Chemical ionization
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Chemical ionization (CI) is a soft ionization technique used in
mass spectrometry Mass spectrometry (MS) is an analytical technique that is used to measure the mass-to-charge ratio of ions. The results are presented as a ''mass spectrum'', a plot of intensity as a function of the mass-to-charge ratio. Mass spectrometry is use ...
. This was first introduced by Burnaby Munson and
Frank H. Field Frank Henry Field (February 27, 1922 – April 12, 2013) was an American chemist and mass spectrometrist known for his work in the development of chemical ionization. Early life and education Frank Field was born in Keansburg, New Jersey, on Febru ...
in 1966. This technique is a branch of gaseous ion-molecule chemistry. Reagent gas molecules (often methane or ammonia) are ionized by electron ionization to form reagent ions, which subsequently react with analyte molecules in the gas phase to create analyte ions for analysis by mass spectrometry. Negative chemical ionization (NCI), charge-exchange chemical ionization,
atmospheric-pressure chemical ionization Atmospheric pressure chemical ionization (APCI) is an ionization method used in mass spectrometry which utilizes gas-phase ion-molecule reactions at atmospheric pressure (105 Pa), commonly coupled with high-performance liquid chromatography (HPLC ...
(APCI) and
atmospheric pressure photoionization Atmospheric pressure photoionization (APPI) is a soft ionization method used in mass spectrometry (MS) usually coupled to liquid chromatography (LC). Molecules are ionized using a vacuum ultraviolet (VUV) light source operating at atmospheric pre ...
(APPI) are some of the common variants of the technique. CI mass spectrometry finds general application in the identification, structure elucidation and
quantitation In mathematics and empirical science, quantification (or quantitation) is the act of counting and measuring that maps human sense observations and experiences into quantities. Quantification in this sense is fundamental to the scientific method. ...
of organic compounds as well as some utility in biochemical analysis. Samples to be analyzed must be in vapour form, or else (in the case of liquids or solids), must be vapourized before introduction into the source.


Principles of operation

The chemical ionization process generally imparts less energy to an analyte molecule than does
electron impact Electron ionization (EI, formerly known as electron impact ionization and electron bombardment ionization) is an ionization method in which energetic electrons interact with solid or gas phase atoms or molecules to produce ions. EI was one of th ...
(EI) ionization, resulting in less fragmentation and usually a simpler
spectrum A spectrum (plural ''spectra'' or ''spectrums'') is a condition that is not limited to a specific set of values but can vary, without gaps, across a continuum. The word was first used scientifically in optics to describe the rainbow of colors i ...
. The amount of fragmentation, and therefore the amount of structural information produced by the process can be controlled to some degree by selection of the reagent ion. In addition to some characteristic fragment ion peaks, a CI spectrum usually has an identifiable protonated
molecular ion Mass spectral interpretation is the method employed to identify the chemical formula, characteristic fragment patterns and possible fragment ions from the mass spectra. Mass spectra is a plot of relative abundance against mass-to-charge ratio. It i ...
peak +1sup>+, allowing determination of the
molecular mass The molecular mass (''m'') is the mass of a given molecule: it is measured in daltons (Da or u). Different molecules of the same compound may have different molecular masses because they contain different isotopes of an element. The related quanti ...
. CI is thus useful as an alternative technique in cases where EI produces excessive fragmentation of the analyte, causing the molecular-ion peak to be weak or completely absent.


Instrumentation

The CI source design for a mass spectrometer is very similar to that of the EI source. To facilitate the reactions between the ions and molecules, the chamber is kept relatively gas tight at a pressure of about 1 torr. Electrons are produced externally to the source volume (at a lower pressure of 10−4 torr or below) by heating a metal filament which is made of
tungsten Tungsten, or wolfram, is a chemical element with the symbol W and atomic number 74. Tungsten is a rare metal found naturally on Earth almost exclusively as compounds with other elements. It was identified as a new element in 1781 and first isol ...
,
rhenium Rhenium is a chemical element with the symbol Re and atomic number 75. It is a silvery-gray, heavy, third-row transition metal in group 7 of the periodic table. With an estimated average concentration of 1 part per billion (ppb), rhenium is one ...
, or
iridium Iridium is a chemical element with the symbol Ir and atomic number 77. A very hard, brittle, silvery-white transition metal of the platinum group, it is considered the second-densest naturally occurring metal (after osmium) with a density of ...
. The electrons are introduced through a small aperture in the source wall at energies 200-1000 eV so that they penetrate to at least the centre of the box. In contrast to EI, the magnet and the electron trap are not needed for CI, since the electrons do not travel to the end of the chamber. Many modern sources are dual or combination EI/CI sources and can be switched from EI mode to CI mode and back in seconds.


Mechanism

A CI experiment involves the use of gas phase acid-base reactions in the chamber. Some common reagent gases include:
methane Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The relative abundance of methane on Eart ...
,
ammonia Ammonia is an inorganic compound of nitrogen and hydrogen with the formula . A stable binary hydride, and the simplest pnictogen hydride, ammonia is a colourless gas with a distinct pungent smell. Biologically, it is a common nitrogenous was ...
,
water Water (chemical formula ) is an inorganic, transparent, tasteless, odorless, and nearly colorless chemical substance, which is the main constituent of Earth's hydrosphere and the fluids of all known living organisms (in which it acts as a ...
and isobutane. Inside the ion source, the reagent gas is present in large excess compared to the analyte. Electrons entering the source will mainly ionize the reagent gas because it is in large excess compared to the analyte. The primary reagent ions then undergo secondary ion/molecule reactions (as below) to produce more stable reagent ions which ultimately collide and react with the lower concentration analyte molecules to form product ions. The collisions between reagent ions and analyte molecules occur at close to thermal energies, so that the energy available to fragment the analyte ions is limited to the exothermicity of the ion-molecule reaction. For a proton transfer reaction, this is just the difference in proton affinity between the neutral reagent molecule and the neutral analyte molecule. This results in significantly less fragmentation than does 70 eV electron ionization (EI). The following reactions are possible with methane as the reagent gas.


Primary ion formation

:CH4 + e^- -> CH4^ + 2e^-


Secondary reagent ions

:CH4 + CH4^ -> CH5+ + CH3^ :CH4 + CH3^+ -> C2H5+ + H2


Product ion formation

:M + CH5+ -> CH4 + + H    (protonation) :AH + CH3+ -> CH4 + A+    (H^- abstraction) :M + C2H5+ -> + C2H5    (adduct formation) :A + CH4+ -> CH4 + A+    ( charge exchange) If ammonia is the reagent gas, :NH3 + e^- -> NH3^ + 2e^- :NH3 + NH3^ -> NH4+ + NH2 :M + NH4^+ -> MH+ + NH3 For isobutane as the reagent gas, :\ce (\ce \text) :C3H7^+ + C4H10^ -> C4H9^+ + C3H8 :M + C4H9^+ -> MH^+ + C4H8 Self chemical ionization is possible if the reagent ion is an ionized form of the analyte.


Advantages and limitations

One of the main advantages of CI over EI is the reduced fragmentation as noted above, which for more fragile molecules, results in a peak in the mass spectrum indicative of the molecular weight of the analyte. This proves to be a particular advantage for biological applications where EI often does not yield useful molecular ions in the spectrum. The spectra given by CI are simpler than EI spectra and CI can be more sensitive than other ionization methods, at least in part to the reduced fragmentation which concentrates the ion signal in fewer and therefore more intense peaks. The extent of fragmentation can be somewhat controlled by proper selection of reagent gases. Moreover, CI is often be coupled to chromatographic separation techniques, thereby improving its usefulness in identification of compounds. As with EI, the method is limited compounds that can be vapourized in the ion source. The lower degree of fragmentation can be a disadvantage in that less structural information is provided. Additionally, the degree of fragmentation and therefore the mass spectrum, can be sensitive to source conditions such as pressure, temperature, and the presence of impurities (such as water vapour) in the source. Because of this lack of reproducibility, libraries of CI spectra have not been generated for compound identification.


Applications

CI mass spectrometry is a useful tool in structure elucidation of organic compounds. This is possible with CI, because formation of +1sup>+ eliminates a stable molecule, which can be used to guess the functional groups present. Besides that, CI facilitates the ability to detect the molecular ion peak, due to less extensive fragmentation. Chemical ionization can also be used to identify and quantify an analyte present in a sample, by coupling chromatographic separation techniques to CI such as gas chromatography (GC), high performance liquid chromatography (HPLC) and capillary electrophoresis (CE). This allows selective ionization of an analyte from a mixture of compounds, where accurate and precised results can be obtained.


Variants


Negative chemical ionization

Chemical ionization for gas phase analysis is either positive or negative. Almost all neutral analytes can form positive ions through the reactions described above. In order to see a response by negative chemical ionization (NCI, also NICI), the analyte must be capable of producing a negative ion (stabilize a negative charge) for example by
electron capture ionization Electron capture ionization is the ionization of a gas phase atom or molecule by attachment of an electron to create an ion of the form A^-. The reaction is :A + e^- -> ^- where the M over the arrow denotes that to conserve energy and momentum a ...
. Because not all analytes can do this, using NCI provides a certain degree of selectivity that is not available with other, more universal ionization techniques (EI, PCI). NCI can be used for the analysis of compounds containing acidic groups or electronegative elements (especially halogens).Moreover, negative chemical ionization is more selective and demonstrates a higher sensitivity toward oxidizing agents and alkylating agents. Because of the high electronegativity of
halogen The halogens () are a group in the periodic table consisting of five or six chemically related elements: fluorine (F), chlorine (Cl), bromine (Br), iodine (I), astatine (At), and tennessine (Ts). In the modern IUPAC nomenclature, this group is ...
atoms, NCI is a common choice for their analysis. This includes many groups of compounds, such as
PCBs Polychlorinated biphenyls (PCBs) are highly carcinogenic chemical compounds, formerly used in industrial and consumer products, whose production was banned in the United States by the Toxic Substances Control Act in 1979 and internationally by t ...
,
pesticides Pesticides are substances that are meant to control pests. This includes herbicide, insecticide, nematicide, molluscicide, piscicide, avicide, rodenticide, bactericide, insect repellent, animal repellent, microbicide, fungicide, and lampric ...
, and
fire retardant A fire retardant is a substance that is used to slow down or stop the spread of fire or reduce its intensity. This is commonly accomplished by chemical reactions that reduce the flammability of fuels or delay their combustion. Fire retardants m ...
s. Most of these compounds are environmental contaminants, thus much of the NCI analysis that takes place is done under the auspices of environmental analysis. In cases where very low limits of detection are needed, environmental toxic substances such as halogenated species, oxidizing and alkylating agents are frequently analyzed using an electron capture detector coupled to a
gas chromatograph Gas chromatography (GC) is a common type of chromatography used in analytical chemistry for separating and analyzing compounds that can be vaporized without decomposition. Typical uses of GC include testing the purity of a particular substance, ...
. Negative ions are formed by resonance capture of a near-thermal energy electron, dissociative capture of a low energy electron and via ion-molecular interactions such as proton transfer, charge transfer and hydride transfer. Compared to the other methods involving negative ion techniques, NCI is quite advantageous, as the reactivity of anions can be monitored in the absence of a solvent. Electron affinities and energies of low-lying valencies can be determined by this technique as well.


Charge-exchange chemical ionization

This is also similar to CI and the difference lies in the production of a radical cation with an odd number of electrons. The reagent gas molecules are bombarded with high energy electrons and the product reagent gas ions abstract electrons from the analyte to form radical cations. The common reagent gases used for this technique are toluene, benzene, NO, Xe, Ar and He. Careful control over the selection of reagent gases and the consideration toward the difference between the resonance energy of the reagent gas radical cation and the ionization energy of the analyte can be used to control fragmentation. The reactions for charge-exchange chemical ionization are as follows. : He + e^- -> He^ + 2e^- : He^ + M -> M^


Atmospheric-pressure chemical ionization

Chemical ionization in an atmospheric pressure electric discharge is called
atmospheric pressure chemical ionization Atmospheric pressure chemical ionization (APCI) is an ionization method used in mass spectrometry which utilizes gas-phase ion-molecule reactions at atmospheric pressure (105 Pa), commonly coupled with high-performance liquid chromatography (HPLC ...
(APCI), which usually uses water as the reagent gas. An APCI source is composed of a
liquid chromatography In chemical analysis, chromatography is a laboratory technique for the separation of a mixture into its components. The mixture is dissolved in a fluid solvent (gas or liquid) called the ''mobile phase'', which carries it through a system (a ...
outlet, nebulizing the eluent, a heated vaporizer tube, a corona discharge needle and a pinhole entrance to 10−3 torr vacuum. The analyte is a gas or liquid spray and ionization is accomplished using an atmospheric pressure corona discharge. This ionization method is often coupled with high performance liquid chromatography where the mobile phase containing eluting analyte sprayed with high flow rates of
nitrogen Nitrogen is the chemical element with the symbol N and atomic number 7. Nitrogen is a nonmetal and the lightest member of group 15 of the periodic table, often called the pnictogens. It is a common element in the universe, estimated at se ...
or
helium Helium (from el, ἥλιος, helios, lit=sun) is a chemical element with the symbol He and atomic number 2. It is a colorless, odorless, tasteless, non-toxic, inert, monatomic gas and the first in the noble gas group in the periodic table. ...
and the aerosol spray is subjected to a corona discharge to create ions. It is applicable to relatively less polar and thermally less stable compounds. The difference between APCI and CI is that APCI functions under atmospheric pressure, where the frequency of collisions is higher. This enables the improvement in sensitivity and ionization efficiency.


See also

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Proton-transfer-reaction mass spectrometry Proton-transfer-reaction mass spectrometry (PTR-MS) is an analytical chemistry technique that uses gas phase hydronium reagent ions which are produced in an ion source. PTR-MS is used for online monitoring of volatile organic compounds (VOCs) in a ...
*
Electrospray ionization Electrospray ionization (ESI) is a technique used in mass spectrometry to produce ions using an electrospray in which a high voltage is applied to a liquid to create an aerosol. It is especially useful in producing ions from macromolecules becaus ...


References


Bibliography

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External links


Using Amines as Chemical Ionization Reagents and Building Custom Manifold
{{DEFAULTSORT:Chemical Ionization Ion source Mass spectrometry Scientific techniques