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Hypovirus
Hypoviruses are a family of viruses that constitute the family ''Hypoviridae''. Fungi serve as natural hosts. There are eight genera in the family. Infection reduces the virulence of its parasitic host, making it a hyperparasite useful for blight control. Taxonomy The family contains the following genera: * '' Alphahypovirus'' * '' Betahypovirus'' * '' Deltahypovirus'' * '' Epsilonhypovirus'' * '' Etahypovirus'' * '' Gammahypovirus'' * '' Thetahypovirus'' * '' Zetahypovirus'' Structure The diameter is around 50–80 nm. Genomes are linear, around 9–13kb in length. The genome has 1 or 2 open reading frames, named OrfA (not always present) and OrfB. The genome contains no structural proteins. The virus accordingly does not bud out of the cell. Both open reading frames of CHV1 contain a papain-like protease to the N-terminal that is autocatalyticly cleaved. OrfA (p69, ) cleaves into the p29 C7 protease and a nonessential p40 protein. OrfB () cleaves into a p48 C8 proteas ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Hypoviridae
Hypoviruses are a family of virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Viruses are ...es that constitute the family ''Hypoviridae''. Fungi serve as natural hosts. There are eight genera in the family. Infection reduces the virulence of its parasitic host, making it a hyperparasite useful for blight control. Taxonomy The family contains the following genera: * ''Alphahypovirus'' * ''Betahypovirus'' * ''Deltahypovirus'' * ''Epsilonhypovirus'' * ''Etahypovirus'' * ''Gammahypovirus'' * ''Thetahypovirus'' * ''Zetahypovirus'' Structure The diameter is around 50–80 nm. Genomes are linear, around 9–13kb in length. The genome has 1 or 2 open reading frames, named OrfA (not always present) and OrfB. The genome contains no structural proteins. The virus accordingly does not bud out ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
American Chestnut
The American chestnut (''Castanea dentata'') is a large, fast-growing deciduous tree of the Fagaceae, beech family native to eastern North America. As is true of all species in the genus ''Chestnut, Castanea'', the American chestnut produces Bur, burred fruit with edible nuts. The American chestnut was once common in its Appalachian Mountains, Appalachian Mountain range and was a Dominance (ecology), dominant species in the oak-chestnut forest region of its central and southern range. During the early to mid-20th century, American chestnut trees were devastated by chestnut blight, a fungal disease that came from Castanea crenata, Japanese chestnut trees that were introduced into North America from Japan. It is estimated that the blight killed between three and four billion American chestnut trees in the first half of the 20th century, beginning in 1904.Griffin, Gary"Recent advances in research and management of chestnut blight on American chestnut" Phytopathology (journal), Phyto ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Chestnut Blight
The pathogenic fungus ''Cryphonectria parasitica'' (formerly ''Endothia parasitica'') is a member of the Ascomycota (sac fungi). This necrotrophic fungus is native to East Asia and South East Asia and was introduced into Europe and North America in the early 1900s. Strains of the fungus spread more or less rapidly and caused significant tree loss in both regions. Strains of the fungus can be more or less virulent. Overview ''Cryphonectria parasitica'' is a parasitic fungus of chestnut trees. This disease came to be known as chestnut blight. Naturally found in South East Asia, accidental introductions led to invasive populations of ''C. parasitica'' in North America and Europe. In the first half of the 20th century, the fungal disease had a devastating economic and social impact on communities in the eastern United States. It killed an estimated four billion trees; or, by another count, 3.5 billion trees through 2013. Less severe impacts have occurred in Europe due to widespread ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Open Reading Frame
In molecular biology, reading frames are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames will be "open" (the "reading", however, refers to the RNA produced by transcription of the DNA and its subsequent interaction with the ribosome in translation). Such an open reading frame (ORF) may contain a start codon (usually AUG in terms of RNA) and by definition cannot extend beyond a stop codon (usually UAA, UAG or UGA in RNA). That start codon (not necessarily the first) indicates where translation may start. The transcription termination site is located after the ORF, beyond the translation stop codon. If transcription were to cease before the stop codon, an incomplete protein would be made during translation. In eukaryotic genes with multiple exons, introns are removed and exons are then joined together after transcription to ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
MEROPS
MEROPS is an online database for peptidases (also known as proteases, proteinases and proteolytic enzymes) and their inhibitors. The classification scheme for peptidases was published by Rawlings & Barrett in 1993, and that for protein inhibitors by Rawlings ''et al.'' in 2004.Rawlings, N.D., Tolle, D.P. & Barrett, A.J. (2004) "Evolutionary families of peptidase inhibitors." ''Biochem J'' 378, 705-716. The most recent version, MEROPS 12.5, was released in September 2023. Overview The classification is based on similarities at the tertiary and primary structural levels. Comparisons are restricted to that part of the sequence directly involved in the reaction, which in the case of a peptidase must include the active site, and for a protein inhibitor the reactive site. The classification is hierarchical: sequences are assembled into families, and families are assembled into clans. Each peptidase, family, and clan has a unique identifier. Classification Family The families of pe ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Chestnut
The chestnuts are the deciduous trees and shrubs in the genus ''Castanea'', in the beech family Fagaceae. The name also refers to the edible nuts they produce. They are native to temperate regions of the Northern Hemisphere. Description Chestnut trees are of moderate growth rate (for the Chinese chestnut tree) to fast-growing for American and European species. Their mature heights vary from the smallest species of chinkapins, often shrubby,''Chestnuts, Horse-Chestnuts, and Ohio Buckeyes'' . In Yard and Garden Brief, Horticulture department at University of Minnesota. to the giant of past American forests, '' C. dentata'' that could reach . Between these extremes ar ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Double-stranded RNA Viruses
Double-stranded RNA viruses (dsRNA viruses) are a polyphyletic group of viruses that have double-stranded genomes made of ribonucleic acid. The double-stranded genome is used as a template by the viral RNA dependent RNA polymerase (RdRp) to transcribe a positive-strand RNA functioning as messenger RNA (mRNA) for the host cell's ribosomes, which translate it into viral proteins. The positive-strand RNA can also be replicated by the RdRp to create a new double-stranded viral genome. A distinguishing feature of the dsRNA viruses is their ability to carry out transcription of the dsRNA segments within the capsid, and the required enzymes are part of the virion structure. Double-stranded RNA viruses are classified into two phyla, '' Duplornaviricota'' and '' Pisuviricota'' (specifically class '' Duplopiviricetes''), in the kingdom '' Orthornavirae'' and realm ''Riboviria''. The two phyla do not share a common dsRNA virus ancestor, but evolved their double strands two separat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Cytoplasm
The cytoplasm describes all the material within a eukaryotic or prokaryotic cell, enclosed by the cell membrane, including the organelles and excluding the nucleus in eukaryotic cells. The material inside the nucleus of a eukaryotic cell and contained within the nuclear membrane is termed the nucleoplasm. The main components of the cytoplasm are the cytosol (a gel-like substance), the cell's internal sub-structures, and various cytoplasmic inclusions. In eukaryotes the cytoplasm also includes the nucleus, and other membrane-bound organelles.The cytoplasm is about 80% water and is usually colorless. The submicroscopic ground cell substance, or cytoplasmic matrix, that remains after the exclusion of the cell organelles and particles is groundplasm. It is the hyaloplasm of light microscopy, a highly complex, polyphasic system in which all resolvable cytoplasmic elements are suspended, including the larger organelles such as the ribosomes, mitochondria, plant plasti ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Helicase
Helicases are a class of enzymes that are vital to all organisms. Their main function is to unpack an organism's genetic material. Helicases are motor proteins that move directionally along a nucleic double helix, separating the two hybridized nucleic acid strands (hence '' helic- + -ase''), via the energy gained from ATP hydrolysis. There are many helicases, representing the great variety of processes in which strand separation must be catalyzed. Approximately 1% of eukaryotic genes code for helicases. The human genome codes for 95 non-redundant helicases: 64 RNA helicases and 31 DNA helicases. Many cellular processes, such as DNA replication, transcription, translation, recombination, DNA repair and ribosome biogenesis involve the separation of nucleic acid strands that necessitates the use of helicases. Some specialized helicases are also involved in sensing viral nucleic acids during infection and fulfill an immunological function. Genetic mutations that affect helicase ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
RNA Replicase
RNA-dependent RNA polymerase (RdRp) or RNA replicase is an enzyme that catalyzes the replication of RNA from an RNA template. Specifically, it catalyzes synthesis of the RNA strand complementary to a given RNA template. This is in contrast to typical DNA-dependent RNA polymerases, which all organisms use to catalyze the transcription of RNA from a DNA template. RdRp is an essential protein encoded in the genomes of most RNA-containing viruses that lack a DNA stage, including SARS-CoV-2. Some eukaryotes also contain RdRps, which are involved in RNA interference and differ structurally from viral RdRps. History Viral RdRps were discovered in the early 1960s from studies on mengovirus and polio virus when it was observed that these viruses were not sensitive to actinomycin D, a drug that inhibits cellular DNA-directed RNA synthesis. This lack of sensitivity suggested the action of a virus-specific enzyme that could copy RNA from an RNA template. Distribution RdRps ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
N-terminus
The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the amine group is bonded to the carboxylic group of another amino acid, making it a chain. That leaves a free carboxylic group at one end of the peptide, called the C-terminus, and a free amine group on the other end called the N-terminus. By convention, peptide sequences are written N-terminus to C-terminus, left to right (in LTR writing systems). This correlates the translation direction to the text direction, because when a protein is translated from messenger RNA, it is created from the N-terminus to the C-terminus, as amino acids are added to the carboxyl end of the protein. Chemistry Each amino acid has an amine group and a carboxylic group. Amino acids link to one another by peptide bonds which form through a dehydration reaction that ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
Protease
A protease (also called a peptidase, proteinase, or proteolytic enzyme) is an enzyme that catalysis, catalyzes proteolysis, breaking down proteins into smaller polypeptides or single amino acids, and spurring the formation of new protein products. They do this by cleaving the peptide bonds within proteins by hydrolysis, a reaction where water breaks Covalent bond, bonds. Proteases are involved in numerous biological pathways, including Digestion#Protein digestion, digestion of ingested proteins, protein catabolism (breakdown of old proteins), and cell signaling. In the absence of functional accelerants, proteolysis would be very slow, taking hundreds of years. Proteases can be found in all forms of life and viruses. They have independently convergent evolution, evolved multiple times, and different classes of protease can perform the same reaction by completely different catalytic mechanisms. Classification Based on catalytic residue Proteases can be classified into seven broad ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] [Amazon] |
