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Hierarchical Clustering
In data mining and statistics, hierarchical clustering (also called hierarchical cluster analysis or HCA) is a method of cluster analysis that seeks to build a hierarchy of clusters. Strategies for hierarchical clustering generally fall into two categories: * Agglomerative: Agglomerative: Agglomerative clustering, often referred to as a "bottom-up" approach, begins with each data point as an individual cluster. At each step, the algorithm merges the two most similar clusters based on a chosen distance metric (e.g., Euclidean distance) and linkage criterion (e.g., single-linkage, complete-linkage). This process continues until all data points are combined into a single cluster or a stopping criterion is met. Agglomerative methods are more commonly used due to their simplicity and computational efficiency for small to medium-sized datasets . * Divisive: Divisive clustering, known as a "top-down" approach, starts with all data points in a single cluster and recursively splits the clu ...
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Data Mining
Data mining is the process of extracting and finding patterns in massive data sets involving methods at the intersection of machine learning, statistics, and database systems. Data mining is an interdisciplinary subfield of computer science and statistics with an overall goal of extracting information (with intelligent methods) from a data set and transforming the information into a comprehensible structure for further use. Data mining is the analysis step of the " knowledge discovery in databases" process, or KDD. Aside from the raw analysis step, it also involves database and data management aspects, data pre-processing, model and inference considerations, interestingness metrics, complexity considerations, post-processing of discovered structures, visualization, and online updating. The term "data mining" is a misnomer because the goal is the extraction of patterns and knowledge from large amounts of data, not the extraction (''mining'') of data itself. It also is a buzzwo ...
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UPGMA
UPGMA (unweighted pair group method with arithmetic mean) is a simple agglomerative (bottom-up) hierarchical clustering method. It also has a weighted variant, WPGMA, and they are generally attributed to Sokal and Michener. Note that the unweighted term indicates that all distances contribute equally to each average that is computed and does not refer to the math by which it is achieved. Thus the simple averaging in WPGMA produces a weighted result and the proportional averaging in UPGMA produces an unweighted result ('' see the working example''). Algorithm The UPGMA algorithm constructs a rooted tree ( dendrogram) that reflects the structure present in a pairwise similarity matrix (or a dissimilarity matrix). At each step, the nearest two clusters are combined into a higher-level cluster. The distance between any two clusters \mathcal and \mathcal, each of size (''i.e.'', cardinality) and , is taken to be the average of all distances d(x,y) between pairs of objects x in \m ...
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GNU Octave
GNU Octave is a scientific programming language for scientific computing and numerical computation. Octave helps in solving linear and nonlinear problems numerically, and for performing other numerical experiments using a language that is mostly compatible with MATLAB. It may also be used as a Batch processing, batch-oriented language. As part of the GNU Project, it is free software under the terms of the GNU General Public License. History The project was conceived around 1988. At first it was intended to be a companion to a chemical reactor design course. Full development was started by John W. Eaton in 1992. The first alpha release dates back to 4 January 1993 and on 17 February 1994 version 1.0 was released. Version 9.2.0 was released on 7 June 2024. The program is named after Octave Levenspiel, a former professor of the principal author. Levenspiel was known for his ability to perform quick back-of-the-envelope calculations. Development history Developments In addition ...
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Julia (programming Language)
Julia is a high-level programming language, high-level, general-purpose programming language, general-purpose dynamic programming language, dynamic programming language, designed to be fast and productive, for e.g. data science, artificial intelligence, machine learning, modeling and simulation, most commonly used for numerical analysis and computational science. Distinctive aspects of Julia's design include a type system with parametric polymorphism and the use of multiple dispatch as a core programming paradigm, a default just-in-time compilation, just-in-time (JIT) compiler (with support for ahead-of-time compilation) and an tracing garbage collection, efficient (multi-threaded) garbage collection implementation. Notably Julia does not support classes with encapsulated methods and instead it relies on structs with generic methods/functions not tied to them. By default, Julia is run similarly to scripting languages, using its runtime, and allows for read–eval–print loop, i ...
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ELKI
ELKI (''Environment for Developing KDD-Applications Supported by Index-Structures'') is a data mining (KDD, knowledge discovery in databases) software framework developed for use in research and teaching. It was originally created by the database systems research unit at the Ludwig Maximilian University of Munich, Germany, led by Professor Hans-Peter Kriegel. The project has continued at the Technical University of Dortmund, Germany. It aims at allowing the development and evaluation of advanced data mining algorithms and their interaction with database index structures. Description The ELKI framework is written in Java and built around a modular architecture. Most currently included algorithms perform clustering, outlier detection, and database indexes. The object-oriented architecture allows the combination of arbitrary algorithms, data types, distance functions, indexes, and evaluation measures. The Java just-in-time compiler optimizes all combinations to a simila ...
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ALGLIB
ALGLIB is a cross-platform open source numerical analysis and data processing library. It can be used from several programming languages ( C++, C#, VB.NET, Python, Delphi, Java). ALGLIB started in 1999 and has a long history of steady development with roughly 1-3 releases per year. It is used by several open-source projects, commercial libraries, and applications (e.g. TOL project, Math.NET Numerics, SpaceClaim). Features Distinctive features of the library are: * Support for several programming languages with identical APIs (as of 2023, it supports C++, C#, FreePascal/Delphi, VB.NET, Python, and Java) * Self-contained code with no mandatory external dependencies and easy installation * Portability (it was tested under x86/x86-64/ARM, Windows and Linux) * Two independent backends (pure C# implementation, native C implementation) with automatically generated APIs (C++, C#, ...) * Same functionality of commercial and GPL versions, with enhancements for speed and parallelism ...
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Iris Dendrogram
Iris most often refers to: *Iris (anatomy), part of the eye * Iris (color), an ambiguous color term *Iris (mythology), a Greek goddess * ''Iris'' (plant), a genus of flowering plants * Iris (given name), a feminine given name, and a list of people so named Iris or IRIS may also refer to: Arts and media Fictional entities * Iris (''American Horror Story''), an ''American Horror Story: Hotel'' character * Iris (''Fire Force''), a character in the manga series ''Fire Force'' * Iris (''Mega Man''), a ''Mega Man X4'' character ** Iris, a ''Mega Man Battle Network'' character * Iris (''Pokémon'') ** Iris (''Pokémon'' anime) * Sorceress Iris, a ''Magicians of Xanth'' character * Iris, a kaiju character in '' Gamera 3: The Revenge of Iris'' * Iris, a '' LoliRock'' character * Iris, a '' Lufia II: Rise of the Sinistrals'' (1995) character * Iris, a '' Phoenix Wright: Ace Attorney − Trials and Tribulations'' character * Iris, a ''Ruby Gloom'' character * Iris, a ''Taxi Driver ...
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Hierarchical Clustering Simple Diagram
A hierarchy (from Greek: , from , 'president of sacred rites') is an arrangement of items (objects, names, values, categories, etc.) that are represented as being "above", "below", or "at the same level as" one another. Hierarchy is an important concept in a wide variety of fields, such as architecture, philosophy, design, mathematics, computer science, organizational theory, systems theory, systematic biology, and the social sciences (especially political science). A hierarchy can link entities either directly or indirectly, and either vertically or diagonally. The only direct links in a hierarchy, insofar as they are hierarchical, are to one's immediate superior or to one of one's subordinates, although a system that is largely hierarchical can also incorporate alternative hierarchies. Hierarchical links can extend "vertically" upwards or downwards via multiple links in the same direction, following a path. All parts of the hierarchy that are not linked vertically to one anothe ...
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Metric (mathematics)
In mathematics, a metric space is a set together with a notion of ''distance'' between its elements, usually called points. The distance is measured by a function called a metric or distance function. Metric spaces are a general setting for studying many of the concepts of mathematical analysis and geometry. The most familiar example of a metric space is 3-dimensional Euclidean space with its usual notion of distance. Other well-known examples are a sphere equipped with the angular distance and the hyperbolic plane. A metric may correspond to a metaphorical, rather than physical, notion of distance: for example, the set of 100-character Unicode strings can be equipped with the Hamming distance, which measures the number of characters that need to be changed to get from one string to another. Since they are very general, metric spaces are a tool used in many different branches of mathematics. Many types of mathematical objects have a natural notion of distance and th ...
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Euclidean Distance
In mathematics, the Euclidean distance between two points in Euclidean space is the length of the line segment between them. It can be calculated from the Cartesian coordinates of the points using the Pythagorean theorem, and therefore is occasionally called the Pythagorean distance. These names come from the ancient Greek mathematicians Euclid and Pythagoras. In the Greek deductive geometry exemplified by Euclid's ''Elements'', distances were not represented as numbers but line segments of the same length, which were considered "equal". The notion of distance is inherent in the compass tool used to draw a circle, whose points all have the same distance from a common center point. The connection from the Pythagorean theorem to distance calculation was not made until the 18th century. The distance between two objects that are not points is usually defined to be the smallest distance among pairs of points from the two objects. Formulas are known for computing distances b ...
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Clusters
may refer to: Science and technology Astronomy * Cluster (spacecraft), constellation of four European Space Agency spacecraft * Cluster II (spacecraft), a European Space Agency mission to study the magnetosphere * Asteroid cluster, a small asteroid family * Galaxy cluster, large gravitationally bound groups of galaxies, or groups of groups of galaxies * Supercluster, the largest gravitationally bound objects in the universe, composed of many galaxy clusters * Star cluster ** Globular cluster, a spherical collection of stars whose orbit is either partially or completely in the halo of the parent galaxy ** Open cluster, a spherical collection of stars that orbits a galaxy in the galactic plane Biology and medicine * Cancer cluster, in biomedicine, an occurrence of a greater-than-expected number of cancer cases * Cluster headache, a neurological disease that involves an immense degree of pain * Cluster of differentiation, protocol used for the identification and investigati ...
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