called zooxanthellae, which is necessary for the long-term survival of the sea anemone. When the numbers of algae diminish the anemone may appear dull grey in colour. The algae need light to flourish, so Snakelocks Anemones will be found in the sunniest pools. On average the snakelock anemone is 8 cm wide. Reproduction Unlike other cnidarians, anemones (and other Anthozoa) entire ...
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Potassium Channels
Potassium channels are the most widely distributed type of ion channel found in virtually all organisms. They form potassium-selective pores that span cell membranes. Potassium channels are found in most cell types and control a wide variety of cell functions. Function Potassium channels function to conduct potassium ions down their electrochemical gradient, doing so both rapidly (up to the diffusion rate of K+ ions in bulk water) and selectively (excluding, most notably, sodium despite the sub-angstrom difference in ionic radius). Biologically, these channels act to set or reset the resting potential in many cells. In excitable cells, such as neurons, the delayed counterflow of potassium ions shapes the action potential. By contributing to the regulation of the cardiac action potential duration in cardiac muscle, malfunction of potassium channels may cause life-threatening arrhythmias. Potassium channels may also be involved in maintaining vascular tone. They also regulate ce ...
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Sodium Channels
Sodium channels are integral membrane proteins that form ion channels, conducting sodium ions (Na+) through a cell's membrane. They belong to the superfamily of cation channels and can be classified according to the trigger that opens the channel for such ions, i.e. either a voltage-change ("voltage-gated", "voltage-sensitive", or "voltage-dependent" sodium channel; also called "VGSCs" or "Nav channel") or a binding of a substance (a ligand) to the channel (ligand-gated sodium channels). In excitable cells such as neurons, myocytes, and certain types of glia, sodium channels are responsible for the rising phase of action potentials. These channels go through three different states called resting, active and inactive states. Even though the resting and inactive states would not allow the ions to flow through the channels the difference exists with respect to their structural conformation. Selectivity Sodium channels are highly selective for the transport of ions across cell membr ...
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Nematocyst
A cnidocyte (also known as a cnidoblast or nematocyte) is an explosive cell containing one large secretory organelle called a cnidocyst (also known as a cnida () or nematocyst) that can deliver a sting to other organisms. The presence of this cell defines the phylum Cnidaria (corals, sea anemones, hydrae, jellyfish, etc.). Cnidae are used to capture prey and as a defense against predators. A cnidocyte fires a structure that contains a toxin within the cnidocyst; this is responsible for the stings delivered by a cnidarian. Structure and function Each cnidocyte contains an organelle called a cnida, cnidocyst, nematocyst, ptychocyst or spirocyst. This organelle consists of a bulb-shaped capsule containing a coiled hollow tubule structure attached to it. An immature cnidocyte is referred to as a cnidoblast or nematoblast. The externally oriented side of the cell has a hair-like trigger called a cnidocil, which is a mechano- and chemo-receptor. When the trigger is activated, the ...
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Anemonia Sulcata
''Anemonia sulcata'', or Mediterranean snakelocks sea anemone, is a species of sea anemone in the family Actiniidae from the Mediterranean Sea. Whether ''A. sulcata'' should be recognized as a synonym of '' A. viridis'' remains a matter of dispute. Description This sea anemone has two ecotypes; one has a basal disk up to in diameter and has fewer than 192 tentacles (usually 142 to 148); the other has a disk up to in diameter and 192 tentacles or more, up to 348. The tentacles are long, slender and tapering, arranged in six whorls round the central mouth on the oral disk. They vary in colour but are usually some shade of green, grey or light brown. A knob on the tip of each tentacle, where the stinging cells are concentrated, may be violet. Distribution and habitat This sea anemone is native to the Mediterranean Sea and the eastern Atlantic Ocean as far south as Western Sahara. It is found in the intertidal zone and the sublittoral zone, on rocky ledges, in crevices and on b ...
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Disulfide
In biochemistry, a disulfide (or disulphide in British English) refers to a functional group with the structure . The linkage is also called an SS-bond or sometimes a disulfide bridge and is usually derived by the coupling of two thiol groups. In biology, disulfide bridges formed between thiol groups in two cysteine residues are an important component of the secondary and tertiary structure of proteins. ''Persulfide'' usually refers to compounds. In inorganic chemistry disulfide usually refers to the corresponding anion (−S−S−). Organic disulfides Symmetrical disulfides are compounds of the formula . Most disulfides encountered in organo sulfur chemistry are symmetrical disulfides. Unsymmetrical disulfides (also called heterodisulfides) are compounds of the formula . They are less common in organic chemistry, but most disulfides in nature are unsymmetrical. Properties The disulfide bonds are strong, with a typical bond dissociation energy of 60 kcal/mol (251&nbs ...
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β-sheets
The beta sheet, (β-sheet) (also β-pleated sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally by at least two or three backbone hydrogen bonds, forming a generally twisted, pleated sheet. A β-strand is a stretch of polypeptide chain typically 3 to 10 amino acids long with backbone in an extended conformation. The supramolecular association of β-sheets has been implicated in the formation of the fibrils and protein aggregates observed in amyloidosis, notably Alzheimer's disease. History The first β-sheet structure was proposed by William Astbury in the 1930s. He proposed the idea of hydrogen bonding between the peptide bonds of parallel or antiparallel extended β-strands. However, Astbury did not have the necessary data on the bond geometry of the amino acids in order to build accurate models, especially since he did not then know that the peptide bond was planar. A refined version was p ...
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Anthopleura Xanthogrammica
''Anthopleura xanthogrammica'', or the giant green anemone, is a species of intertidal sea anemone of the family Actiniidae. Other common names for this anemone include green surf anemone, giant green sea anemone, green anemone, giant tidepool anemone, anemone, and rough anemone. Description The column width and height can reach a maximum of 17.5 and 30 cm, respectively. The crown of tentacles can be as wide as 25 cm in diameter, while the column, itself, tends to be widest at the base in order to offer a more stable connection to the rocks. It has a broad, flat oral disk surface and no striping, banding, or other markings. Coloration If ''A. xanthogrammica'' is exposed to proper amounts of sunlight, it can appear bright green when submerged under water. When not submerged, it appears dark green or brown. This is because the anemone tends to close up and "droop" and its now exposed column is actually dark green and slightly brown, but the hidden tentacles and ora ...
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Ion Channel Toxins
An ion () is an atom or molecule with a net electrical charge. The charge of an electron is considered to be negative by convention and this charge is equal and opposite to the charge of a proton, which is considered to be positive by convention. The net charge of an ion is not zero because its total number of electrons is unequal to its total number of protons. A cation is a positively charged ion with fewer electrons than protons while an anion is a negatively charged ion with more electrons than protons. Opposite electric charges are pulled towards one another by electrostatic force, so cations and anions attract each other and readily form ionic compounds. Ions consisting of only a single atom are termed atomic or monatomic ions, while two or more atoms form molecular ions or polyatomic ions. In the case of physical ionization in a fluid (gas or liquid), "ion pairs" are created by spontaneous molecule collisions, where each generated pair consists of a free electron and a ...
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