In
histology
Histology,
also known as microscopic anatomy or microanatomy, is the branch of biology that studies the microscopic anatomy of biological tissue (biology), tissues. Histology is the microscopic counterpart to gross anatomy, which looks at large ...
, an intestinal gland (also
crypt
A crypt (from Greek κρύπτη (kryptē) ''wikt:crypta#Latin, crypta'' "Burial vault (tomb), vault") is a stone chamber beneath the floor of a church or other building. It typically contains coffins, Sarcophagus, sarcophagi, or Relic, religiou ...
of
Lieberkühn and intestinal crypt) is a
gland
A gland is a Cell (biology), cell or an Organ (biology), organ in an animal's body that produces and secretes different substances that the organism needs, either into the bloodstream or into a body cavity or outer surface. A gland may also funct ...
found in between
villi in the
intestinal epithelial lining of the
small intestine
The small intestine or small bowel is an organ (anatomy), organ in the human gastrointestinal tract, gastrointestinal tract where most of the #Absorption, absorption of nutrients from food takes place. It lies between the stomach and large intes ...
and
large intestine
The large intestine, also known as the large bowel, is the last part of the gastrointestinal tract and of the Digestion, digestive system in tetrapods. Water is absorbed here and the remaining waste material is stored in the rectum as feces befor ...
(or colon). The glands and intestinal villi are covered by
epithelium
Epithelium or epithelial tissue is a thin, continuous, protective layer of cells with little extracellular matrix. An example is the epidermis, the outermost layer of the skin. Epithelial ( mesothelial) tissues line the outer surfaces of man ...
, which contains multiple types of
cells:
enterocytes (absorbing water and electrolytes),
goblet cells (secreting mucus),
enteroendocrine cells (secreting hormones), cup cells,
myofibroblast,
tuft cells, and at the base of the gland,
Paneth cells (secreting anti-microbial peptides) and
stem cells.
Structure
Intestinal glands are found in the
epithelia of the
small intestine
The small intestine or small bowel is an organ (anatomy), organ in the human gastrointestinal tract, gastrointestinal tract where most of the #Absorption, absorption of nutrients from food takes place. It lies between the stomach and large intes ...
, namely the
duodenum
The duodenum is the first section of the small intestine in most vertebrates, including mammals, reptiles, and birds. In mammals, it may be the principal site for iron absorption.
The duodenum precedes the jejunum and ileum and is the shortest p ...
,
jejunum
The jejunum is the second part of the small intestine in humans and most higher vertebrates, including mammals, reptiles, and birds. Its lining is specialized for the absorption by enterocytes of small nutrient molecules which have been pr ...
, and
ileum
The ileum () is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may ...
, and in the
large intestine
The large intestine, also known as the large bowel, is the last part of the gastrointestinal tract and of the Digestion, digestive system in tetrapods. Water is absorbed here and the remaining waste material is stored in the rectum as feces befor ...
(colon), where they are sometimes called ''colonic crypts''. Intestinal glands of the small intestine contain a base of replicating
stem cells,
Paneth cells of the
innate immune system
The innate immune system or nonspecific immune system is one of the two main immunity strategies in vertebrates (the other being the adaptive immune system). The innate immune system is an alternate defense strategy and is the dominant immune s ...
, and
goblet cell
Goblet cells are simple columnar epithelial cells that secrete gel-forming mucins, like mucin 2 in the lower gastrointestinal tract, and mucin 5AC in the respiratory tract. The goblet cells mainly use the merocrine method of secretion, secre ...
s, which produce mucus.
In the colon, crypts do not have Paneth cells.
Function
The
enterocytes in the small intestinal
mucosa contain
digestive enzymes that digest specific foods while they are being absorbed through the epithelium. These enzymes include
peptidase,
sucrase,
maltase,
lactase and intestinal
lipase. This is in contrast to the
gastric glands of the
stomach
The stomach is a muscular, hollow organ in the upper gastrointestinal tract of Human, humans and many other animals, including several invertebrates. The Ancient Greek name for the stomach is ''gaster'' which is used as ''gastric'' in medical t ...
where
chief cells secrete
pepsinogen.
Also, new epithelium is formed here, which is important because the cells at this site are continuously worn away by the passing food. The basal (further from the
intestinal lumen) portion of the crypt contains multipotent
stem cells. During each
mitosis
Mitosis () is a part of the cell cycle in eukaryote, eukaryotic cells in which replicated chromosomes are separated into two new Cell nucleus, nuclei. Cell division by mitosis is an equational division which gives rise to genetically identic ...
, one of the two daughter cells remains in the crypt as a stem cell, while the other differentiates and migrates up the side of the crypt and eventually into the
villus. These stem cells can differentiate into either an absorptive (
enterocytes) or secretory (
Goblet cells,
Paneth cells,
enteroendocrine cells) lineages. Both
Wnt and
Notch signaling pathways play a large role in regulating cell proliferation and in intestinal
morphogenesis and
homeostasis
In biology, homeostasis (British English, British also homoeostasis; ) is the state of steady internal physics, physical and chemistry, chemical conditions maintained by organism, living systems. This is the condition of optimal functioning fo ...
.
Loss of proliferation control in the crypts is thought to lead to
colorectal cancer
Colorectal cancer (CRC), also known as bowel cancer, colon cancer, or rectal cancer, is the development of cancer from the Colon (anatomy), colon or rectum (parts of the large intestine). Signs and symptoms may include Lower gastrointestinal ...
.
Intestinal juice
''Intestinal juice (''also called ''succus entericus'') refers to the clear to pale yellow watery secretions from the glands lining the
small intestine
The small intestine or small bowel is an organ (anatomy), organ in the human gastrointestinal tract, gastrointestinal tract where most of the #Absorption, absorption of nutrients from food takes place. It lies between the stomach and large intes ...
walls. The
Brunner's glands
Brunner's glands (or duodenal glands) are compound tubuloalveolar submucosal glands found in that portion of the duodenum proximal to the hepatopancreatic sphincter (i.e sphincter of Oddi).
For decades, it was believed that the main function of ...
secrete large amounts of alkaline mucus in response to (1) tactile or irritating stimuli on the duodenal mucosa; (2) vagal stimulation, which increases Brunner's glands secretion concurrently with increase in stomach secretion; and (3) gastrointestinal hormones, especially
secretin.
[''Guyton and Hall Textbook of Medical Physiology'', 11th edition, p. 805]
Its function is to complete the process begun by
pancreatic juice; the
enzyme
An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different mol ...
trypsin exists in pancreatic juice in the inactive form
trypsinogen, it is activated by the intestinal
enterokinase in intestinal juice. Trypsin can then activate other protease enzymes and catalyze the reaction pro-colipase → colipase.
Colipase is necessary, along with
bile salts, to enable
lipase function.
Intestinal juice also contains
hormone
A hormone (from the Ancient Greek, Greek participle , "setting in motion") is a class of cell signaling, signaling molecules in multicellular organisms that are sent to distant organs or tissues by complex biological processes to regulate physio ...
s,
digestive enzymes,
mucus, substances to neutralize
hydrochloric acid coming from the
stomach
The stomach is a muscular, hollow organ in the upper gastrointestinal tract of Human, humans and many other animals, including several invertebrates. The Ancient Greek name for the stomach is ''gaster'' which is used as ''gastric'' in medical t ...
. Various
exopeptidase which further digests
polypeptides into
amino acid
Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the 22 α-amino acids incorporated into proteins. Only these 22 a ...
s complete the digestion of
protein
Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residue (biochemistry), residues. Proteins perform a vast array of functions within organisms, including Enzyme catalysis, catalysing metab ...
s.
Colonic crypts

The intestinal glands in the colon are often referred to as colonic crypts. The
epithelial inner surface of the colon is punctuated by invaginations, the colonic crypts. The colon crypts are shaped like microscopic thick-walled test tubes with a central hole down the length of the tube (the crypt
lumen). Four tissue sections are shown here, two (A and B) cut across the long axes of the crypts and two (C and D) cut parallel to the long axes.
In these images the cells have been
stained to show a brown-orange color if the cells produce a
mitochondrial protein called
cytochrome c oxidase subunit I
Cytochrome c oxidase I (COX1) also known as mitochondrially encoded cytochrome c oxidase I (MT-CO1) is a protein that is encoded by the ''MT-CO1'' gene in eukaryotes. The gene is also called ''COX1'', ''CO1'', or ''COI''. Cytochrome c oxidase ...
(CCOI or COX-1). The
nuclei of the cells (located at the outer edges of the cells lining the walls of the crypts) are stained blue-gray with
haematoxylin. As seen in panels C and D, crypts are about 75 to about 110 cells long. The average crypt circumference is 23 cells.
From the images, an average is shown to be about 1,725 to 2530 cells per colonic crypt. Another measure was attained giving a range of 1500 to 4900 cells per colonic crypt.
Cells are produced at the crypt base and migrate upward along the crypt axis before being shed into the colonic
lumen days later.
There are 5 to 6 stem cells at the bases of the crypts.
As estimated from the image in panel A, there are about 100 colonic crypts per square millimeter of the colonic epithelium.
The length of the human colon is, on average 160.5 cm (measured from the bottom of the cecum to the colorectal junction) with a range of 80 cm to 313 cm.
The average inner circumference of the colon is 6.2 cm.
Thus, the inner surface epithelial area of the human colon has an area, on average, of about 995 cm
2, which includes 9,950,000 (close to 10 million) crypts.
In the four tissue sections shown here, many of the intestinal glands have cells with a
mitochondrial DNA
Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
mutation in the CCOI gene and appear mostly white, with their main color being the blue-gray staining of the nuclei. As seen in panel B, a portion of the stem cells of three crypts appear to have a mutation in CCOI, so that 40% to 50% of the cells arising from those stem cells form a white segment in the cross cut area.
Overall, the percentage of crypts deficient for CCOI is less than 1% before age 40, but then increases linearly with age.
Colonic crypts deficient for CCOI reaches, on average, 18% in women and 23% in men, by 80–84 years of age.
Crypts of the colon can reproduce by fission, as seen in panel C, where a crypt is dividing to form two crypts, and in panel B where at least one crypt appears to be fissioning. Most crypts deficient in CCOI are in clusters of crypts (clones of crypts) with two or more CCOI-deficient crypts adjacent to each other (see panel D).
Clinical significance
Crypt
inflammation
Inflammation (from ) is part of the biological response of body tissues to harmful stimuli, such as pathogens, damaged cells, or irritants. The five cardinal signs are heat, pain, redness, swelling, and loss of function (Latin ''calor'', '' ...
is known as ''
cryptitis'' and characterized by the presence of
neutrophils between the
enterocytes. A severe cryptitis may lead to a crypt
abscess.
Pathologic processes that lead to Crohn's disease, i.e. progressive intestinal crypt destruction, are associated with branching of the crypts.
Causes of crypt branching include:
*
inflammatory bowel disease (e.g.
ulcerative colitis
Ulcerative colitis (UC) is one of the two types of inflammatory bowel disease (IBD), with the other type being Crohn's disease. It is a long-term condition that results in inflammation and ulcers of the colon and rectum. The primary sympto ...
,
Crohn's disease
Crohn's disease is a type of inflammatory bowel disease (IBD) that may affect any segment of the gastrointestinal tract. Symptoms often include abdominal pain, diarrhea, fever, abdominal distension, and weight loss. Complications outside of the ...
),
* persistent infectious colitides, and
*
ischemic colitis.
File:Crypt branching high mag.jpg, Micrograph
A micrograph is an image, captured photographically or digitally, taken through a microscope or similar device to show a magnify, magnified image of an object. This is opposed to a macrograph or photomacrograph, an image which is also taken ...
showing intestinal crypt branching, a histopathological finding of chronic colitides. H&E stain.
File:Cryptitis high mag.jpg, Micrograph
A micrograph is an image, captured photographically or digitally, taken through a microscope or similar device to show a magnify, magnified image of an object. This is opposed to a macrograph or photomacrograph, an image which is also taken ...
showing crypt inflammation. H&E stain.
File:Histopathology of a crypt abscess.jpg, Crypt abscess. H&E stain.
Research
Intestinal glands contain adult stem cells referred to as
intestinal stem cells.
These cells have been used in the field of stem biology to further understand
stem cell niches,
and to generate intestinal
organoids.
History
The crypts of Lieberkühn are named after the eighteenth-century German anatomist
Johann Nathanael Lieberkühn.
References
External links
Illustration at trinity.edu
Illustration at uokhsc.edu*
{{Authority control
Digestive system