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ABCD Schema
The Access to Biological Collections Data (ABCD) schema is a highly structured data exchange and access model for taxon occurrence data (specimens, observations, etc. of living organisms), i.e. primary biodiversity data. In 2006, an 'Extension For Geosciences' was added to the schema, to form the ABCDEFG Schema, and in 2010, Biodiversity Information Standards (TDWG) published a draft standard extension for DNA, called ABCDDNA. References External links *https://www.tdwg.org/standards/abcd/ *http://www.codata.org/ *https://web.archive.org/web/20070929124618/http://www.wfcc.nig.ac.jp/NEWSLETTER/newsletter36/a6.pdf the ABCD database schema The database schema is the structure of a database described in a formal language supported by the database management system (DBMS). The term "schema" refers to the organization of data as a blueprint of how the database is constructed (divide ... Bioinformatics XML-based standards {{bioinformatics-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Exchange
Data exchange is the process of taking data structured under a ''source'' schema and transforming it into a ''target'' schema, so that the target data is an accurate representation of the source data.A. Doan, A. Halevy, and Z. Ives.Principles of data integration, Morgan Kaufmann,s 2012 pp. 276 Data exchange allows data to be shared between different computer programs. It is similar to the related concept of data integration except that data is actually restructured (with possible loss of content) in data exchange. There may be no way to transform an instance given all of the constraints. Conversely, there may be numerous ways to transform the instance (possibly infinitely many), in which case a "best" choice of solutions has to be identified and justified. Single-domain data exchange In some domains, a few dozen different source and target schema (proprietary data formats) may exist. An "exchange" or "interchange format" is often developed for a single domain, and then necessar ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Access
Data access is a generic term referring to a process which has both an IT-specific meaning and other connotations involving access rights in a broader legal and/or political sense. In the former it typically refers to software and activities related to storing, retrieving, or acting on data housed in a database or other repository. Details Two fundamental types of data access exist: # sequential access (as in magnetic tape, for example) # random access (as in indexed media) Data access crucially involves authorization to access different data repositories. Data access can help distinguish the abilities of administrators and users. For example, administrators may have the ability to remove, edit and add data, while general users may not even have "read" rights if they lack access to particular information. Historically, each repository (including each different database, file system, etc.), might require the use of different methods and languages, and many of these repositorie ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Model
A data model is an abstract model that organizes elements of data and standardizes how they relate to one another and to the properties of real-world entities. For instance, a data model may specify that the data element representing a car be composed of a number of other elements which, in turn, represent the color and size of the car and define its owner. The term data model can refer to two distinct but closely related concepts. Sometimes it refers to an abstract formalization of the objects and relationships found in a particular application domain: for example the customers, products, and orders found in a manufacturing organization. At other times it refers to the set of concepts used in defining such formalizations: for example concepts such as entities, attributes, relations, or tables. So the "data model" of a banking application may be defined using the entity-relationship "data model". This article uses the term in both senses. A data model explicitly determines the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Taxon
In biology, a taxon (back-formation from ''taxonomy''; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and given a particular ranking, especially if and when it is accepted or becomes established. It is very common, however, for taxonomists to remain at odds over what belongs to a taxon and the criteria used for inclusion. If a taxon is given a formal scientific name, its use is then governed by one of the nomenclature codes specifying which scientific name is correct for a particular grouping. Initial attempts at classifying and ordering organisms (plants and animals) were set forth in Carl Linnaeus's Linnaean taxonomy, system in ''Systema Naturae'', 10th edition (1758), as well as an unpublished work by Bernard de Jussieu, Bernard and Antoine Laurent de Jussieu. The idea of a unit-based system of biological classification was first mad ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biodiversity
Biodiversity or biological diversity is the variety and variability of life on Earth. Biodiversity is a measure of variation at the genetic (''genetic variability''), species (''species diversity''), and ecosystem (''ecosystem diversity'') level. Biodiversity is not distributed evenly on Earth; it is usually greater in the tropics as a result of the warm climate and high primary productivity in the region near the equator. Tropical forest ecosystems cover less than 10% of earth's surface and contain about 90% of the world's species. Marine biodiversity is usually higher along coasts in the Western Pacific, where sea surface temperature is highest, and in the mid-latitudinal band in all oceans. There are latitudinal gradients in species diversity. Biodiversity generally tends to cluster in hotspots, and has been increasing through time, but will be likely to slow in the future as a primary result of deforestation. It encompasses the evolutionary, ecological, and cultural ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
XML Schema
An XML schema is a description of a type of Extensible Markup Language, XML document, typically expressed in terms of constraints on the structure and content of documents of that type, above and beyond the basic syntactical constraints imposed by XML itself. These constraints are generally expressed using some combination of grammatical rules governing the order of elements, Boolean predicates that the content must satisfy, data types governing the content of elements and attributes, and more specialized rules such as uniqueness quantification, uniqueness and referential integrity constraints. There are languages developed specifically to express XML schemas. The document type definition (DTD) language, which is native to the XML specification, is a schema language that is of relatively limited capability, but that also has other uses in XML aside from the expression of schemas. Two more expressive XML schema languages in widespread use are XML Schema (W3C), XML Schema (with a c ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biodiversity Information Standards (TDWG)
Biodiversity Information Standards (TDWG), originally called the Taxonomic Databases Working Group, is a non-profit scientific and educational association that works to develop open standards for the exchange of biodiversity data, facilitating biodiversity informatics. It is affiliated with the International Union of Biological Sciences. It is best known for the Darwin Core standard for exchanging biodiversity, which has been used by the Global Biodiversity Information Facility to collect millions of biological observations from museums and other organizations from around the world. History TDWG was founded in 1985 as the Taxonomic Databases Working Group; the first meeting took place on September 28–30, 1985, at the Conservatory and Botanical Garden of the City of Geneva in Switzerland. The organisation was formed as an international collaboration to promote the wider and more effective dissemination of information about biological organisms. Its name was changed to Taxonomic Da ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Database Schema
The database schema is the structure of a database described in a formal language supported by the database management system (DBMS). The term "schema" refers to the organization of data as a blueprint of how the database is constructed (divided into database tables in the case of relational databases). The formal definition of a database schema is a set of formulas (sentences) called integrity constraints imposed on a database. These integrity constraints ensure compatibility between parts of the schema. All constraints are expressible in the same language. A database can be considered a structure in realization of the database language. The states of a created conceptual schema are transformed into an explicit mapping, the database schema. This describes how real-world entities are modeled in the database. "A database schema specifies, based on the database administrator's knowledge of possible applications, the facts that can enter the database, or those of interest to the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioinformatics
Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combines biology, chemistry, physics, computer science, information engineering, mathematics and statistics to analyze and interpret the biological data. Bioinformatics has been used for '' in silico'' analyses of biological queries using computational and statistical techniques. Bioinformatics includes biological studies that use computer programming as part of their methodology, as well as specific analysis "pipelines" that are repeatedly used, particularly in the field of genomics. Common uses of bioinformatics include the identification of candidates genes and single nucleotide polymorphisms (SNPs). Often, such identification is made with the aim to better understand the genetic basis of disease, unique adaptations, desirable properties (e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
