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Circadian clock

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A circadian clock, or circadian oscillator, also known as one's internal alarm clock, is a biochemical oscillator that cycles with a stable phase and is synchronized with solar time. Such a clock's in vivo period is necessarily almost exactly 24 hours (the earth's current solar day). In most living organisms, internally synchronized circadian clocks make it possible for the organism to anticipate daily environmental changes corresponding with the day–night cycle and adjust its biology and behavior accordingly.

Circadian rhythmCircadian rhythmA circadian rhythm (), or circadian cycle, is a natural oscillation that repeats roughly every 24 hours. Circadian rhythms can refer to any process that originates within an organism (i.e., endogenous) and responds to the environment (is entrained by the environment). Circadian rhythms are regulated by a circadian clock whose primary function is to rhythmically co-ordinate biological processes so they occur at the correct time to maximize the fitness of an individual.Entrainment (chronobiology)Entrainment (chronobiology)In the study of chronobiology, entrainment refers to the synchronization of a biological clock to an . An example is the interaction between circadian rhythms and environmental cues, such as light and temperature. Entrainment helps organisms adapt their bodily processes according to the timing of a changing environment. For example, entrainment is manifested during travel between time zones, hence why humans experience jet lag.TOC1 (gene)Timing of CAB expression 1 is a protein that in Arabidopsis thaliana is encoded by the TOC1gene. TOC1 is also known as two-component response regulator-like APRR1. TOC1 was the first plant gene that, when mutated, yielded a circadian phenotype. It codes for the transcription factor TOC1, which affects the period of plants' circadian rhythms: built-in, malleable oscillations that repeat every 24 hours.Bacterial circadian rhythmBacterial circadian rhythmBacterial circadian rhythms, like other circadian rhythms, are endogenous "biological clocks" that have the following three characteristics: (a) in constant conditions (i.e. constant temperature and either constant light {LL} or constant darkness {DD}) they oscillate with a period that is close to, but not exactly, 24 hours in duration,(b) this "free-running" rhythm is temperature compensated, and(c) the rhythm will entrain to an appropriate environmental cycle.Until the mid-1980s, it was thought that only eukaryotic cells had circadian rhythms.FungusFungusOrganism belonging to kingdom FungiA fungus (pl.: fungi or funguses) is any member of the group of eukaryotic organisms that includes yeasts, molds, and mushrooms. These organisms are classified in the biological kingdomFungi. A characteristic that places fungus in a different kingdom from plants, bacteria, and some protists is having chitin in their cell walls.Drosophila melanogasterDrosophila melanogasterSpecies of fruit flyDrosophila melanogaster is a species of fly (an insect of the order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly", "pomace fly", or "banana fly". D. melanogaster is attracted to rotting fruit and fermenting beverages and is often found in orchards, kitchens, and pubs.DayDayA day is the timeperiod of a full rotation of the Earth with respect to the Sun. On average, this is 24 hours (86,400 seconds). As a day passes at a given location it experiences morning, afternoon, evening, and night. This daily cycle drives circadian rhythms in many organisms, which are vital to many life processes. A collection of sequential days is organized into calendars as dates, almost always into weeks, months, and years.Phase (waves)Phase (waves)In physics and mathematics, the phase (symbol φ or ϕ) of a wave or other periodic functionF{\displaystyle F} of some real variable t{\displaystyle t} (such as time) is an angle-like quantity representing the fraction of the cycle covered up to t{\displaystyle t}. It is expressed in such a scale that it varies by one full turn as the variable t{\displaystyle t} goes through each period (and F(t){\displaystyle F(t)} goes through each complete cycle).Endogeny (biology)Endogeny (biology)Endogeny, in biology, refers to the property of originating or developing from within an organism, tissue, or cell. For example, endogenous substances, and endogenous processes are those that originate within a living system (e.g. an organism or a cell). For instance, estradiol is an endogenous estrogenhormone produced within the body, whereas ethinylestradiol is an exogenous synthetic estrogen, commonly used in birth control pills.ArchaeaArchaeaDomain of organismsExcluded(but cladistically included)EukaryotaSynonyms"Archaebacteria" Woese & Fox 1977"Archaeobacteria" Murray 1988"Mendocutes" Gibbons & Murray 1978"Mendosicutes" Murray 1984"Metabacteria" Hori and Osawa 1979"Neomura" Cavalier-Smith 2002"Archaebiota" Luketa 2012"Arkarya" Forterre 2015Archaea ( ) is a domain of organisms.VertebrateVertebrateSubphylum of chordatesVertebrates (), also called craniates, are animals with a vertebral column and a cranium. The vertebral column surrounds and protects the spinal cord, while the cranium protects the brain. The vertebrates make up the subphylumVertebrata ( ) with some 65,000 species, by far the largest ranked grouping in the phylumChordata. The vertebrates include mammals, birds, amphibians, and various classes of fishes and reptiles.Solar timeSolar timeSolar time is a calculation of the passage of time based on the position of the Sun in the sky. The fundamental unit of solar time is the day, based on the synodic rotation period. Traditionally, there are three types of time reckoning based on astronomical observations: apparent solar time and mean solar time (discussed in this article), and sidereal time, which is based on the apparent motions of stars other than the Sun.Nobel Prize in Physiology or MedicineNobel Prize in Physiology or MedicineThe Nobel Prize in Physiology or Medicine is awarded yearly by the Nobel Assembly at the Karolinska Institute for outstanding discoveries in physiology or medicine. It is one of the five Nobel Prizes prizes that, in accordance with Alfred Nobel's 1895 will, are awarded "to those who, during the preceding year, have conferred the greatest benefit to humankind". Nobel Prizes are awarded in the fields of Physics, Medicine or Physiology, Chemistry, Literature, and Peace.

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