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Phylodynamics
Viral phylodynamics is the study of how epidemiological, immunological, and evolutionary processes act and potentially interact to shape viral phylogenies. Since the term was coined in 2004, research on viral phylodynamics has focused on transmission dynamics in an effort to shed light on how these dynamics impact viral genetic variation. Transmission dynamics can be considered at the level of cells within an infected host, individual hosts within a population, or entire populations of hosts. Many viruses, especially RNA viruses, rapidly accumulate genetic variation because of short generation times and high mutation rates. Patterns of viral genetic variation are therefore heavily influenced by how quickly transmission occurs and by which entities transmit to one another. Patterns of viral genetic variation will also be affected by selection acting on viral phenotypes. Although viruses can differ with respect to many phenotypes, phylodynamic studies have to date tended to focus on ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Epidemiology
Epidemiology is the study and analysis of the distribution (who, when, and where), patterns and Risk factor (epidemiology), determinants of health and disease conditions in a defined population, and application of this knowledge to prevent diseases. It is a cornerstone of public health, and shapes policy decisions and evidence-based practice by identifying Risk factor (epidemiology), risk factors for disease and targets for preventive healthcare. Epidemiologists help with study design, collection, and statistical analysis of data, amend interpretation and dissemination of results (including peer review and occasional systematic review). Epidemiology has helped develop methodology used in clinical research, public health studies, and, to a lesser extent, basic research in the biological sciences. Major areas of epidemiological study include disease causation, transmission (medicine), transmission, outbreak investigation, disease surveillance, environmental epidemiology, forensic ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Methods
Method (, methodos, from μετά/meta "in pursuit or quest of" + ὁδός/hodos "a method, system; a way or manner" of doing, saying, etc.), literally means a pursuit of knowledge, investigation, mode of prosecuting such inquiry, or system. In recent centuries it more often means a prescribed process for completing a task. It may refer to: *Scientific method, a series of steps, or collection of methods, taken to acquire knowledge *Method (computer programming), a piece of code associated with a class or object to perform a task *Method (patent), under patent law, a protected series of steps or acts *Methodism, a Christian religious movement *Methodology, comparison or study and critique of individual methods that are used in a given discipline or field of inquiry *''Discourse on the Method'', a philosophical and mathematical treatise by René Descartes * ''Methods'' (journal), a scientific journal covering research on techniques in the experimental biological and medical sciences ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Hemagglutinin (influenza)
Influenza hemagglutinin (HA) or haemagglutinin#Notes, [p] (British English) is a homotrimeric glycoprotein found on the surface of influenza viruses and is integral to its infectivity. Hemagglutinin is a class I fusion protein, having multifunctional activity as both an attachment factor and membrane fusion protein. Therefore, HA is responsible for binding influenza viruses to sialic acid on the Cell membrane, surface of target cells, such as cells in the Respiratory tract, upper respiratory tract or erythrocytes, resulting in the Receptor-mediated endocytosis, internalization of the virus. Additionally, HA is responsible for the fusion of the viral envelope with the late endosome, endosomal membrane once exposed to low pH (5.0–5.5). The name "hemagglutinin" comes from the protein's ability to cause red blood cells (i.e., erythrocytes) to clump together (i.e., Agglutination (biology), agglutinate) ''in vitro''. Subtypes Hemagglutinin (HA) in influenza A virus (IAV) has at lea ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Influenza A Virus Subtype H3N2
Influenza A virus subtype H3N2 (A/H3N2) is a subtype of influenza A virus (IAV). Some human-adapted Strain (biology), strains of A/H3N2 are Endemic (epidemiology), endemic in humans and are one cause of seasonal influenza (flu). Other strains of H1N1 are endemic in pigs (swine influenza) and in birds (avian influenza). Subtypes of IAV are defined by the combination of the Antigen, antigenic H and N proteins in the viral envelope; for example, "Influenza A virus subtype H1N1, H1N1" designates an IAV subtype that has a type-1 hemagglutinin (H) protein and a type-1 neuraminidase (N) protein. All subtypes of IAV share a Sense (molecular biology), negative-sense, segmented RNA virus, RNA genome. Under rare circumstances, one strain of the virus can acquire genetic material through Reassortment, genetic reassortment from a different strain and thus evolve to acquire new characteristics, enabling it to evade host immunity and occasionally to jump from one species of host to another. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Influenza
Influenza, commonly known as the flu, is an infectious disease caused by influenza viruses. Symptoms range from mild to severe and often include fever, runny nose, sore throat, muscle pain, headache, coughing, and fatigue. These symptoms begin one to four (typically two) days after exposure to the virus and last for about two to eight days. Diarrhea and vomiting can occur, particularly in children. Influenza may progress to pneumonia from the virus or a subsequent bacterial infection. Other complications include acute respiratory distress syndrome, meningitis, encephalitis, and worsening of pre-existing health problems such as asthma and cardiovascular disease. There are four types of influenza virus: types A, B, C, and D. Aquatic birds are the primary source of influenza A virus (IAV), which is also widespread in various mammals, including humans and pigs. Influenza B virus (IBV) and influenza C virus (ICV) primarily infect humans, and influenza D virus (IDV) i ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Directional Selection
In population genetics, directional selection is a type of natural selection in which one extreme phenotype is favored over both the other extreme and moderate phenotypes. This genetic selection causes the allele frequency to shift toward the chosen extreme over time as allele ratios change from generation to generation. The advantageous extreme allele will increase in frequency among the population as a consequence of survival and reproduction differences among the different present phenotypes in the population. The allele fluctuations as a result of directional selection can be independent of the dominance of the allele, and in some cases if the allele is recessive, it can eventually become fixed in the population. Directional selection was first identified and described by naturalist Charles Darwin in his book ''On the Origin of Species'' published in 1859. He identified it as a type of natural selection along with stabilizing selection and disruptive selection. These types ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Panmixis
Panmixia (or panmixis) means uniform random fertilization, which means individuals do not select a mate based on physical traits. A panmictic population is one where all potential parents may contribute equally to the gamete pool, and that these gametes are uniformly distributed within the gamete population (gamodeme). This assumes that there are no hybridising restrictions within the parental population: neither genetics, cytogenetics nor behavioural; and neither spatial nor temporal (see also Quantitative genetics for further discussion). True panmixia is rarely, if ever, observed in natural populations. It is a theoretical model used as a null hypothesis in population genetics. It serves as a point of comparison to understand how deviations from random mating affect allele and genotype frequencieTherefore, all gamete recombination (fertilization) is uniformly possible. Both the Wahlund effect and the Hardy Weinberg equilibrium assume that the overall population is panmictic. In ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Influenza Virus
''Orthomyxoviridae'' () is a family of negative-sense RNA viruses. It includes nine genera: '' Alphainfluenzavirus'', '' Betainfluenzavirus'', '' Gammainfluenzavirus'', '' Deltainfluenzavirus'', '' Isavirus'', '' Mykissvirus'', '' Quaranjavirus'', '' Sardinovirus'', and '' Thogotovirus''. The first four genera contain viruses that cause influenza in birds (see also avian influenza) and mammals, including humans. Isaviruses infect salmon; the thogotoviruses are arboviruses, infecting vertebrates and invertebrates (such as ticks and mosquitoes). The Quaranjaviruses are also arboviruses, infecting vertebrates (birds) and invertebrates (arthropods). The four genera of Influenza virus that infect vertebrates, which are identified by antigenic differences in their nucleoprotein and matrix protein, are as follows: * '' Alphainfluenzavirus'' infects humans, other mammals, and birds, and causes all flu pandemics * '' Betainfluenzavirus'' infects humans and seals * '' Gammainfluenz ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Rabies Virus
Rabies virus (''Lyssavirus rabies'') is a neurotropic virus that causes rabies in animals, including humans. It can cause violence, hydrophobia, and fever. Rabies transmission can also occur through the saliva of animals and less commonly through contact with human saliva. Rabies virus, like many Rhabdoviridae, rhabdoviruses, has an extremely wide host range. In the wild it has been found infecting many mammalian species, while in the laboratory it has been found that birds can be infected, as well as cell cultures from mammals, birds, reptiles and insects. Rabies is reported in more than 150 countries and on all continents except Antarctica. The main burden of disease is reported in Asia and Africa, but some cases have been reported also in Europe in the past 10 years, especially in returning travellers. Rabies virus has a cylindrical morphology and is a member of the ''Lyssavirus'' genus of the ''Rhabdoviridae'' family. These viruses are Viral envelope, enveloped and have a Ne ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Measles
Measles (probably from Middle Dutch or Middle High German ''masel(e)'', meaning "blemish, blood blister") is a highly contagious, Vaccine-preventable diseases, vaccine-preventable infectious disease caused by Measles morbillivirus, measles virus. Other names include ''morbilli'', ''rubeola'', ''9-day measles, red measles'', and ''English measles''. Symptoms usually develop 10–12 days after exposure to an infected person and last 7–10 days. Initial symptoms typically include fever, often greater than , cough, Rhinitis, runny nose, and conjunctivitis, inflamed eyes. Small white spots known as Koplik's spots, Koplik spots may form inside the mouth two or three days after the start of symptoms. A red, flat rash which usually starts on the face and then spreads to the rest of the body typically begins three to five days after the start of symptoms. Common complications include diarrhea (in 8% of cases), Otitis media, middle ear infection (7%), and pneumonia (6%). These occur i ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Population Stratification
Population structure (also called genetic structure and population stratification) is the presence of a systematic difference in allele frequencies between subpopulations. In a randomly mating (or ''panmictic'') population, allele frequencies are expected to be roughly similar between groups. However, mating tends to be non-random to some degree, causing structure to arise. For example, a barrier like a river can separate two groups of the same species and make it difficult for potential mates to cross; if a mutation occurs, over many generations it can spread and become common in one subpopulation while being completely absent in the other. Genetic variants do not necessarily cause observable changes in organisms, but can be correlated by coincidence because of population structure—a variant that is common in a population that has a high rate of disease may erroneously be thought to cause the disease. For this reason, population structure is a common confounding variable in m ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
