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Acidaminococcaceae
The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring ''Clostridia'' species (firmicute bacteria) also stain gram-negative, the proteins responsible for the unusual diderm structure of the ''Negativicutes'' may have actually been laterally acquired from Pseudomonadota (formerly Proteobacteria). Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes. Most members of this class are obligate anaerobes, and occur in habitats such as rivers, lakes, and the intestines of vertebrates. They range from spherical forms, such as ''Megasphaera'' and ''Veillonella'', to curved rods, as typified by the selenomonads. ''Selenomonas'' has a characteristic crescent shape, with flagella inserted on the concave side, while ''Sporomusa'' is similar, but non ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Acidaminococcaceae
The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring ''Clostridia'' species (firmicute bacteria) also stain gram-negative, the proteins responsible for the unusual diderm structure of the ''Negativicutes'' may have actually been laterally acquired from Pseudomonadota (formerly Proteobacteria). Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes. Most members of this class are obligate anaerobes, and occur in habitats such as rivers, lakes, and the intestines of vertebrates. They range from spherical forms, such as ''Megasphaera'' and ''Veillonella'', to curved rods, as typified by the selenomonads. ''Selenomonas'' has a characteristic crescent shape, with flagella inserted on the concave side, while ''Sporomusa'' is similar, but non ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Veillonellaceae
The Veillonellaceae are a family of the Clostridia, formerly known as Acidaminococcaceae. Bacteria in this family are grouped together mainly based on genetic studies, which place them among the Bacillota. Supporting this placement, several species are capable of forming endospores. However, they differ from most other Bacillota in having Gram-negative stains. The cell wall composition is peculiar. Members of this family are all obligate anaerobes, and occur in habitats such as rivers, lakes, and the intestines of vertebrates. They range from spherical forms, such as ''Megasphaera'' and ''Veillonella'', to curved rods, as typified by the Selenomonads. ''Selenomonas'' has a characteristic crescent-shape, with flagella inserted on the concave side, while ''Sporomusa'' is similar but non-motile. Their names refer to this distinctive morphology: ''selene'' means moon, and ''musa'' means banana. The name Selenobacteria also refers to some this group. The description of this ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Acidaminococcus
''Acidaminococcus'' is a genus in the phylum Bacillota (Bacteria), whose members are anaerobic diplococci that can use amino acids as the sole energy source for growth. Like other members of the class Negativicutes, they are gram-negative, despite being Bacillota, which are normally gram-positive. Etymology The name ''Acidaminococcus'' derives from:New Latin noun ''acidum'' (from Latin adjective ''acidus'', sour), an acid; New Latin adjective ''aminus'', amino; New Latin masculine gender noun ''coccus'' (from Greek masculine gender noun ''kokkos (κόκκος)'', grain, seed), coccus-shaped; New Latin masculine gender noun ''Acidaminococcus'', the amino acid coccus. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) See also * Bacterial taxonomy * Microbiology * ''Selenomonas'' * List of bacterial orders * List of bacteria genera This article list ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Selenomonadales
The Selenomonadales are an order of bacteria within the class Negativicutes; unlike most other members of Bacillota, they are Gram-negative. The phylogeny of this order was initially determined by 16S rRNA comparisons. More recently, molecular markers in the form of conserved signature indels (CSIs) have been found specific for all Selenomonadales species. On the basis of these markers, the Selenomonadales are inclusive of two distinct families, and are no longer the sole order within the Negativicutes. Several CSIs have also been found specific for both families, Sporomusaceae and Selenomonadceae. Samples of bacterial strains within this order have been isolated from the root canals of healthy human teeth. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) See also * List of bacterial orders * List of bacteria genera This article lists the genera of ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gram-negative Bacteria
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as ''Pseudomonas aeruginosa'', '' Chlamydia trachomatis'', and ''Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex lipopol ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Selenomonad
Members of the genus ''Selenomonas'' (motile crescent-shaped bacteria in general) are referred to trivially as selenomonads. The genus ''Selenomonas'' constitutes a group of motile crescent-shaped bacteria and includes species living in the gastrointestinal tracts of animals, in particular the ruminants. A number of smaller forms discovered with the light microscope are now in culture but many, especially the large selenomonads are not, owing to their fastidious and incompletely known growth requirements. Gram stain The family ''Veillonellaceae'' was transferred from the order ''Eubacteriales'' to the new order ''Selenomonadales'' in the new class ''Negativicutes''. Despite most of the members of the ''Bacillota'' staining positive for the Gram stain and being trivially called "low-GC Gram-positives" (''c.f.'' Bacterial phyla), members of the ''Negativicutes'' stain Gram-negative and possess a double bilayer. This transfer now appears to have been mistaken. On further examin ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Selenomonas
Members of the genus ''Selenomonas'' (motile crescent-shaped bacteria in general) are referred to trivially as selenomonads. The genus ''Selenomonas'' constitutes a group of motile crescent-shaped bacteria and includes species living in the gastrointestinal tracts of animals, in particular the ruminants. A number of smaller forms discovered with the light microscope are now in culture but many, especially the large selenomonads are not, owing to their fastidious and incompletely known growth requirements. Gram stain The family ''Veillonellaceae'' was transferred from the order ''Eubacteriales'' to the new order ''Selenomonadales'' in the new class ''Negativicutes''. Despite most of the members of the ''Bacillota'' staining positive for the Gram stain and being trivially called "low-GC Gram-positives" (''c.f.'' Bacterial phyla), members of the ''Negativicutes'' stain Gram-negative and possess a double bilayer. This transfer now appears to have been mistaken. On further examina ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to breaking up paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, creating new names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as human adjustments to the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the ''Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. See also * PhyloCode * National Center for Biotechnology Informa ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes The International Code of Nomenclature of Prokaryotes (ICNP) formerly the International Code of Nomenclature of Bacteria (ICNB) or Bacteriological Code (BC) governs the scientific names for Bacteria and Archaea.P. H. A. Sneath, 2003. A short hist .... The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacterial Spore
An endospore is a dormant, tough, and non-reproductive structure produced by some bacteria in the phylum Bacillota. The name "endospore" is suggestive of a spore or seed-like form (''endo'' means 'within'), but it is not a true spore (i.e., not an offspring). It is a stripped-down, dormant form to which the bacterium can reduce itself. Endospore formation is usually triggered by a lack of nutrients, and usually occurs in gram-positive bacteria. In endospore formation, the bacterium divides within its cell wall, and one side then engulfs the other. Endospores enable bacteria to lie dormant for extended periods, even centuries. There are many reports of spores remaining viable over 10,000 years, and revival of spores millions of years old has been claimed. There is one report of viable spores of ''Bacillus marismortui'' in salt crystals approximately 250 million years old. When the environment becomes more favorable, the endospore can reactivate itself into a vegetative state. Mos ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Conserved Signature Indels
Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers that are generally of defined size and they are flanked on both sides by conserved regions to ensure their reliability. While indels can be arbitrary inserts or deletions, CSIs are defined as only those protein indels that are present within conserved regions of the protein. The CSIs that are restricted to a particular clade or group of species, generally provide good phylogenetic markers of common evolutionary descent. Due to the rarity and highly specific nature of such changes, it is less likely that they could arise independently by either convergent or parallel evolution (i.e. homoplasy) and therefore are likely to represent synapomorphy. Other confounding factors such as differences in evolutionary rates at different sites or among ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
