Allopatric
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Allopatric speciation () – also referred to as geographic speciation, vicariant speciation, or its earlier name the dumbbell model – is a mode of
speciation Speciation is the evolutionary process by which populations evolve to become distinct species. The biologist Orator F. Cook coined the term in 1906 for cladogenesis, the splitting of lineages, as opposed to anagenesis, phyletic evolution withi ...
that occurs when biological populations become geographically isolated from each other to an extent that prevents or interferes with
gene flow In population genetics, gene flow (also known as gene migration or geneflow and allele flow) is the transfer of genetic material from one population to another. If the rate of gene flow is high enough, then two populations will have equivalent a ...
. Various geographic changes can arise such as the movement of continents, and the formation of mountains, islands, bodies of water, or glaciers. Human activity such as agriculture or developments can also change the distribution of species populations. These factors can substantially alter a region's geography, resulting in the separation of a species population into isolated subpopulations. The vicariant populations then undergo genetic changes as they become subjected to different selective pressures, experience
genetic drift Genetic drift, also known as allelic drift or the Wright effect, is the change in the frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene variants to disappear completely and there ...
, and accumulate different
mutation In biology, a mutation is an alteration in the nucleic acid sequence of the genome of an organism, virus, or extrachromosomal DNA. Viral genomes contain either DNA or RNA. Mutations result from errors during DNA or viral replication, m ...
s in the separated populations'
gene pool The gene pool is the set of all genes, or genetic information, in any population, usually of a particular species. Description A large gene pool indicates extensive genetic diversity, which is associated with robust populations that can surv ...
s. The barriers prevent the exchange of genetic information between the two populations leading to reproductive isolation. If the two populations come into contact they will be unable to reproduce—effectively speciating. Other isolating factors such as population dispersal leading to emigration can cause speciation (for instance, the dispersal and isolation of a species on an oceanic island) and is considered a special case of allopatric speciation called peripatric speciation. Allopatric speciation is typically subdivided into two major models: vicariance and peripatric. Both models differ from one another by virtue of their population sizes and geographic isolating mechanisms. The terms ''allopatry'' and ''vicariance'' are often used in
biogeography Biogeography is the study of the distribution of species and ecosystems in geographic space and through geological time. Organisms and biological communities often vary in a regular fashion along geographic gradients of latitude, elevation, ...
to describe the relationship between
organism In biology, an organism () is any living system that functions as an individual entity. All organisms are composed of cells ( cell theory). Organisms are classified by taxonomy into groups such as multicellular animals, plants, and fu ...
s whose ranges do not significantly overlap but are immediately adjacent to each other—they do not occur together or only occur within a narrow zone of contact. Historically, the language used to refer to modes of speciation directly reflected biogeographical distributions. As such, allopatry is a geographical distribution opposed to sympatry (speciation within the same area). Furthermore, the terms allopatric, vicariant, and geographical speciation are often used interchangeably in the scientific literature. This article will follow a similar theme, with the exception of special cases such as peripatric, centrifugal, among others. Observation of nature creates difficulties in witnessing allopatric speciation from "start-to-finish" as it operates as a dynamic process. From this arises a host of various issues in defining species, defining isolating barriers, measuring reproductive isolation, among others. Nevertheless, verbal and mathematical models, laboratory experiments, and empirical evidence overwhelmingly supports the occurrence of allopatric speciation in nature. Mathematical modeling of the genetic basis of reproductive isolation supports the plausibility of allopatric speciation; whereas laboratory experiments of ''
Drosophila ''Drosophila'' () is a genus of flies, belonging to the family Drosophilidae, whose members are often called "small fruit flies" or (less frequently) pomace flies, vinegar flies, or wine flies, a reference to the characteristic of many speci ...
'' and other animal and plant species have confirmed that reproductive isolation evolves as a byproduct of
natural selection Natural selection is the differential survival and reproduction of individuals due to differences in phenotype. It is a key mechanism of evolution, the change in the heritable traits characteristic of a population over generations. Cha ...
.


Vicariance model

The notion of vicariant evolution was first developed by
Léon Croizat Léon Camille Marius Croizat (July 16, 1894 – November 30, 1982) was a French-Italian scholar and botanist who developed an orthogenetic synthesis of evolution of biological form over space, in time, which he called panbiogeography. Life Cr ...
in the mid-twentieth century. The Vicariance theory, which showed coherence along with the acceptance of plate tectonics in the 1960s, was developed in the early 1950s by this Venezuelan botanist, who had found an explanation to the existence of American and Africa similar plants, by deducing that they had originally been a single population before the two continents drifted apart. Currently, speciation by vicariance is widely regarded as the most common form of speciation; and is the primary model of allopatric speciation. Vicariance is a process by which the geographical range of an individual
taxon In biology, a taxon ( back-formation from '' taxonomy''; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular n ...
, or a whole biota, is split into discontinuous populations ( disjunct distributions) by the formation of an extrinsic barrier to the exchange of genes: that is, a barrier arising externally to a species. These extrinsic barriers often arise from various
geologic Geology () is a branch of natural science concerned with Earth and other astronomical objects, the features or rocks of which it is composed, and the processes by which they change over time. Modern geology significantly overlaps all other E ...
-caused,
topographic Topography is the study of the forms and features of land surfaces. The topography of an area may refer to the land forms and features themselves, or a description or depiction in maps. Topography is a field of geoscience and planetary scie ...
changes such as: the formation of mountains (
orogeny Orogeny is a mountain building process. An orogeny is an event that takes place at a convergent plate margin when plate motion compresses the margin. An '' orogenic belt'' or ''orogen'' develops as the compressed plate crumples and is uplifted ...
); the formation of rivers or bodies of water;
glaciation A glacial period (alternatively glacial or glaciation) is an interval of time (thousands of years) within an ice age that is marked by colder temperatures and glacier advances. Interglacials, on the other hand, are periods of warmer climate bet ...
; the formation or elimination of land bridges; the movement of continents over time (by
tectonic plates Plate tectonics (from the la, label=Late Latin, tectonicus, from the grc, τεκτονικός, lit=pertaining to building) is the generally accepted scientific theory that considers the Earth's lithosphere to comprise a number of large ...
); or island formation, including sky islands. Vicariant barriers can change the distribution of species populations. Suitable or unsuitable habitat may be come into existence, expand, contract, or disappear as a result of global climate change or even large scale human activities (for example, agricultural, civil engineering developments, and
habitat fragmentation Habitat fragmentation describes the emergence of discontinuities (fragmentation) in an organism's preferred environment (habitat), causing population fragmentation and ecosystem decay. Causes of habitat fragmentation include geological process ...
). Such factors can alter a region's geography in substantial ways, resulting in the separation of a species population into isolated subpopulations. The vicariant populations may then undergo genotypic or
phenotypic In genetics, the phenotype () is the set of observable characteristics or traits of an organism. The term covers the organism's morphology or physical form and structure, its developmental processes, its biochemical and physiological pr ...
divergence as: (a) different
mutation In biology, a mutation is an alteration in the nucleic acid sequence of the genome of an organism, virus, or extrachromosomal DNA. Viral genomes contain either DNA or RNA. Mutations result from errors during DNA or viral replication, m ...
s arise in the
gene pool The gene pool is the set of all genes, or genetic information, in any population, usually of a particular species. Description A large gene pool indicates extensive genetic diversity, which is associated with robust populations that can surv ...
s of the populations, (b) they become subjected to different selective pressures, and/or (c) they independently undergo
genetic drift Genetic drift, also known as allelic drift or the Wright effect, is the change in the frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene variants to disappear completely and there ...
. The extrinsic barriers prevent the exchange of genetic information between the two populations, potentially leading to differentiation due to the ecologically different habitats they experience; selective pressure then invariably leads to complete reproductive isolation. Furthermore, a species' proclivity to remain in its
ecological niche In ecology, a niche is the match of a species to a specific environmental condition. Three variants of ecological niche are described by It describes how an organism or population responds to the distribution of resources and competitors (for ...
(see
phylogenetic niche conservatism The term phylogenetic niche conservatism has seen increasing use in recent years in the scientific literature, though the exact definition has been a matter of some contention. Fundamentally, phylogenetic niche conservatism refers to the tendency ...
) through changing environmental conditions may also play a role in isolating populations from one another, driving the evolution of new lineages. Allopatric speciation can be represented as the extreme on a
gene flow In population genetics, gene flow (also known as gene migration or geneflow and allele flow) is the transfer of genetic material from one population to another. If the rate of gene flow is high enough, then two populations will have equivalent a ...
continuum. As such, the level of gene flow between populations in allopatry would be m=0, where m equals the rate of gene exchange. In sympatry m=0.5 (panmixis), while in parapatric speciation, 0 < m < 0.5 represents the entire continuum, although some scientists argue that a classification scheme based solely on geographic mode does not necessarily reflect the complexity of speciation. Allopatry is often regarded as the default or "null" model of speciation, but this too is debated.


Reproductive isolation

Reproductive isolation acts as the primary mechanism driving genetic divergence in allopatry and can be amplified by divergent selection. Pre-zygotic and post-zygotic isolation are often the most cited mechanisms for allopatric speciation, and as such, it is difficult to determine which form evolved first in an allopatric speciation event. Pre-zygotic simply implies the presence of a barrier prior to any act of fertilization (such as an environmental barrier dividing two populations), while post-zygotic implies the prevention of successful inter-population crossing after fertilization (such as the production of an infertile hybrid). Since species pairs who diverged in allopatry often exhibit pre- and post-zygotic isolation mechanisms, investigation of the earliest stages in the life cycle of the species can indicate whether or not divergence occurred due to a pre-zygotic or post-zygotic factor. However, establishing the specific mechanism may not be accurate, as a species pair continually diverges over time. For example, if a plant experiences a chromosome duplication event, reproduction will occur, but
sterile Sterile or sterility may refer to: *Asepsis Asepsis is the state of being free from disease-causing micro-organisms (such as pathogenic bacteria, viruses, pathogenic fungi, and parasites). There are two categories of asepsis: medical and surgi ...
hybrids will result—functioning as a form of post-zygotic isolation. Subsequently, the newly formed species pair may experience pre-zygotic barriers to reproduction as selection, acting on each species independently, will ultimately lead to genetic changes making hybrids impossible. From the researcher's perspective, the current isolating mechanism may not reflect the past isolating mechanism.


Reinforcement

Reinforcement has been a contentious factor in speciation. It is more often invoked in
sympatric speciation Sympatric speciation is the evolution of a new species from a surviving ancestral species while both continue to inhabit the same geographic region. In evolutionary biology and biogeography, sympatric and sympatry are terms referring to organi ...
studies, as it requires gene flow between two populations. However, reinforcement may also play a role in allopatric speciation, whereby the reproductive barrier is removed, reuniting the two previously isolated populations. Upon
secondary contact Secondary contact is the process in which two allopatricaly distributed populations of a species are geographically reunited. This contact allows for the potential for the exchange of genes, dependent on how reproductively isolated the two popula ...
, individuals reproduce, creating low- fitness hybrids. Traits of the hybrids drive individuals to discriminate in mate choice, by which pre-zygotic isolation increases between the populations. Some arguments have been put forth that suggest the hybrids themselves can possibly become their own species: known as hybrid speciation. Reinforcement can play a role in all geographic modes (and other non-geographic modes) of speciation as long as gene flow is present and viable hybrids can be formed. The production of inviable hybrids is a form of
reproductive character displacement Character displacement is the phenomenon where differences among similar species whose distributions overlap geographically are accentuated in regions where the species co-occur, but are minimized or lost where the species' distributions do not o ...
, under which most definitions is the completion of a speciation event. Research has well established the fact that interspecific mate discrimination occurs to a greater extent between sympatric populations than it does in purely allopatric populations; however, other factors have been proposed to account for the observed patterns. Reinforcement in allopatry has been shown to occur in nature (
evidence for speciation by reinforcement Reinforcement is a process within speciation where natural selection increases the reproductive isolation between two populations of species by reducing the production of hybrids. Evidence for speciation by reinforcement has been gathered sinc ...
), albeit with less frequency than a classic allopatric speciation event. A major difficulty arises when interpreting reinforcement's role in allopatric speciation, as current
phylogenetic In biology, phylogenetics (; from Greek φυλή/ φῦλον [] "tribe, clan, race", and wikt:γενετικός, γενετικός [] "origin, source, birth") is the study of the evolutionary history and relationships among or within groups ...
patterns may suggest past gene flow. This masks possible initial divergence in allopatry and can indicate a "mixed-mode" speciation event—exhibiting both allopatric and sympatric speciation processes.


Mathematical models

Developed in the context of the genetic basis of reproductive isolation, mathematical scenarios model both pre zygotic and postzygotic isolation with respect to the effects of genetic drift, selection,
sexual selection Sexual selection is a mode of natural selection in which members of one biological sex choose mates of the other sex to mate with (intersexual selection), and compete with members of the same sex for access to members of the opposite sex (in ...
, or various combinations of the three. Masatoshi Nei and colleagues were the first to develop a neutral,
stochastic Stochastic (, ) refers to the property of being well described by a random probability distribution. Although stochasticity and randomness are distinct in that the former refers to a modeling approach and the latter refers to phenomena themselv ...
model of speciation by genetic drift alone. Both selection and drift can lead to postzygotic isolation, supporting the fact that two geographically separated populations can evolve reproductive isolation—sometimes occurring rapidly. Fisherian sexual selection can also lead to reproductive isolation if there are minor variations in selective pressures (such as predation risks or habitat differences) among each population. (See the Further reading section below). Mathematical models concerning reproductive isolation-by distance have shown that populations can experience increasing reproductive isolation that correlates directly with physical, geographical distance. This has been exemplified in models of ring species; however, it has been argued that ring species are a special case, representing reproductive isolation-by distance, and demonstrate parapatric speciation instead—as parapatric speciation represents speciation occurring along a cline.


Other models

Various alternative models have been developed concerning allopatric speciation. Special cases of vicariant speciation have been studied in great detail, one of which is peripatric speciation, whereby a small subset of a species population becomes isolated geographically; and centrifugal speciation, an alternative model of peripatric speciation concerning expansion and contraction of a species' range. Other minor allopatric models have also been developed are discussed below.


Peripatric

Peripatric speciation is a mode of speciation in which a new species is formed from an isolated peripheral population. If a small population of a species becomes isolated (''e.g.'' a population of birds on an oceanic island), selection can act on the population independent of the parent population. Given both geographic separation and enough time, speciation can result as a byproduct. It can be distinguished from allopatric speciation by three important features: 1) the size of the isolated population, 2) the strong selection imposed by the dispersal and colonization into novel environments, and 3) the potential effects of
genetic drift Genetic drift, also known as allelic drift or the Wright effect, is the change in the frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene variants to disappear completely and there ...
on small populations. However, it can often be difficult for researchers to determine if peripatric speciation occurred as vicariant explanations can be invoked due to the fact that both models posit the absence of gene flow between the populations. The size of the isolated population is important because individuals colonizing a new habitat likely contain only a small sample of the genetic variation of the original population. This promotes divergence due to strong selective pressures, leading to the rapid fixation of an
allele An allele (, ; ; modern formation from Greek ἄλλος ''állos'', "other") is a variation of the same sequence of nucleotides at the same place on a long DNA molecule, as described in leading textbooks on genetics and evolution. ::"The chrom ...
within the descendant population. This gives rise to the potential for genetic incompatibilities to evolve. These incompatibilities cause reproductive isolation, giving rise to rapid speciation events. Models of peripatry are supported mostly by species distribution patterns in nature. Oceanic islands and
archipelago An archipelago ( ), sometimes called an island group or island chain, is a chain, cluster, or collection of islands, or sometimes a sea containing a small number of scattered islands. Examples of archipelagos include: the Indonesian Arch ...
s provide the strongest empirical evidence that peripatric speciation occurs.


Centrifugal

Centrifugal speciation is a variant, alternative model of peripatric speciation. This model contrasts with peripatric speciation by virtue of the origin of the genetic novelty that leads to reproductive isolation. When a population of a species experiences a period of geographic range expansion and contraction, it may leave small, fragmented, peripherally isolated populations behind. These isolated populations will contain samples of the genetic variation from the larger parent population. This variation leads to a higher likelihood of ecological niche specialization and the evolution of reproductive isolation. Centrifugal speciation has been largely ignored in the scientific literature. Nevertheless, a wealth of evidence has been put forth by researchers in support of the model, much of which has not yet been refuted. One example is the possible center of origin in the Indo-West Pacific.


Microallopatric

Microallopatry refers to allopatric speciation occurring on a small geographic scale. Examples of microallopatric speciation in nature have been described. Rico and Turner found intralacustrine allopatric divergence of '' Pseudotropheus callainos'' (''Maylandia callainos'') within
Lake Malawi Lake Malawi, also known as Lake Nyasa in Tanzania and Lago Niassa in Mozambique, is an African Great Lake and the southernmost lake in the East African Rift system, located between Malawi, Mozambique and Tanzania. It is the fifth largest f ...
separated only by 35 meters. Gustave Paulay found evidence that species in the subfamily Cryptorhynchinae have microallopatrically speciated on Rapa and its surrounding islets. A sympatrically distributed triplet of
diving beetle The Dytiscidae – based on the Greek ''dytikos'' (δυτικός), "able to dive" – are the predaceous diving beetles, a family of water beetles. They occur in virtually any freshwater habitat around the world, but a few species live a ...
('' Paroster'') species living in aquifers of Australia's Yilgarn region have likely speciated microallopatrically within a 3.5 km2 area. The term was originally proposed by
Hobart M. Smith Hobart Muir Smith, born Frederick William Stouffer (September 26, 1912 – March 4, 2013), was an American herpetologist. He is credited with describing more than 100 new species of American reptiles and amphibians. In addition, he has been ...
to describe a level of geographic resolution. A sympatric population may exist in low resolution, whereas viewed with a higher resolution (''i.e.'' on a small, localized scale within the population) it is "microallopatric". Ben Fitzpatrick and colleagues contend that this original definition, "is misleading because it confuses geographical and ecological concepts".


Modes with secondary contact

Ecological speciation can occur allopatrically, sympatrically, or parapatrically; the only requirement being that it occurs as a result of adaptation to different ecological or micro-ecological conditions. Ecological allopatry is a reverse-ordered form of allopatric speciation in conjunction with reinforcement. First, divergent selection separates a non-allopatric population emerging from pre-zygotic barriers, from which genetic differences evolve due to the obstruction of complete gene flow. The terms allo-parapatric and allo-sympatric have been used to describe speciation scenarios where divergence occurs in allopatry but speciation occurs only upon secondary contact. These are effectively models of reinforcement or "mixed-mode" speciation events.


Observational evidence

As allopatric speciation is widely accepted as a common mode of speciation, the scientific literature is abundant with studies documenting its existence. The biologist
Ernst Mayr Ernst Walter Mayr (; 5 July 1904 – 3 February 2005) was one of the 20th century's leading evolutionary biologists. He was also a renowned taxonomist, tropical explorer, ornithologist, philosopher of biology, and historian of science. His ...
was the first to summarize the contemporary literature of the time in 1942 and 1963. Many of the examples he set forth remain conclusive; however, modern research supports geographic speciation with molecular phylogenetics—adding a level of robustness unavailable to early researchers. The most recent thorough treatment of allopatric speciation (and speciation research in general) is Jerry Coyne and
H. Allen Orr H. Allen Orr (born 1960) is the Shirley Cox Kearns Professor of Biology at the University of Rochester. Education and career Orr earned his bachelor's degree in Biology and Philosophy from the College of William and Mary and his Ph.D. in Biology ...
's 2004 publication ''Speciation''. They list six mainstream arguments that lend support to the concept of vicariant speciation: *Closely related species pairs, more often than not, reside in geographic ranges adjacent to one another, separated by a geographic or climatic barrier. *Young species pairs (or sister species) often occur in allopatry, even without a known barrier. *In occurrences where several pairs of related species share a range, they are distributed in abutting patterns, with borders exhibiting zones of hybridization. *In regions where geographic isolation is doubtful, species do not exhibit sister pairs. *Correlation of genetic differences between an array of distantly related species that correspond to known current or historical geographic barriers. *Measures of reproductive isolation increase with the greater geographic distance of separation between two species pairs. (This has been often referred to as reproductive isolation by distance.)


Endemism

Allopatric speciation has resulted in many of the biogeographic and biodiversity patterns found on Earth: on islands, continents, and even among mountains. Islands are often home to species
endemics Endemism is the state of a species being found in a single defined geographic location, such as an island, state, nation, country or other defined zone; organisms that are indigenous to a place are not endemic to it if they are also found else ...
—existing only on an island and nowhere else in the world—with nearly all taxa residing on isolated islands sharing common ancestry with a species on the nearest continent. Not without challenge, there is typically a correlation between island endemics and diversity; that is, that the greater the diversity (species richness) of an island, the greater the increase in endemism. Increased diversity effectively drives speciation. Furthermore, the number of endemics on an island is directly correlated with the relative isolation of the island and its area. In some cases, speciation on islands has occurred rapidly. Dispersal and ''in situ'' speciation are the agents that explain the origins of the organisms in Hawaii. Various geographic modes of speciation have been studied extensively in Hawaiian biota, and in particular,
angiosperm Flowering plants are plants that bear flowers and fruits, and form the clade Angiospermae (), commonly called angiosperms. The term "angiosperm" is derived from the Greek words ('container, vessel') and ('seed'), and refers to those plants ...
s appear to have speciated predominately in allopatric and parapatric modes. Islands are not the only geographic locations that have endemic species. South America has been studied extensively with its areas of endemism representing assemblages of allopatrically distributed species groups. ''Charis'' butterflies are a primary example, confined to specific regions corresponding to phylogenies of other species of butterflies,
amphibian Amphibians are four-limbed and ectothermic vertebrates of the class Amphibia. All living amphibians belong to the group Lissamphibia. They inhabit a wide variety of habitats, with most species living within terrestrial, fossorial, arbo ...
s, birds,
marsupial Marsupials are any members of the mammalian infraclass Marsupialia. All extant marsupials are endemic to Australasia, Wallacea and the Americas. A distinctive characteristic common to most of these species is that the young are carried in ...
s,
primate Primates are a diverse order of mammals. They are divided into the strepsirrhines, which include the lemurs, galagos, and lorisids, and the haplorhines, which include the tarsiers and the simians ( monkeys and apes, the latter includin ...
s,
reptile Reptiles, as most commonly defined are the animals in the class Reptilia ( ), a paraphyletic grouping comprising all sauropsids except birds. Living reptiles comprise turtles, crocodilians, squamates ( lizards and snakes) and rhynchocephalia ...
s, and
rodent Rodents (from Latin , 'to gnaw') are mammals of the order Rodentia (), which are characterized by a single pair of continuously growing incisors in each of the upper and lower jaws. About 40% of all mammal species are rodents. They are n ...
s. The pattern indicates repeated vicariant speciation events among these groups. It is thought that rivers may play a role as the geographic barriers to ''Charis'', not unlike the river barrier hypothesis used to explain the high rates of diversity in the
Amazon basin The Amazon basin is the part of South America drained by the Amazon River and its tributaries. The Amazon drainage basin covers an area of about , or about 35.5 percent of the South American continent. It is located in the countries of Boli ...
—though this hypothesis has been disputed. Dispersal-mediated allopatric speciation is also thought to be a significant driver of diversification throughout the Neotropics. Patterns of increased endemism at higher elevations on both islands and continents have been documented on a global level. As topographical elevation increases, species become isolated from one another; often constricted to graded zones. This isolation on "mountain top islands" creates barriers to gene flow, encouraging allopatric speciation, and generating the formation of endemic species. Mountain building (
orogeny Orogeny is a mountain building process. An orogeny is an event that takes place at a convergent plate margin when plate motion compresses the margin. An '' orogenic belt'' or ''orogen'' develops as the compressed plate crumples and is uplifted ...
) is directly correlated with—and directly affects biodiversity. The formation of the Himalayan mountains and the Qinghai–Tibetan Plateau for example have driven the speciation and diversification of numerous plants and animals such as ''
Lepisorus ''Lepisorus'' is a genus of ferns in the family Polypodiaceae, subfamily Microsoroideae, according to the Pteridophyte Phylogeny Group classification of 2016 (PPG I). Taxonomy ''Lepisorus'' was first described by John Smith in 1846 as the ...
'' ferns; glyptosternoid fishes ( Sisoridae); and the ''
Rana chensinensis The Asiatic grass frog or Chinese brown frog (''Rana chensinensis'') is a species of frog in the family Ranidae, found in China and Mongolia. Its natural habitats are temperate forests, intermittent rivers, swamps, freshwater lakes, inter ...
'' species complex. Uplift has also driven vicariant speciation in '' Macowania'' daisies in South Africa's Drakensberg mountains, along with ''
Dendrocincla ''Dendrocincla'' is a genus of bird in the woodcreeper subfamily (Dendrocolaptinae The woodcreepers (Dendrocolaptinae) comprise a subfamily of suboscine passerine birds endemic to the Neotropics. They have traditionally been considered a dist ...
'' woodcreepers in the South American
Andes The Andes, Andes Mountains or Andean Mountains (; ) are the longest continental mountain range in the world, forming a continuous highland along the western edge of South America. The range is long, wide (widest between 18°S – 20°S ...
. The
Laramide orogeny The Laramide orogeny was a time period of mountain building in western North America, which started in the Late Cretaceous, 70 to 80 million years ago, and ended 35 to 55 million years ago. The exact duration and ages of beginning and end of the ...
during the
Late Cretaceous The Late Cretaceous (100.5–66 Ma) is the younger of two epochs into which the Cretaceous Period is divided in the geologic time scale. Rock strata from this epoch form the Upper Cretaceous Series. The Cretaceous is named after ''creta'', ...
even caused vicariant speciation and radiations of
dinosaur Dinosaurs are a diverse group of reptiles of the clade Dinosauria. They first appeared during the Triassic period, between 243 and 233.23 million years ago (mya), although the exact origin and timing of the evolution of dinosaurs is t ...
s in North America.
Adaptive radiation In evolutionary biology, adaptive radiation is a process in which organisms diversify rapidly from an ancestral species into a multitude of new forms, particularly when a change in the environment makes new resources available, alters biotic in ...
, like the Galapagos finches observed by
Charles Darwin Charles Robert Darwin ( ; 12 February 1809 – 19 April 1882) was an English naturalist, geologist, and biologist, widely known for his contributions to evolutionary biology. His proposition that all species of life have descended ...
, is often a consequence of rapid allopatric speciation among populations. However, in the case of the finches of the Galapagos, among other island radiations such as the honeycreepers of Hawaii represent cases of limited geographic separation and were likely driven by ecological speciation.


Isthmus of Panama

Geological evidence supports the final closure of the isthmus of Panama approximately 2.7 to 3.5 mya, with some evidence suggesting an earlier transient bridge existing between 13 and 15 mya. Recent evidence increasingly points towards an older and more complex emergence of the Isthmus, with fossil and extant species dispersal (part of the American biotic interchange) occurring in three major pulses, to and from North and South America. Further, the changes in terrestrial biotic distributions of both continents such as with ''
Eciton ''Eciton'' is a New World army ant genus that contains the most familiar species of army ants. The most predominant and well-known species is ''Eciton burchellii'', which is also more commonly known as the army ant and is considered the type spec ...
'' army ants supports an earlier bridge or a series of bridges. Regardless of the exact timing of the isthmus closer, biologists can study the species on the Pacific and Caribbean sides in what has been called, "one of the greatest natural experiments in evolution". Additionally, as with most geologic events, the closure was unlikely to have occurred rapidly, but instead dynamically—a gradual shallowing of sea water over millions of years. Studies of snapping shrimp in the genus '' Alpheus'' have provided direct evidence of an allopatric speciation event, as phylogenetic reconstructions support the relationships of 15 pairs of sister species of ''Alpheus'', each pair divided across the isthmus and
molecular clock The molecular clock is a figurative term for a technique that uses the mutation rate of biomolecules to deduce the time in prehistory when two or more life forms diverged. The biomolecular data used for such calculations are usually nucleo ...
dating supports their separation between 3 and 15 million years ago. Recently diverged species live in shallow mangrove waters while older diverged species live in deeper water, correlating with a gradual closure of the isthmus. Support for an allopatric divergence also comes from laboratory experiments on the species pairs showing nearly complete reproductive isolation. Similar patterns of relatedness and distribution across the Pacific and Atlantic sides have been found in other species pairs such as: *'' Diadema antillarum'' and '' Diadema mexicanum'' *''
Echinometra lucunter ''Echinometra lucunter'', the rock boring urchin, is a species of sea urchin in the family Echinometridae. It is found in very shallow parts of the western Atlantic Ocean and the Caribbean Sea. Description ''Echinometra lucunter'' has an elli ...
'' and '' Echinometra vanbrunti'' *''
Echinometra viridis ''Echinometra viridis'', the reef urchin, is a species of sea urchin in the family Echinometridae. It is found on reefs in very shallow parts of the western Atlantic Ocean and the Caribbean Sea. Description The reef urchin has an elliptical ...
'' and ''E. vanbrunti'' *''
Bathygobius soporator The frillfin goby (''Bathygobius soporator'') is a species of marine fish in the genus '' Bathygobius''. Description The frillfin goby is a usually dark colored goby with mottled coloring of black, gray, and tan, but body color is variable betwe ...
'' and '' Bathygobius ramosus'' *''B. soporator'' and '' Bathygobius andrei'' *'' Excirolana braziliensis'' and variant morphs


Refugia

Ice ages have played important roles in facilitating speciation among vertebrate species. This concept of refugia has been applied to numerous groups of species and their biogeographic distributions. Glaciation and subsequent retreat caused speciation in many
boreal forest Taiga (; rus, тайга́, p=tɐjˈɡa; relates to Mongolic and Turkic languages), generally referred to in North America as a boreal forest or snow forest, is a biome characterized by coniferous forests consisting mostly of pines, spruc ...
birds, such as with North American
sapsucker The sapsuckers are species of North American woodpeckers in the genus ''Sphyrapicus''. Taxonomy and systematics The genus ''Sphyrapicus'' was introduced in 1858 by the American naturalist Spencer Baird with the yellow-bellied sapsucker (''Sphyr ...
s ( Yellow-bellied, Red-naped, and Red-breasted); the warblers in the genus '' Setophaga'' ('' S. townsendii'', '' S. occidentalis'', and '' S. virens''), '' Oreothlypis'' ('' O. virginiae'', '' O. ridgwayi'', and '' O. ruficapilla''), and '' Oporornis'' ('' O. tolmiei'' and '' O. philadelphia'' now classified in the genus '' Geothlypis''); ''
Fox sparrow The fox sparrow (''Passerella iliaca'') is a large New World sparrow. It is the only member of the genus ''Passerella'', although some authors split the species into four (see below). Taxonomy More specific information regarding plumage is avai ...
s'' (sub species '' P. (i.) unalaschensis'', '' P. (i.) megarhyncha'', and '' P. (i.) schistacea''); '' Vireo'' ('' V. plumbeus'', '' V. cassinii'', and '' V. solitarius''); '' tyrant flycatchers'' ('' E. occidentalis'' and '' E. difficilis''); '' chickadees'' ('' P. rufescens'' and '' P. hudsonicus''); and '' thrushes'' ('' C. bicknelli'' and '' C. minimus''). As a special case of allopatric speciation, peripatric speciation is often invoked for instances of isolation in glaciation refugia as small populations become isolated due to habitat fragmentation such as with North American red ('' Picea rubens'') and black ('' Picea mariana'') spruce or the prairie dogs ''
Cynomys mexicanus The Mexican prairie dog (''Cynomys mexicanus'') is a diurnal burrowing rodent native to Mexico. Treatment as an agricultural pest has led to its status as an endangered species. They are closely related to squirrels, chipmunks, and marmots. '' ...
'' and '' C. ludovicianus''.


Superspecies

Numerous species pairs or species groups show abutting distribution patterns, that is, reside in geographically distinct regions next to each other. They often share borders, many of which contain hybrid zones. Some examples of abutting species and superspecies (an informal rank referring to a complex of closely related allopatrically distributed species, also called ''allospecies'') include: * Western and Eastern meadowlarks in North America reside in dry western and wet eastern geographic regions with rare occurrences of hybridization, most of which results in infertile offspring. * Monarch flycatchers endemic to the
Solomon Islands Solomon Islands is an island country consisting of six major islands and over 900 smaller islands in Oceania, to the east of Papua New Guinea and north-west of Vanuatu. It has a land area of , and a population of approx. 700,000. Its capit ...
; a complex of several species and
subspecies In biological classification, subspecies is a rank below species, used for populations that live in different areas and vary in size, shape, or other physical characteristics ( morphology), but that can successfully interbreed. Not all specie ...
( Bougainville, white-capped, and chestnut-bellied monarchs and their related subspecies). *North American
sapsucker The sapsuckers are species of North American woodpeckers in the genus ''Sphyrapicus''. Taxonomy and systematics The genus ''Sphyrapicus'' was introduced in 1858 by the American naturalist Spencer Baird with the yellow-bellied sapsucker (''Sphyr ...
s and members of the genus '' Setophaga'' (the
hermit warbler The hermit warbler (''Setophaga occidentalis'') is a small perching bird. It is a species of New World warbler or wood-warbler. They are a migratory bird, the breeding range spanning the majority of the west coast of the United States. Their wint ...
, black-throated green warbler, and Townsend's warbler). *Sixty-six subspecies in the genus Pachycephala residing on the
Melanesia Melanesia (, ) is a subregion of Oceania in the southwestern Pacific Ocean. It extends from Indonesia's New Guinea in the west to Fiji in the east, and includes the Arafura Sea. The region includes the four independent countries of Fiji, V ...
n islands. *
Bonobo The bonobo (; ''Pan paniscus''), also historically called the pygmy chimpanzee and less often the dwarf chimpanzee or gracile chimpanzee, is an endangered great ape and one of the two species making up the genus '' Pan,'' the other being the comm ...
s and
chimpanzee The chimpanzee (''Pan troglodytes''), also known as simply the chimp, is a species of great ape native to the forest and savannah of tropical Africa. It has four confirmed subspecies and a fifth proposed subspecies. When its close relative t ...
s. *''
Climacteris ''Climacteris'' is a genus of bird in the family Climacteridae. These birds and the other members of the family, genus ''Cormobates'', are similar to Northern Hemisphere creepers, Certhiidae, in climbing helically up tree trunks looking for ins ...
'' tree creeper birds in Australia. * Birds-of-paradise in the mountains of New Guinea (genus ''
Astrapia ''Astrapia'' (Vieillot, 1816) is a genus of birds-of-paradise. The genus contains five species, all endemic to New Guinea. The males have highly iridescent plumage and remarkably long tails. Females are duller and have shorter tails. Barnes's a ...
''). *Red-shafted and yellow-shafted flickers; black-headed grosbeaks and rose-breasted grosbeaks; Baltimore orioles and Bullock's orioles; and the lazuli and indigo buntings. All of these species pairs connect at zones of hybridization that correspond with major geographic barriers. *'' Dugesia'' flatworms in Europe, Asia, and the Mediterranean regions. *Dichromatic toucanets of the genus '' Selenidera'' may be a superspecies that arose by the refugia hypothesis in the
Amazon basin The Amazon basin is the part of South America drained by the Amazon River and its tributaries. The Amazon drainage basin covers an area of about , or about 35.5 percent of the South American continent. It is located in the countries of Boli ...
. In birds, some areas are prone to high rates of superspecies formation such as the 105 superspecies in
Melanesia Melanesia (, ) is a subregion of Oceania in the southwestern Pacific Ocean. It extends from Indonesia's New Guinea in the west to Fiji in the east, and includes the Arafura Sea. The region includes the four independent countries of Fiji, V ...
, comprising 66 percent of all bird species in the region. Patagonia is home to 17 superspecies of forest birds, while North America has 127 superspecies of both land and freshwater birds.
Sub-Saharan Africa Sub-Saharan Africa is, geographically, the area and regions of the continent of Africa that lies south of the Sahara. These include West Africa, East Africa, Central Africa, and Southern Africa. Geopolitically, in addition to the List of sov ...
has 486
passerine A passerine () is any bird of the order Passeriformes (; from Latin 'sparrow' and '-shaped'), which includes more than half of all bird species. Sometimes known as perching birds, passerines are distinguished from other orders of birds by th ...
birds grouped into 169 superspecies. Australia has numerous bird superspecies as well, with 34 percent of all bird species grouped into superspecies.


Laboratory evidence

Experiments on allopatric speciation are often complex and do not simply divide a species population into two. This is due to a host of defining parameters: measuring reproductive isolation, sample sizes (the number of matings conducted in reproductive isolation tests), bottlenecks, length of experiments, number of generations allowed, or insufficient genetic diversity. Various isolation indices have been developed to measure reproductive isolation (and are often employed in laboratory speciation studies) such as here (index Y and index I): Y= I= Here, A and D represent the number of matings in heterogameticity where B and C represent homogametic matings. A and B is one population and D and C is the second population. A negative value of Y denotes negative assortive mating, a positive value denotes positive assortive mating (i. e. expressing reproductive isolation), and a null value (of zero) means the populations are experiencing random mating. The experimental evidence has solidly established the fact that reproductive isolation evolves as a by-product of selection. Reproductive isolation has been shown to arise from
pleiotropy Pleiotropy (from Greek , 'more', and , 'way') occurs when one gene influences two or more seemingly unrelated phenotypic traits. Such a gene that exhibits multiple phenotypic expression is called a pleiotropic gene. Mutation in a pleiotropic g ...
(''i.e.'' indirect selection acting on genes that code for more than one trait)—what has been referred to as
genetic hitchhiking Genetic may refer to: * Genetics, in biology, the science of genes, heredity, and the variation of organisms **Genetic, used as an adjective, refers to genes *** Genetic disorder, any disorder caused by a genetic mutation, whether inherited or de ...
. Limitations and controversies exist relating to whether laboratory experiments can accurately reflect the long-scale process of allopatric speciation that occurs in nature. Experiments often fall beneath 100 generations, far less than expected, as rates of speciation in nature are thought to be much larger. Furthermore, rates specifically concerning the evolution of reproductive isolation in ''Drosophila'' are significantly higher than what is practiced in laboratory settings. Using index ''Y'' presented previously, a survey of 25 allopatric speciation experiments (included in the table below) found that reproductive isolation was not as strong as typically maintained and that laboratory environments have not been well-suited for modeling allopatric speciation. Nevertheless, numerous experiments have shown pre-zygotic and post-zygotic isolation in vicariance, some in less than 100 generations. Below is a non-exhaustive table of the laboratory experiments conducted on allopatric speciation. The first column indicates the species used in the referenced study, where the "Trait" column refers to the specific characteristic selected for or against in that species. The "Generations" column refers to the number of generations in each experiment performed. If more than one experiment was formed generations are separated by semicolons or dashes (given as a range). Some studies provide a duration in which the experiment was conducted. The "Selection type" column indicates if the study modeled vicariant or peripatric speciation (this may not be explicitly). Direct selection refers to selection imposed to promote reproductive isolation whereas indirect selection implies isolation occurring as a pleiotropic byproduct of natural selection; whereas divergent selection implies deliberate selection of each allopatric population in opposite directions (''e.g.'' one line with more bristles and the other line with less). Some studies performed experiments modeling or controlling for genetic drift. Reproductive isolation occurred pre-zygotically, post-zygotically, both, or not at all. It is important to note that many of the studies conducted contain multiple experiments within—a resolution of which this table does not reflect.


History and research techniques

Early speciation research typically reflected geographic distributions and were thus termed geographic, semi-geographic, and non-geographic. Geographic speciation corresponds to today's usage of the term allopatric speciation, and in 1868, Moritz Wagner was the first to propose the concept of which he used the term ''Separationstheorie''. His idea was later interpreted by
Ernst Mayr Ernst Walter Mayr (; 5 July 1904 – 3 February 2005) was one of the 20th century's leading evolutionary biologists. He was also a renowned taxonomist, tropical explorer, ornithologist, philosopher of biology, and historian of science. His ...
as a form of founder effect speciation as it focused primarily on small geographically isolated populations.
Edward Bagnall Poulton Sir Edward Bagnall Poulton, FRS HFRSE FLS (27 January 1856 – 20 November 1943) was a British evolutionary biologist, a lifelong advocate of natural selection through a period in which many scientists such as Reginald Punnett doubted its i ...
, an evolutionary biologist and a strong proponent of the importance of natural selection, highlighted the role of geographic isolation in promoting speciation, in the process coining the term "sympatric speciation" in 1903. Controversy exists as to whether
Charles Darwin Charles Robert Darwin ( ; 12 February 1809 – 19 April 1882) was an English naturalist, geologist, and biologist, widely known for his contributions to evolutionary biology. His proposition that all species of life have descended ...
recognized a true geographical-based model of speciation in his publication of the '' Origin of Species''. In chapter 11, "Geographical Distribution", Darwin discusses geographic barriers to migration, stating for example that "barriers of any kind, or obstacles to free migration, are related in a close and important manner to the differences between the productions of various regions f the world. F. J. Sulloway contends that Darwin's position on speciation was "misleading" at the least and may have later misinformed Wagner and
David Starr Jordan David Starr Jordan (January 19, 1851 – September 19, 1931) was the founding president of Stanford University, serving from 1891 to 1913. He was an ichthyologist during his research career. Prior to serving as president of Stanford Univer ...
into believing that Darwin viewed sympatric speciation as the most important mode of speciation. Nevertheless, Darwin never fully accepted Wagner's concept of geographical speciation. David Starr Jordan played a significant role in promoting allopatric speciation in the early 20th century, providing a wealth of evidence from nature to support the theory. Much later, the biologist Ernst Mayr was the first to encapsulate the then contemporary literature in his 1942 publication '' Systematics and the Origin of Species, from the Viewpoint of a Zoologist'' and in his subsequent 1963 publication '' Animal Species and Evolution''. Like Jordan's works, they relied on direct observations of nature, documenting the occurrence of allopatric speciation, of which is widely accepted today. Prior to this research,
Theodosius Dobzhansky Theodosius Grigorievich Dobzhansky (russian: Феодо́сий Григо́рьевич Добржа́нский; uk, Теодо́сій Григо́рович Добржа́нський; January 25, 1900 – December 18, 1975) was a prominent ...
published '' Genetics and the Origin of Species'' in 1937 where he formulated the genetic framework for how speciation could occur. Other scientists noted the existence of allopatrically distributed pairs of species in nature such as Joel Asaph Allen (who coined the term "Jordan's Law", whereby closely related, geographically isolated species are often found divided by a physical barrier) and
Robert Greenleaf Leavitt Dr. Robert Greenleaf Leavitt (1865–1942) was an early American Harvard-educated botanist and widely published author in the field of botany, as well as an early college and high school educator in the natural sciences. Leavitt also worked for ...
; however, it is thought that Wagner, Karl Jordan, and David Starr Jordan played a large role in the formation of allopatric speciation as an evolutionary concept; where Mayr and Dobzhansky contributed to the formation of the modern evolutionary synthesis. The late 20th century saw the development of mathematical models of allopatric speciation, leading to the clear theoretical plausibility that geographic isolation can result in the reproductive isolation of two populations. Since the 1940s, allopatric speciation has been accepted. Today, it is widely regarded as the most common form of speciation taking place in nature. However, this is not without controversy, as both parapatric and sympatric speciation are both considered tenable modes of speciation that occur in nature. Some researchers even consider there to be a bias in reporting of positive allopatric speciation events, and in one study reviewing 73 speciation papers published in 2009, only 30 percent that suggested allopatric speciation as the primary explanation for the patterns observed considered other modes of speciation as possible. Contemporary research relies largely on multiple lines of evidence to determine the mode of a speciation event; that is, determining patterns of geographic distribution in conjunction with phylogenetic relatedness based on molecular techniques. This method was effectively introduced by John D. Lynch in 1986 and numerous researchers have employed it and similar methods, yielding enlightening results. Correlation of geographic distribution with phylogenetic data also spawned a sub-field of biogeography called
vicariance biogeography Allopatric speciation () – also referred to as geographic speciation, vicariant speciation, or its earlier name the dumbbell model – is a mode of speciation that occurs when biological populations become geographically isolated from ...
developed by
Joel Cracraft Joel Lester Cracraft (born July 31, 1942), is an American paleontologist and ornithologist. He received a PhD in 1969 from Columbia University (''Functional Morphology of Locomotion in Birds''). His research interests include: theory and metho ...
,
James Brown James Joseph Brown (May 3, 1933 – December 25, 2006) was an American singer, dancer, musician, record producer and bandleader. The central progenitor of funk music and a major figure of 20th century music, he is often referred to by the hono ...
, Mark V. Lomolino, among other biologists specializing in ecology and biogeography. Similarly, full analytical approaches have been proposed and applied to determine which speciation mode a species underwent in the past using various approaches or combinations thereof: species-level phylogenies, range overlaps, symmetry in range sizes between sister species pairs, and species movements within geographic ranges.
Molecular clock The molecular clock is a figurative term for a technique that uses the mutation rate of biomolecules to deduce the time in prehistory when two or more life forms diverged. The biomolecular data used for such calculations are usually nucleo ...
dating methods are also often employed to accurately gauge divergence times that reflect the fossil or geological record (such as with the snapping shrimp separated by the closure of the Isthmus of Panama or speciation events within the genus ''
Cyclamen ''Cyclamen'' ( or ) is a genus of 23 species of perennial flowering plants in the family Primulaceae. ''Cyclamen'' species are native to Europe and the Mediterranean Basin east to the Caucasus and Iran, with one species in Somalia. They g ...
''). Other techniques used today have employed measures of gene flow between populations,
ecological niche modelling Species distribution modelling (SDM), also known as environmental (or ecological) niche modelling (ENM), habitat modelling, predictive habitat distribution modelling, and range mapping uses computer algorithms to predict the distribution of a sp ...
(such as in the case of the Myrtle and Audubon's warblers or the environmentally-mediated speciation taking place among dendrobatid frogs in
Ecuador Ecuador ( ; ; Quechua: ''Ikwayur''; Shuar: ''Ecuador'' or ''Ekuatur''), officially the Republic of Ecuador ( es, República del Ecuador, which literally translates as "Republic of the Equator"; Quechua: ''Ikwadur Ripuwlika''; Shuar: ' ...
), and statistical testing of monophyletic groups. Biotechnological advances have allowed for large scale, multi- locus
genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ...
comparisons (such as with the possible allopatric speciation event that occurred between ancestral humans and chimpanzees), linking species' evolutionary history with ecology and clarifying phylogenetic patterns.


References


Further reading

Mathematical models of reproductive isolation * * * * * {{DEFAULTSORT:Allopatric Speciation Biogeography Ecology Evolutionary biology Speciation