Phytophthora megakarya
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''Phytophthora megakarya'' is an
oomycete Oomycota forms a distinct phylogenetic lineage of fungus-like eukaryotic microorganisms, called oomycetes (). They are filamentous and heterotrophic, and can reproduce both sexually and asexually. Sexual reproduction of an oospore is the resul ...
plant pathogen that causes black pod disease in cocoa trees in
west West or Occident is one of the four cardinal directions or points of the compass. It is the opposite direction from east and is the direction in which the Sun sets on the Earth. Etymology The word "west" is a Germanic word passed into some ...
and
central Africa Central Africa is a subregion of the African continent comprising various countries according to different definitions. Angola, Burundi, the Central African Republic, Chad, the Democratic Republic of the Congo, the Republic of the Congo ...
. This pathogen can cause detrimental loss of yield in the economically important cocoa industry, worth approximately $70 billion annually. It can damage any part of the tree, causing total yield losses which can easily reach 20-25%. A mixture of chemical and cultural controls, as well as choosing resistant plant varieties, are often necessary to control this pathogen.


Hosts and symptoms

''Phytophthora megakaryas only known host is ''
Theobroma cacao ''Theobroma cacao'', also called the cacao tree and the cocoa tree, is a small ( tall) evergreen tree in the family Malvaceae. Its seeds, cocoa beans, are used to make chocolate liquor, cocoa solids, cocoa butter and chocolate. The largest pr ...
'', or the cocoa tree, located in West and Central Africa. It is considered to be the most virulent species of ''
Phytophthora ''Phytophthora'' (from Greek (''phytón''), "plant" and (), "destruction"; "the plant-destroyer") is a genus of plant-damaging oomycetes (water molds), whose member species are capable of causing enormous economic losses on crops worldwide, a ...
'' which infects ''T. cacao'', causing the greatest percentage of yield loss. This pathogen causes black pod disease which produces an array of symptoms throughout the host’s life cycle. ''P. megakarya'' is a
facultative parasite A facultative parasite is an organism that may resort to parasitic activity, but does not absolutely rely on any host for completion of its life cycle. Examples of facultative parasitism occur among many species of fungi, such as family members ...
that can infect any part of the cacao tree at any time under optimal environmental conditions. Trees as young as seedlings may show symptoms of infection such as
blight Blight refers to a specific symptom affecting plants in response to infection by a pathogenic organism. Description Blight is a rapid and complete chlorosis, browning, then death of plant tissues such as leaves, branches, twigs, or floral org ...
or root rot. Bark wounds, called cankers, can form on stems and branches as a result of disease. Infected cocoa pods rot and turn black, providing insight on the origin of the disease name. Other symptoms that may occur include
damping off Damping off (or damping-off) is a horticultural disease or condition, caused by several different pathogens that kill or weaken seeds or seedlings before or after they germinate. It is most prevalent in wet and cool conditions. Symptoms There ar ...
, dieback, lesions,
mummification A mummy is a dead human or an animal whose soft tissues and organs have been preserved by either intentional or accidental exposure to chemicals, extreme cold, very low humidity, or lack of air, so that the recovered body does not decay furt ...
, premature drop, soft rot, and shriveling.''Phytophthora megakarya'' (Black Pod of Cocoa). “Invasive Species Compendium”. CABI The process of infection by ''P. megakarya'' is quite rapid. Small translucent spots on the pod can be seen 2 to 3 days after infection. Whitish spores can be seen growing on these spots 3 to 5 days following their emergence. The spots will grow and darken in color until eventually the entire pod turns black and becomes mummified.M. A. Barreto et al. (2015). “Detection of genetic resistance to cocoa black pod disease caused by three ''Phytophthora'' species”. Springer Science+Business Media Dordrecht In more advanced stages, the pathogen may take over the internal tissues and cause the cocoa beans to become warped. ''P. megakarya'' also readily forms stem cankers that are usually confined to the lower part of the tree, but may be present anywhere on the tree. Canker lesions may extend beneath the soil surface, providing a source of primary inoculum. ''P. megakarya'' can be distinguished from other ''Phytophthora'' species by its production of
gametangia A gametangium (plural: gametangia) is an organ or cell in which gametes are produced that is found in many multicellular protists, algae, fungi, and the gametophytes of plants. In contrast to gametogenesis in animals, a gametangium is a haploi ...
. These gametangia have large nuclei containing five to six
chromosome A chromosome is a long DNA molecule with part or all of the genetic material of an organism. In most chromosomes the very long thin DNA fibers are coated with packaging proteins; in eukaryotic cells the most important of these proteins are ...
s and
sporangia A sporangium (; from Late Latin, ) is an enclosure in which spores are formed. It can be composed of a single cell or can be multicellular. Virtually all plants, fungi, and many other lineages form sporangia at some point in their life cyc ...
growing off of medium-length stalks.


Disease cycle

''P. megakarya'' is an
oomycete Oomycota forms a distinct phylogenetic lineage of fungus-like eukaryotic microorganisms, called oomycetes (). They are filamentous and heterotrophic, and can reproduce both sexually and asexually. Sexual reproduction of an oospore is the resul ...
that has a polycyclic disease cycle, producing three asexual spore types:
sporangia A sporangium (; from Late Latin, ) is an enclosure in which spores are formed. It can be composed of a single cell or can be multicellular. Virtually all plants, fungi, and many other lineages form sporangia at some point in their life cyc ...
,
zoospore A zoospore is a motile asexual spore that uses a flagellum for locomotion. Also called a swarm spore, these spores are created by some protists, bacteria, and fungi to propagate themselves. Diversity Flagella types Zoospores may possess one or ...
s, and
chlamydospore A chlamydospore is the thick-walled large resting spore of several kinds of fungi, including Ascomycota such as '' Candida'', Basidiomycota such as '' Panus'', and various Mortierellales species. It is the life-stage which survives in unfavourable ...
s. Although it is rare, ''P. megakarya'' can also produce sexual
oospore An oospore is a thick-walled sexual spore that develops from a fertilized oosphere in some algae, fungi, and oomycetes. They are believed to have evolved either through the fusion of two species or the chemically-induced stimulation of mycelia ...
s through
heterothallic Heterothallic species have sexes that reside in different individuals. The term is applied particularly to distinguish heterothallic fungi, which require two compatible partners to produce sexual spores, from homothallic ones, which are capable ...
mating which requires two different
mating type Mating types are the microorganism equivalent to sexes in multicellular lifeforms and are thought to be the ancestor to distinct sexes. They also occur in macro-organisms such as fungi. Definition Mating types are the microorganism equivalent to ...
s; so far none have been observed.
Mycelium Mycelium (plural mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Fungal colonies composed of mycelium are found in and on soil and many other substrates. A typical single spore germinates ...
plays an important role in the infection of the cocoa trees; mycelium found in the soil and in cankers on the bark develops into sporangia, which can then germinate. Zoospores are produced from these sporangia as secondary inoculum. They may infect the plant either directly or indirectly depending on the availability of water. A direct infection by the zoospore results in the production of more mycelia, which may develop into sporangia capable of releasing more inoculum or chlamydospores. Chlamydospores serve as survival structures for ''P. megakarya'', in some instances surviving as long as 18 months. An indirect infection results in the formation of
encyst A microbial cyst is a resting or dormant stage of a microorganism, usually a bacterium or a protist or rarely an invertebrate animal, that helps the organism to survive in unfavorable environmental conditions. It can be thought of as a state of ...
ed spores in the absence of water; mycelium production occurs after germination of these spores. ''P. megakarya'' depends heavily on the correct environmental conditions to cause disease. Primary infections usually occur in June, however, disease peaks between August and October. Under humid conditions a single pod may produce up to 4 million sporangia. These sporangia can be dispersed by rain, movement of planting materials, insects, rodents, and contaminated harvesting tools.


Pathogenesis

Not much is known about the
pathogenesis Pathogenesis is the process by which a disease or disorder develops. It can include factors which contribute not only to the onset of the disease or disorder, but also to its progression and maintenance. The word comes from Greek πάθος ''pat ...
of ''P. megakarya''. Like all oomycetes, zoospores produced by ''P. megakarya'' need free water on plant surfaces in order to encyst,
germinate Germination is the process by which an organism grows from a seed or spore. The term is applied to the sprouting of a seedling from a seed of an angiosperm or gymnosperm, the growth of a sporeling from a spore, such as the spores of fungi, fer ...
, and penetrate host tissues. For the pathogen to enter a plant cell, the
effector protein In biochemistry, an effector molecule is usually a small molecule that selectively binds to a protein and regulates its biological activity. In this manner, effector molecules act as ligands that can increase or decrease enzyme activity, gen ...
of the pathogen must attach itself to the
binding protein A binding protein is any protein that acts as an agent to bind two or more molecules together. Examples include: * DNA-binding protein ** Single-strand binding protein ** Telomere-binding protein *RNA-binding protein ** Poly(A)-binding protein ** ...
of the plant, thereby getting carried into the cell. A
germ tube A germ tube is an outgrowth produced by spores of spore-releasing fungi during germination. The germ tube differentiates, grows, and develops by mitosis to create somatic hyphae.C.J. Alexopolous, Charles W. Mims, M. Blackwell, ''Introductory My ...
is formed during germination of the zoospore which typically gives rise to an appressorium.Latijnhouwers, Maita, Pierre J.G.M. De Wit, and Francine Govers. "Oomycetes and Fungi: Similar Weaponry to Attack Plants." Cell Press 11.10 (2003): 462-69. These structures penetrate the
epidermal The epidermis is the outermost of the three layers that comprise the skin, the inner layers being the dermis and hypodermis. The epidermis layer provides a barrier to infection from environmental pathogens and regulates the amount of water relea ...
cells of the plant’s tissue and form
haustoria In botany and mycology, a haustorium (plural haustoria) is a rootlike structure that grows into or around another structure to absorb water or nutrients. For example, in mistletoe or members of the broomrape family, the structure penetrates th ...
. Haustoria invade the plant intracellularly to retrieve nutrients while further dispersing the pathogen within the host. Chlamydospores that survive in the soil produce mycelia that can also infect plant structures. Infections of stems and branches lead to the formation of cankers while infections on cocoa pods cause pod rot. The development of cankers has also been associated with insects that burrow into the bark of cocoa trees.


Environment

''Phytophthora'' spp. occur wherever cocoa is grown and is the most economically detrimental pathogen of cocoa in West Africa where the two species ''P. megakarya'' and '' P. palmivora'' dominate.Prabha, K Peter and R. Chandramohanan (2014). Integrated management of black pod disease caused by ''Phytophthora palmivora''. Research article, International Journal of Plant Protection, Volume 7 issue 1. West Africa’s environment is characterized by a dry season from November until February.Agriculture and Consumer Protection. Integrating crops and wildlife in West Africa. Chapter 1. http://www.fao.org/docrep/004/x6543e/x6543e01.htm During this time, moisture-laden air from the equator moves in, providing ideal moisture conditions for the growth of both cocoa trees and ''P. megakarya''. Cocoa is known to grow well in countries that occur in the subhumid zone, primarily in the forested areas of the countries. The forested regions of West Africa near the equator receive 1500mm to 2000mm of rain; cocoa is planted in these areas where the forest is cleared. Since ''P. megakarya'' favors wet conditions, these forested regions are ideal during the wet seasons. ''P. megakarya'' survives in the soil during elongated dry periods. When the conditions are right, zoospores swim toward the surface of the soil where a fine aerosol is produced in the presence of water to transport the spores to the pods. In comparison to ''P. palmivora'', ''P. megakarya'' is able to produce greater quantities of inoculum more quickly and can distribute it earlier in the season; thus it may infect more pods in a shorter time than ''P. palmivora''.


Management


Chemical control

Chemical control is often necessary to conserve yield, although it can come at a very high price. Chemical control targets the initial inoculum, reducing the amount of
mycelium Mycelium (plural mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Fungal colonies composed of mycelium are found in and on soil and many other substrates. A typical single spore germinates ...
and sporangia present. In west Africa chemicals are applied using spray tanks. Fungicides such as
copper oxychloride Dicopper chloride trihydroxide is the chemical compound with the formula Cu2(OH)3Cl. It is often referred to as tribasic copper chloride (TBCC), copper trihydroxyl chloride or copper hydroxychloride. It is a greenish crystalline solid encount ...
,
Mancozeb Mancozeb is a dithiocarbamate non-systemic agricultural fungicide with multi-site, protective action on contact. It is a combination of two other dithiocarbamates: maneb and zineb. The mixture controls many fungal diseases in a wide range of f ...
, and
Metalaxyl Metalaxyl is an acylalanine fungicide with systemic function. Its chemical name is methyl N-(methoxyacetyl)-N-(2,6-xylyl)-DL-alaninate. It can be used to control ''Pythium'' in a number of vegetable crops, and ''Phytophthora'' in peas. Metalaxyl- ...
+Mancozeb are typically used.Prabha, K Peter and R. Chandramohanan (2014). Integrated management of black pod disease caused by ''Phytophthora palmivora''. Research article, International Journal of Plant Protection, Volume 7 issue 1. Mixtures of these chemicals can be used to prevent the pathogen from acquiring resistance to certain chemical compounds. Many of these fungicides contain heavy metals which can be damaging to the environment. Spraying is recommended 4-6 times a year from the last week of May to the end of the growing period. Overuse of chemicals will result in increasing amounts of heavy metals being absorbed into the environment.


Cultural control

Cultural practices not only reduce the incidence of disease but also allow for better use of chemical control. If the disease is not causing much damage, cultural control alone may be sufficient. Removal of infected plant parts reduces sporangial inoculum and is an effective cultural control.
Weeding Weed control is a type of pest control, which attempts to stop or reduce growth of weeds, especially noxious weeds, with the aim of reducing their competition with desired flora and fauna including domesticated plants and livestock, and in natu ...
reduces the humidity of the surrounding air which is unfavorable for the production of sporangia. Frequently harvesting the pods reduces the amount of sporangial inoculum. Another form of cultural control is the burning of the pod husk piles to destroy additional sources of chlamydospores and sporangia. These cultural practices can limit disease caused by ''P. megakarya'' significantly.


Biological control

In certain regions of Africa, ''
Trichoderma asperellum ''Trichoderma asperellum'' Samuels, Lieckf & Nirenberg Samuels, G.J.; Lieckfeldt, E.; Nirenberg, H.I. (1999) ''Trichoderma asperellum'', a new species with warted conidia, and redescription of ''T. viride''. ''Sydowia'' 51(1):71–88 is a species ...
'' is used as a biological control agent. It is applied as a wettable powder, containing
cassava ''Manihot esculenta'', commonly called cassava (), manioc, or yuca (among numerous regional names), is a woody shrub of the spurge family, Euphorbiaceae, native to South America. Although a perennial plant, cassava is extensively cultivated ...
flour and ''T. asperellum.'' Though this method has shown positive results, the formulation is not practical for such a wet, tropical region. Research is being done into examining different formulations that can more effectively be applied.


Genetic resistance

Choosing a resistant variety of plant is an effective method of minimizing the damage of ''P. megakarya''. Breeding for resistance for either ''P. palmivora'' or ''P. megakarya'' will increase the plant's resistance to both pathogens simultaneously. Much of the current research into ''P. megakarya'' and black pod disease is looking at the cellular processes involved in infection. Through the examination and understanding of these processes, researchers can alter the genetic makeup of ''T. cacao'' trees in hopes of more effectively controlling the spread of black pod disease. Growing a cocoa variety with resistance can also increase the effectiveness of chemical applications. Resistance will also reduce the quantity of infectious plants, thereby reducing the amount of cultural control required.


Importance

''Phytophthora megakarya'' is the most important cocoa pathogen in central and west Africa. It is endemic to
Cameroon Cameroon (; french: Cameroun, ff, Kamerun), officially the Republic of Cameroon (french: République du Cameroun, links=no), is a country in west-central Africa. It is bordered by Nigeria to the west and north; Chad to the northeast; the C ...
,
Nigeria Nigeria ( ), , ig, Naìjíríyà, yo, Nàìjíríà, pcm, Naijá , ff, Naajeeriya, kcg, Naijeriya officially the Federal Republic of Nigeria, is a country in West Africa. It is situated between the Sahel to the north and the Gulf o ...
, and
Ghana Ghana (; tw, Gaana, ee, Gana), officially the Republic of Ghana, is a country in West Africa. It abuts the Gulf of Guinea and the Atlantic Ocean to the south, sharing borders with Ivory Coast in the west, Burkina Faso in the north, and To ...
and is present as an invasive pathogen in Côte d'Ivoire.David Guest, (2006). “Black Pod: Diverse Pathogens with a Global Impact on Cocoa Yield” Cacao Diseases: Important Threats to Chocolate Production Worldwide These countries account for four of the top ten world producers of cocoa, Côte d'Ivoire being the number one producer worldwide."Top 10 Cocoa Producing Countries." WorldAtlas. 22 Apr. 2015. Web. 22 Oct. 2015. In some cases, when left untreated, the pathogen has led to an 80% loss of cocoa pods.Djiekpor EK, Goka K, Lucas P, Partiot M, (1981). Cocoa black pod rot caused by ''Phytophthora'' sp. in Togo: assessment and control strategies. Cafe Cacao The, 25(4):263-268 However, the infection may not always be localized on the pods. Cankers formed on the bark of the cocoa trees lead to a reduction of tree vigor and total yield, and in extreme cases, result in a 10% loss of trees annually. As the trees age pod production decreases; warnings of
chocolate Chocolate is a food made from roasted and ground cacao seed kernels that is available as a liquid, solid, or paste, either on its own or as a flavoring agent in other foods. Cacao has been consumed in some form since at least the Olmec civ ...
shortages as soon as 2020 have been predicted based on the combination of these factors.Ford, Tamasin, Jonathan Vit, Rupert Neate, Tania Branigan, and Emine Saner. "The Cocoa Crisis: Why the World's Stash of Chocolate Is Melting Away." The Guardian. 21 Nov. 2014. Web. 21 Oct. 2015.


References


External links


Index Fungorum

USDA ARS Fungal Database
{{DEFAULTSORT:Phytophthora Megakarya megakarya Water mould plant pathogens and diseases Cacao diseases