Topic summary
Comparison of nucleic acid simulation software
This is a list of notable computer programs that are used for nucleic acids simulations.
- Min – Optimization
- MD – Molecular dynamics
- MC – Monte Carlo
- REM – Replica exchange method
- Crt – Cartesian coordinates
- Int – Internal coordinates
- Exp – Explicit water
- Imp – Implicit water
- Lig – Ligand interactions
- GPU – Hardware accelerated