Dark Diversity
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Dark Diversity
Dark diversity is the set of species that are absent from a study site but present in the surrounding region and potentially able to inhabit particular ecological conditions. It can be determined based on species distribution, dispersal potential and ecological needs. The term was introduced in 2011 by three researchers from the University of Tartu and was inspired by the idea of dark matter in physics since dark diversity too cannot be directly observed. Overview Dark diversity is part of the species pool concept. A species pool is defined as set of all species that are able to inhabit a particular site and that are present in the surrounding region or landscape. Dark diversity comprises species that belong to a particular species pool but that are not currently present at a site. Dark diversity is related to "habitat-specific" or "filtered" species pool which only includes species that can both disperse to and potentially inhabit the study site. For example, if fish diversity ...
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Species
In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. Other ways of defining species include their karyotype, DNA sequence, morphology, behaviour or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. However, only about 14% of these had been described by 2011. All species (except viruses) are given a two-part name, a "binomial". The first part of a binomial is the genus to which the species belongs. The second part is called the specific name or the specific epithet (in botanical nomenclature, also sometimes i ...
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Biogeographic
Biogeography is the study of the distribution of species and ecosystems in geographic space and through geological time. Organisms and biological communities often vary in a regular fashion along geographic gradients of latitude, elevation, isolation and habitat area.Brown University, "Biogeography." Accessed February 24, 2014. . Phytogeography is the branch of biogeography that studies the distribution of plants. Zoogeography is the branch that studies distribution of animals. Mycogeography is the branch that studies distribution of fungi, such as mushrooms. Knowledge of spatial variation in the numbers and types of organisms is as vital to us today as it was to our early human ancestors, as we adapt to heterogeneous but geographically predictable environments. Biogeography is an integrative field of inquiry that unites concepts and information from ecology, evolutionary biology, taxonomy, geology, physical geography, palaeontology, and climatology.Dansereau, Pierre. 195 ...
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Ecology
Ecology () is the study of the relationships between living organisms, including humans, and their physical environment. Ecology considers organisms at the individual, population, community, ecosystem, and biosphere level. Ecology overlaps with the closely related sciences of biogeography, evolutionary biology, genetics, ethology, and natural history. Ecology is a branch of biology, and it is not synonymous with environmentalism. Among other things, ecology is the study of: * The abundance, biomass, and distribution of organisms in the context of the environment * Life processes, antifragility, interactions, and adaptations * The movement of materials and energy through living communities * The successional development of ecosystems * Cooperation, competition, and predation within and between species * Patterns of biodiversity and its effect on ecosystem processes Ecology has practical applications in conservation biology, wetland management, natural resource managemen ...
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Habitat
In ecology, the term habitat summarises the array of resources, physical and biotic factors that are present in an area, such as to support the survival and reproduction of a particular species. A species habitat can be seen as the physical manifestation of its ecological niche. Thus "habitat" is a species-specific term, fundamentally different from concepts such as environment or vegetation assemblages, for which the term "habitat-type" is more appropriate. The physical factors may include (for example): soil, moisture, range of temperature, and light intensity. Biotic factors will include the availability of food and the presence or absence of predators. Every species has particular habitat requirements, with habitat generalist species able to thrive in a wide array of environmental conditions while habitat specialist species requiring a very limited set of factors to survive. The habitat of a species is not necessarily found in a geographical area, it can be the interior ...
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Footnotes
A note is a string of text placed at the bottom of a page in a book or document or at the end of a chapter, volume, or the whole text. The note can provide an author's comments on the main text or citations of a reference work in support of the text. Footnotes are notes at the foot of the page while endnotes are collected under a separate heading at the end of a chapter, volume, or entire work. Unlike footnotes, endnotes have the advantage of not affecting the layout of the main text, but may cause inconvenience to readers who have to move back and forth between the main text and the endnotes. In some editions of the Bible, notes are placed in a narrow column in the middle of each page between two columns of biblical text. Numbering and symbols In English, a footnote or endnote is normally flagged by a superscripted number immediately following that portion of the text the note references, each such footnote being numbered sequentially. Occasionally, a number between brack ...
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Species Pool
The ecological and biogeographical concept of the species pool describes all species available that could potentially colonize and inhabit a focal habitat area. The concept lays emphasis on the fact that "local communities aren't closed systems, and that the species occupying any local site typically came from somewhere else", however, the species pool concept may suffer from the logical fallacy of composition. Most local communities, however, have just a fraction of its species pool present. It is derived from MacArthur and Wilson's Island Biogeography Theory that examines the factors that affect the species richness of isolated natural communities. It helps to understand the composition and richness of local communities and how they are influenced by biogeographic and evolutionary processes acting at large spatial and temporal scales. The absent portion of species pool—dark diversity—has been used to understand processes influencing local communities. Methods to estimate potent ...
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Species Diversity
Species diversity is the number of different species that are represented in a given community (a dataset). The effective number of species refers to the number of equally abundant species needed to obtain the same mean proportional species abundance as that observed in the dataset of interest (where all species may not be equally abundant). Meanings of species diversity may include species richness, taxonomic or phylogenetic diversity, and/or species evenness. Species richness is a simple count of species. Taxonomic or phylogenetic diversity is the genetic relationship between different groups of species. Species evenness quantifies how equal the abundances of the species are.Hill, M. O. (1973) Diversity and evenness: a unifying notation and its consequences. Ecology, 54, 427–432Tuomisto, H. (2010) A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity. Ecography, 33, 2-22. Tuomisto, H. 20 ...
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Measurement Of Biodiversity
Conservation biologists have designed a variety of objective means to measure biodiversity empirically. Each measure of biodiversity relates to a particular use of the data. For practical conservationists, measurements should include . For others, a more economically defensible definition should allow the ensuring of continued possibilities for both adaptation and future use by humans, assuring environmental sustainability. As a consequence, biologists argue that this measure is likely to be associated with the variety of genes. Since it cannot always be said which genes are more likely to prove beneficial, the best choice for conservation is to assure the persistence of as many genes as possible. For ecologists, this latter approach is sometimes considered too restrictive, as it prohibits ecological succession. Taxonomic Diversity Biodiversity is usually plotted as taxonomic richness of a geographic area, with some reference to a temporal scale. Whittaker described three com ...
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Biodiversity
Biodiversity or biological diversity is the variety and variability of life on Earth. Biodiversity is a measure of variation at the genetic (''genetic variability''), species (''species diversity''), and ecosystem (''ecosystem diversity'') level. Biodiversity is not distributed evenly on Earth; it is usually greater in the tropics as a result of the warm climate and high primary productivity in the region near the equator. Tropical forest ecosystems cover less than 10% of earth's surface and contain about 90% of the world's species. Marine biodiversity is usually higher along coasts in the Western Pacific, where sea surface temperature is highest, and in the mid-latitudinal band in all oceans. There are latitudinal gradients in species diversity. Biodiversity generally tends to cluster in hotspots, and has been increasing through time, but will be likely to slow in the future as a primary result of deforestation. It encompasses the evolutionary, ecological, and cultural ...
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Co-occurrence Matrix
A co-occurrence matrix or co-occurrence distribution (also referred to as : ''gray-level co-occurrence matrices'' GLCMs) is a matrix that is defined over an image to be the distribution of co-occurring pixel values (grayscale values, or colors) at a given offset. It is used as an approach to texture analysis with various applications especially in medical image analysis. Method Given a grey-level image I, co-occurrence matrix computes how often pairs of pixels with a specific value and offset occur in the image. * The offset, (\Delta x, \Delta y), is a position operator that can be applied to any pixel in the image (ignoring edge effects): for instance, (1, 2) could indicate "one down, two right". * An image with p different pixel values will produce a p \times p co-occurrence matrix, for the given offset. * The (i, j)^\text value of the co-occurrence matrix gives the number of times in the image that the i^\text and j^\text pixel values occur in the relation given by the offse ...
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Indicator Value
Indicator value is a term that has been used in the ecology of plants for two different indices. The older usage of the term refers to Ellenberg's indicator values from 1974, which are based on a simple ordinal classification of plants according to the position of their realized ecological niche along an environmental gradient.Ellenberg H. Zeigerwerte der Gefässpflanzen Mitteleuropas / H. Ellenberg // Scripta geobotanica. Göttingen, 1974. – Vol. 9. – 197 p. Since 1997, the term has also been used to refer to Dufrêne & Legendre's indicator value, which is a quantitative index measuring the statistical alliance of a species to any one of the classes in a classification of sites. According to Ellenberg Ellenberg's indicator values were the first model of bioindication proposed and applied to the flora of Central Europe, and they have a long tradition in interpretation and understanding of plant communities and their evolution. The latest edition of Ellenberg's indicator values ...
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Environmental Niche Modelling
Species distribution modelling (SDM), also known as environmental (or ecological) niche modelling (ENM), habitat modelling, predictive habitat distribution modelling, and range mapping uses computer algorithms to predict the distribution of a species across geographic space and time using environmental data. The environmental data are most often climate data (e.g. temperature, precipitation), but can include other variables such as soil type, water depth, and land cover. SDMs are used in several research areas in conservation biology, ecology and evolution. These models can be used to understand how environmental conditions influence the occurrence or abundance of a species, and for predictive purposes (ecological forecasting). Predictions from an SDM may be of a species’ future distribution under climate change, a species’ past distribution in order to assess evolutionary relationships, or the potential future distribution of an invasive species. Predictions of current and/or f ...
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