Rhizobiales
   HOME

TheInfoList



OR:

The ''Hyphomicrobiales'' are an
order Order, ORDER or Orders may refer to: * Categorization, the process in which ideas and objects are recognized, differentiated, and understood * Heterarchy, a system of organization wherein the elements have the potential to be ranked a number of ...
of
Gram-negative Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wa ...
Alphaproteobacteria Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteobacteria. The Alphaproteobacteria are highly diverse and ...
. The
rhizobia Rhizobia are diazotrophic bacteria that fix nitrogen after becoming established inside the root nodules of legumes (Fabaceae). To express genes for nitrogen fixation, rhizobia require a plant host; they cannot independently fix nitrogen. In g ...
, which fix nitrogen and are
symbiotic Symbiosis (from Greek , , "living together", from , , "together", and , bíōsis, "living") is any type of a close and long-term biological interaction between two different biological organisms, be it mutualistic, commensalistic, or para ...
with plant roots, appear in several different families. The four families ''
Nitrobacteraceae The Nitrobacteraceae are a family of gram-negative, aerobic bacteria. They include plant-associated bacteria such as ''Bradyrhizobium'', a genus of rhizobia associated with some legumes. It also contains animal-associated bacteria such as '' Afi ...
'', ''
Hyphomicrobiaceae The Hyphomicrobiaceae are a family of bacteria. Among others, they include ''Rhodomicrobium'', a genus of purple bacteria. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature Li ...
'', '' Phyllobacteriaceae'', and ''
Rhizobiaceae The Rhizobiaceae is a family of Pseudomonadota comprising multiple subgroups that enhance and hinder plant development. Some bacteria found in the family are used for plant nutrition and collectively make up the rhizobia. Other bacteria such as ' ...
'' contain at least several genera of nitrogen-fixing, legume-nodulating, microsymbiotic bacteria. Examples are the genera ''
Bradyrhizobium ''Bradyrhizobium'' is a genus of Gram-negative soil bacteria, many of which fix nitrogen. Nitrogen fixation is an important part of the nitrogen cycle. Plants cannot use atmospheric nitrogen (N2); they must use nitrogen compounds such as nitrates ...
'' and ''
Rhizobium ''Rhizobium'' is a genus of Gram-negative soil bacteria that fix nitrogen. ''Rhizobium'' species form an endosymbiotic nitrogen-fixing association with roots of (primarily) legumes and other flowering plants. The bacteria colonize plant cells ...
''. Species of the ''
Methylocystaceae The Methylocystaceae are a family of bacteria that are capable of obtaining carbon and energy from methane. Such bacteria are called methanotrophs, and in particular the Methylocystaceae comprise the type II methanotrophs, which are structura ...
'' are methanotrophs; they use
methanol Methanol (also called methyl alcohol and wood spirit, amongst other names) is an organic chemical and the simplest aliphatic alcohol, with the formula C H3 O H (a methyl group linked to a hydroxyl group, often abbreviated as MeOH). It is ...
(CH3OH) or
methane Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The relative abundance of methane ...
(CH4) as their sole energy and carbon sources. Other important genera are the human pathogens ''
Bartonella ''Bartonella'' is a genus of Gram-negative bacteria. It is the only genus in the family Bartonellaceae. Facultative intracellular parasites, ''Bartonella'' species can infect healthy people, but are considered especially important as opportunis ...
'' and ''
Brucella ''Brucella'' is a genus of Gram-negative bacteria, named after David Bruce (1855–1931). They are small (0.5 to 0.7 by 0.6 to 1.5 µm), non encapsulated, non motile, facultatively intracellular coccobacilli. ''Brucella'' spp. are the caus ...
'', as well as ''
Agrobacterium ''Agrobacterium'' is a genus of Gram-negative bacteria established by H. J. Conn that uses horizontal gene transfer to cause tumors in plants. ''Agrobacterium tumefaciens'' is the most commonly studied species in this genus. ''Agrobacterium ...
'' (useful in
genetic engineering Genetic engineering, also called genetic modification or genetic manipulation, is the modification and manipulation of an organism's genes using technology. It is a set of technologies used to change the genetic makeup of cells, including ...
).


Taxonomy


Accepted families

* ''
Aestuariivirgaceae ''Aestuariivirga litoralis'' is a species of Alphaproteobacteria. References

Hyphomicrobiales {{Hyphomicrobiales-stub ...
'' Li ''et al''. 2019 * '' Afifellaceae'' Hördt ''et al''. 2020 * ''
Ahrensiaceae ''Ahrensiaceae'' is a family of Alphaproteobacteria Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteo ...
'' Hördt ''et al''. 2020 * ''
Alsobacteraceae ''Alsobacter'' is a genus of Alphaproteobacteria. References

Hyphomicrobiales Bacteria genera {{Hyphomicrobiales-stub ...
'' Sun ''et al''. 2018 * ''
Amorphaceae ''Amorphaceae'' is a family of Alphaproteobacteria Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteobac ...
'' Hördt ''et al''. 2020 * ''
Ancalomicrobiaceae ''Ancalomicrobiaceae'' is a family of Alphaproteobacteria Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphapr ...
'' Dahal ''et al''. 2018 * ''
Aurantimonadaceae The ''Aurantimonadaceae'' are a small family of marine bacteria. Notable Species '' Aurantimonas coralicida'' causes a white plague in corals. '' Fulvimarina pelagi'' was isolated from seawater, and takes the form of nonmotile rods. ''Fulvimar ...
'' Hördt ''et al''. 2020 * ''
Bartonellaceae ''Bartonella'' is a genus of Gram-negative bacteria. It is the only genus in the family Bartonellaceae. Facultative intracellular parasites, ''Bartonella'' species can infect healthy people, but are considered especially important as opportu ...
'' Gieszczykiewicz 1939 (Approved Lists 1980) * ''
Beijerinckiaceae The Beijerinckiaceae are a family of Hyphomicrobiales named after the Dutch microbiologist Martinus Willem Beijerinck. '' Beijerinckia'' is a genus of free-living aerobic nitrogen-fixing bacteria. Acidotolerant ''Beijerinckiaceae'' has been sho ...
'' Garrity ''et al''. 2006 * ''
Blastochloridaceae ''Blastochloris'' is a genus of bacteria from the order of Hyphomicrobiales The ''Hyphomicrobiales'' are an order of Gram-negative Alphaproteobacteria. The rhizobia, which fix nitrogen and are symbiotic with plant roots, appear in several ...
'' Hördt ''et al''. 2020 * '' Boseaceae'' Hördt ''et al''. 2020 * '' Breoghaniaceae'' Hördt ''et al''. 2020 * ''
Brucellaceae The Brucellaceae are a family of the Gram-negative Hyphomicrobiales. They are named after Sir David Bruce, a Scottish microbiologist. They are aerobic chemoorganotroph Primary nutritional groups are groups of organisms, divided in relation t ...
'' Breed ''et al''. 1957 (Approved Lists 1980) * '' Chelatococcaceae'' Dedysh ''et al''. 2016 * ''
Cohaesibacteraceae The Cohaesibacteraceae are a family of bacteria. References Hyphomicrobiales {{Hyphomicrobiales-stub ...
'' Hwang and Cho 2008 * ''
Devosiaceae ''Devosiaceae'' is a family of Alphaproteobacteria. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online ...
'' Hördt ''et al''. 2020 * ''
Hyphomicrobiaceae The Hyphomicrobiaceae are a family of bacteria. Among others, they include ''Rhodomicrobium'', a genus of purple bacteria. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature Li ...
'' Babudieri 1950 (Approved Lists 1980) * '' Kaistiaceae'' Hördt ''et al''. 2020 * '' Lichenibacteriaceae'' Pankratov ''et al''. 2020 * '' Lichenihabitantaceae'' Noh ''et al''. 2019 * ''
Methylobacteriaceae The Methylobacteriaceae are a family of Hyphomicrobiales The ''Hyphomicrobiales'' are an order of Gram-negative Alphaproteobacteria. The rhizobia, which fix nitrogen and are symbiotic with plant roots, appear in several different families ...
'' Garrity ''et al''. 2006 * ''
Methylocystaceae The Methylocystaceae are a family of bacteria that are capable of obtaining carbon and energy from methane. Such bacteria are called methanotrophs, and in particular the Methylocystaceae comprise the type II methanotrophs, which are structura ...
'' Bowman 2006 * ''
Nitrobacteraceae The Nitrobacteraceae are a family of gram-negative, aerobic bacteria. They include plant-associated bacteria such as ''Bradyrhizobium'', a genus of rhizobia associated with some legumes. It also contains animal-associated bacteria such as '' Afi ...
'' corrig. Buchanan 1917 (Approved Lists 1980) * '' Notoacmeibacteraceae'' Huang ''et al''. 2017 * ''
Parvibaculaceae ''Parvibaculaceae'' is a family (biology), family of Alphaproteobacteria. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN). The phylogeny is based on whole-genome analysis. ...
'' Hördt ''et al''. 2020 * '' Phreatobacteraceae'' Hördt ''et al''. 2020 * '' Phyllobacteriaceae'' Mergaert and Swings 2006 * '' Pleomorphomonadaceae'' Hördt ''et al''. 2020 * '' Pseudoxanthobacteraceae'' Hördt ''et al''. 2020 * '' Rhabdaerophilaceae'' Ming ''et al''. 2020 * ''
Rhizobiaceae The Rhizobiaceae is a family of Pseudomonadota comprising multiple subgroups that enhance and hinder plant development. Some bacteria found in the family are used for plant nutrition and collectively make up the rhizobia. Other bacteria such as ' ...
'' Conn 1938 (Approved Lists 1980) * '' Rhodobiaceae'' Garrity ''et al''. 2006 * '' Roseiarcaceae'' Kulichevskaya ''et al''. 2014 * ''
Salinarimonadaceae ''Salinarimonadaceae'' is a family of Alphaproteobacteria Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alpha ...
'' Cole ''et al''. 2018 * ''
Segnochrobactraceae ''Segnochrobactrum spirostomi'' is a species of Alphaproteobacteria. References

Hyphomicrobiales {{Hyphomicrobiales-stub ...
'' Akter ''et al''. 2020 * '' Stappiaceae'' Hördt ''et al''. 2020 * '' Tepidamorphaceae'' Hördt ''et al''. 2020 * ''
Xanthobacteraceae The Xanthobacteraceae are a family of bacteria. Among others, they include '' Azorhizobium'', a genus of rhizobia. ''Xanthobacteraceae'' is a diverse group of Gram-negative, rod-shaped, sometimes twisted chemoorganotrophic or facultative chemo ...
'' Lee ''et al''. 2005


Unassigned Genera

The following genus has not been assigned to a family: * '' Flaviflagellibacter'' Dong ''et al''. 2019


Provisional Taxa

These taxa have been published, but have not been validated according to the Bacteriological Code: * "''Nordella''" La Scola ''et al''. 2004 * "''Propylenellaceae''" Liu ''et al''. 2021 ** "''Propylenella''" Liu ''et al''. 2021 *** "''Propylenella binzhouense''" Liu ''et al''. 2021 * "''Thermopetrobacter''" Sislak 2013


Phylogeny

The currently accepted taxonomy is based on the
List of Prokaryotic names with Standing in Nomenclature List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the nomenclature, naming and Taxonomy (biology), taxonomy of prokaryotes, following the taxonomy requirements and rulings of the In ...
and the phylogeny is based on whole-genome sequences.


Natural genetic transformation

Natural genetic transformation has been reported in at least four ''Hyphomicrobiales'' species: ''
Agrobacterium tumefaciens ''Agrobacterium radiobacter'' (more commonly known as ''Agrobacterium tumefaciens'') is the causal agent of crown gall disease (the formation of tumours) in over 140 species of eudicots. It is a rod-shaped, Gram-negative soil bacterium. Symptom ...
'', '' Methylobacterium organophilum'', '' Ensifer adhaerens'', and ''
Bradyrhizobium japonicum ''Bradyrhizobium japonicum'' is a species of legume- root nodulating, microsymbiotic nitrogen-fixing bacteria. The species is one of many Gram-negative, rod-shaped bacteria commonly referred to as rhizobia. Within that broad classification, w ...
''. Natural genetic transformation is a sexual process involving DNA transfer from one bacterial cell to another through the intervening medium, and the integration of the donor sequence into the recipient genome by
homologous recombination Homologous recombination is a type of genetic recombination in which genetic information is exchanged between two similar or identical molecules of double-stranded or single-stranded nucleic acids (usually DNA as in cellular organisms but may ...
.


See also

* Lar1


Notes


References


Further reading

* * * * * {{Authority control Bacteria orders Soil biology