1992 Algerian coup d'état

The Algerian Civil War ( ar, rtl=yes, الْحَرْبُ الْأَهْلِيَّةُ الجَزَائِرِيَّةُ, al-Ḥarb al-ʾAhlīyah al-Jazāʾirīyah) was a civil war in Algeria fought between the Algerian government and various Islamist rebel groups from 26 December 1991 (following a coup negating an Islamist electoral victory) to 8 February 2002. The war began slowly, as it initially appeared the government had successfully crushed the Islamist movement, but armed groups emerged to declare jihad and by 1994, violence had reached such a level that it appeared the government might not be able to withstand it. By 1996–97, it had become clear that the Islamist resistance had lost its popular support, although fighting continued for several years after. Kepel, ''Jihad'', 2002: p.255

The war has been referred to as 'the dirty war' (''la sale guerre''), and saw extreme violence and brutality used against civilians. Kepel, ''Jihad'', 2002: p.254 Islamists targeted journalists, over 70 of whom were killed, and foreigners, over 100 of whom were killed, although it is thought by many that security forces as well as Islamists were involved, as the government had infiltrated the insurgents. Children were widely used, particularly by the rebel groups. Total fatalities have been estimated at 44,000 to between 100,000 and 200,000.

The conflict began in December 1991, when the new and enormously popular Islamic Salvation Front (FIS) party appeared poised to defeat the ruling National Liberation Front (FLN) party in the national parliamentary elections. The elections were canceled after the first round and the military effectively took control of the government, forcing pro-reform president Chadli Bendjedid from office. After the FIS was banned and thousands of its members arrested, Islamist guerrillas rapidly emerged and began an armed campaign against the government and its supporters.

They formed themselves into various armed groups, principally the Islamic Armed Movement (MIA), based primarily in the mountains, and the more hard-line Armed Islamic Group (GIA), based primarily in the towns. The GIA motto was "no agreement, no truce, no dialogue" and it declared war on the FIS in 1994 after the latter had made progress in negotiations with the government. The MIA and various smaller insurgent bands regrouped, becoming the FIS-loyalist Islamic Salvation Army (AIS).

After talks collapsed, elections were held in 1995 and won by the army's candidate, General Liamine Zéroual. The GIA fought the government, as well as the AIS, and began a series of massacres targeting entire neighborhoods or villages which peaked in 1997. The massacre policy caused desertion and splits in the GIA, while the AIS, under attack from both sides, declared a unilateral ceasefire with the government in 1997. In the meantime, the 1997 parliamentary elections were won by a newly created pro-Army party supporting the president.

In 1999, following the election of Abdelaziz Bouteflika as president, violence declined as large numbers of insurgents "repented", taking advantage of a new amnesty law. The remnants of the GIA proper were hunted down over the next two years, and had practically disappeared by 2002, with the exception of a splinter group called the Salafist Group for Preaching and Combat (GSPC), which announced its support for Al-Qaeda in October 2003 and continued fighting an insurgency that would eventually spread to other countries in the region.

History

Background

Social conditions that led to dissatisfaction with the FLN government, and interest in jihad against it include: a population explosion in the 1960s and 70s that outstripped the stagnant economy's ability to supply jobs, housing, food and urban infrastructure to massive numbers of young in the urban areas; a collapse in the price of oil, whose sale supplied 95% of Algeria's exports and 60% of the government's budget; a single-party state ostensibly based on socialism, anti-imperialism, and popular democracy, but ruled by high-level military and party '' nomenklatura'' from the east side of the country; "corruption on a grand scale"; underemployed Arabic-speaking college graduates frustrated that the "Arab language fields of law and literature took a decisive back seat to the French-taught scientific fields in terms of funding and job opportunities"; and in response to these issues, "the most serious riots since independence" occurring in October 1988 when thousands of urban youth (known as ''hittistes'') took control of the streets despite the killing of hundreds by security forces.

Islam in Algeria after independence was dominated by Salafist "Islamic revivalism" and political Islam rather than the more apolitical popular Islam of brotherhoods found in other areas of North Africa. The brotherhoods had been dismantled by the FLN government in retaliation for lack of support and their land had been confiscated and redistributed by the FLN government after independence. Kepel, ''Jihad'', 2002: p.166 In the 1980s the government imported two renowned Islamic scholars, Mohammed al-Ghazali and Yusuf al-Qaradawi, to "strengthen the religious dimension" of the ruling National Liberation Front (FLN) party's "nationalist ideology". Rather than doing this, the clerics worked to promote "Islamic awakening" as they were " fellow travelers" of the Muslim Brotherhood and supporters of Saudi Arabia and the other Gulf monarchies. Kepel, ''Jihad'', 2002: p.165 Al-Ghazali issuing a number of fatawa (Islamic judicial rulings) favorable to positions taken by local "radical" imams.

Another Islamist, Mustafa Bouyali, a "gifted inflammatory preacher" and veteran of the Algerian independence struggle, called for the application of the '' sharia'' and creating of an Islamic state by '' jihad''. After persecution by the security services in 1982 he founded the underground ''Mouvement Islamique Armé'' (MIA), "a loose association of tiny groups", with himself as ''amir''. His group carried out a series of "bold attacks" against the regime and was able to continue its fight for five years before Bouyali was killed in February 1987. Kepel, ''Jihad'', 2002: p.162–63

Also in the 1980s, several hundred youth left Algeria for camps of Peshawar to fight jihad in Afghanistan. As Algeria was a close ally of the jihadists enemy the Soviet Union, these jihadists tended to consider the Afghan jihad a "prelude" to jihad against the Algerian FLN state. Kepel, ''Jihad'', 2002: p.164 After the Marxist government in Afghanistan fell, many of the Salafist-Jihadis returned to Algeria and supported the Islamic Salvation Front (FIS) and later the GIA insurgents.

During and after the 1988 October Riots Islamists "set about building bridges to the young urban poor". Evidence of their effectiveness was that the riots "petered out" after meetings between the President Chadli Bendjedid and Islamists Ali Benhadj and members of the Muslim Brotherhood. Kepel, ''Jihad'', 2002: p.166–67

The FLN government responded to the riots by amending the Algerian Constitution on 3 November 1988, to allow parties other than the ruling FLN to operate legally. A broad-based Islamist party, the Islamic Salvation Front (FIS) was born shortly afterwards in Algiers on 18 February 1989, and came into legal existence in September 1989. Kepel, ''Jihad'', 2002: p.169 The front was led by two men. Abbassi Madani—a professor at University of Algiers and ex-independence fighter—represented a relatively moderate religious conservatism and symbolically connected the party to the Algerian War of Independence, the traditionally emphasized source of the ruling FLN's legitimacy. His aim was to "Islamise the regime without altering society's basic fabric." Ali Benhadj, a charismatic preacher and high school teacher appealed to a younger and less educated class. An impassioned orator, he was known for his ability to both enrage or calm at will the tens of thousands of young ''hittiestes'' who came to hear him speak. However, his radical speeches and opposition to democratic rule alarmed non-Islamists and feminists. Neither Madani or Benhadj were committed to democracy.

In December 1989 Madani was quoted as saying:

We do not accept this democracy which permits an elected official to be in contradiction with Islam, the Shari'a, its doctrines and values.

and in February 1989, Benhadj stated:

There is no democracy because the only source of power is Allah through the Koran, and not the people. If the people vote against the law of God, this is nothing other than blasphemy. In this case, it is necessary to kill the non-believers for the good reason that they wish to substitute their authority for that of God.see also
International Women’s Human Rights Law Clinic

Women Living Under Muslim Laws''Shadow Report on Algeria''
p. 15.

The FIS made "spectacular" progress in the first year of its existence, with an enormous following in the urban areas. Its doctors, nurses and rescue teams showed "devotion and effectiveness" helping victims of an earthquake in Tipaza Province; its organized marches and rallies "applied steady pressure on the state" to force a promise of early elections.

FIS electoral victory, 1990

Despite President Bendjedid and his party, the FLN's new liberal reforms, in the 12 June 1990 local elections—the first free elections since independence—the Algerian voters chose the FIS. The party won 54% of votes cast, almost double that of the FLN and far more than any of the other parties. Its supporters were especially concentrated in urban areas. Kepel, ''Jihad'', 2002: p.171

Once in power in local governments, its administration and its Islamic charity were praised by many as just, equitable, orderly and virtuous, in contrast to its corrupt, wasteful, arbitrary and inefficient FLN predecessors. Kepel, ''Jihad'', 2002: p.170 Martinez, ''Algerian Civil War'', 1998: p.53–81 But it also alarmed the less-traditional educated French-speaking class. It imposed the veil on female municipal employees; pressured liquor stores, video shops and other un-Islamic establishments to close; and segregated bathing areas by gender. Kepel, ''Jihad'', 2002: p.170–71

Co-leader of the FIS Ali Benhadj declared his intention in 1990, "to ban France from Algeria intellectually and ideologically, and be done, once and for all, with those whom France has nursed with her poisoned milk."

Devout activists removed the satellite dishes of households receiving European satellite broadcast in favor of Arab satellite dishes receiving Saudi broadcasts. Educationally, the party was committed to continue the Arabization of the educational system by shifting the language of instruction in more institutions, such as medical and technological schools, from French to Arabic. Large numbers of recent graduates, the first post-independence generation educated mainly in Arabic, liked this measure, as they had found the continued use of French in higher education and public life jarring and disadvantageous. Kepel, ''Jihad'', 2002: p.173

In January 1991 following the start of the Gulf War, the FIS led giant demonstrations in support of Saddam Hussein and Iraq. One demonstration ended in front of the Ministry of Defense where radical leader Ali Benhadj gave an impassioned speech demanding a corp of volunteers be sent to fight for Saddam. The Algerian military took this as a direct affront to the military hierarchy and cohesion. After a project to realign electoral districts came to light in May, the FIS called for a general strike. Violence ensued and on 3 June 1991 a state of emergency was declared, many constitutional rights were suspended, and parliamentary elections postponed until December. The FIS began to lose the initiative and within a month the two leaders (Mandani and Benhadj) of the FIS were arrested and later sentenced to twelve years in prison. Support for armed struggle began to develop among Bouyali's followers and veterans of the Afghan jihad and on 28 November the first act of jihad against the government occurred when a frontier post (at Guemmar) was attacked and the heads of army conscripts were cut off. Kepel, ''Jihad'', 2002: p.174 Despite this the FIS participated in the legislative elections and on 26 December 1991 won the first round with 118 deputies elected as opposed to just 16 for the FLN. despite getting one million fewer votes than it had in 1990 elections. It appeared to be on track to win an absolute majority in the second round on 13 January 1992.

Military coup and cancellation of elections, 1992

The FIS had made open threats against the ruling ''pouvoir'', condemning them as unpatriotic and pro-French, as well as financially corrupt. Additionally, FIS leadership was at best divided on the desirability of democracy, and some expressed fears that a FIS government would be, as U.S. Assistant Secretary of State Edward Djerejian put it, "one person, one vote, one time."

On 11 January 1992 the army cancelled the electoral process, forcing President Bendjedid to resign and bringing in the exiled independence fighter Mohamed Boudiaf to serve as a new president. However, on 29 June 1992 he was assassinated by one of his bodyguards, Lieutenant Lambarek Boumaarafi. The assassin was sentenced to death in a closed trial in 1995. The sentence was not carried out. So many FIS members were arrested—5,000 by the army's account, 40,000 according to Gilles Kepel Kepel, ''Jihad'', 2002: p.258 and including its leader Abdelkader Hachani—that the jails had insufficient space to hold them in; camps were set up for them in the Sahara desert, and bearded men feared to leave their houses lest they be arrested as FIS sympathizers. The government officially dissolved the FIS on 4 March and its apparatus was dismantled.

Beginning of war, 1992–93

Of the few FIS activists that remained free, many took this as a declaration of war. Throughout much of the country, remaining FIS activists, along with some Islamists too radical for FIS, took to the hills (the mountains of northern Algeria, where the forest and scrub cover were well-suited to guerrilla warfare) with whatever weapons were available and became guerrilla fighters. The very sparsely populated but oil-rich Sahara would remain mostly peaceful for almost the entire duration of the conflict. This meant that the government's principal source of foreign exchange—oil exports—was largely unaffected. The tense situation was compounded by the economy, which collapsed even further that year, as almost all of the longstanding subsidies on food were eliminated.

At first Algeria remained relatively calm. But in March 1993 "a steady succession of university academics, intellectuals, writer, journalist, and medical doctors were assassinated." While not all were connected with the regime, they were French-speaking and so "in the eyes of the young urban poor who had joined the jihad ... associated with the hated image of French-speaking intellectuals". Kepel, ''Jihad'', 2002: p.262 It also "exploded" the idea of the government's triumph over the Islamists. Other attacks showed a willingness to target civilians. The bombing of the Algiers airport claimed 9 lives and injured 128 people. The FIS condemned the bombing along with the other major parties, but the FIS's influence over the guerrillas turned out to be limited.

The regime began to lose control of mountain and rural districts. In working class areas of the cities insurgents expelled the police and declared "liberated Islamic zones". Even the main roads of the cities passed into the hands of the insurgents.

Founding of the insurgent groups

The first major armed movement to emerge, starting almost immediately after the coup, was the Islamic Armed Movement (MIA). It was led by the ex-soldier "General" Abdelkader Chebouti, a longstanding Islamist. The MIA was "well-organized and structured and favored a long-term jihad" targeting the state and its representatives and based on a guerrilla campaign like that of the War of Independence. From prison, Ali Benhadj issued a fatwa giving the MIA his blessing. Kepel, ''Jihad'', 2002: p.260 In February 1992, ex-soldier, ex-Afghan fighter, and former FIS head of security Said Mekhloufi founded the Movement for an Islamic State (MEI).

The other main jihad group was called the Armed Islamic Group (GIA, from French ''Groupe Islamique Armé''). In January 1993, Abdelhak Layada declared his group independent of Chebouti's. It became particularly prominent around Algiers and its suburbs, in urban environments. It took a hardline position, opposed to both the government and the FIS, affirming that "political pluralism is equivalent to sedition" and issuing death threats against several FIS and MIA leaders. It favored a strategy of "immediate action to destabilize the enemy", by creating "an atmosphere of general insecurity" through "repeated attacks". It considered opposition to violence among some in the FIS as not only misguided but impious. It was far less selective than the MIA, which insisted on ideological training; as a result, it was regularly infiltrated by the security forces, resulting in a rapid leadership turnover as successive heads were killed.

The various groups arranged several meetings to attempt to unite their forces, accepting the overall leadership of Chebouti in theory. At the last of these, at Tamesguida on 1 September, Chebouti expressed his concern about the movement's lack of discipline, in particular worrying that the Algiers airport attack, which he had not approved, could alienate supporters. The meeting was broken up by an assault from the security forces, provoking suspicions which prevented any further meetings. However the MEI merged with the GIA in May 1994.

The FIS itself established an underground network, with clandestine newspapers and even an MIA-linked radio station, and began issuing official statements from abroad starting in late 1992. However, at this stage the opinions of the guerrilla movements on the FIS were mixed; while many supported FIS, a significant faction, led by the "Afghans", regarded party political activity as inherently un-Islamic, and therefore rejected FIS statements.

In 1993, the divisions within the guerrilla movement became more distinct. The MIA and MEI, concentrated in the ''maquis'', attempted to develop a military strategy against the state, typically targeting the security services and sabotaging or bombing state institutions. From its inception on, however, the GIA, concentrated in urban areas, called for and implemented the killing of anyone supporting the authorities, including government employees such as teachers and civil servants. It assassinated journalists and intellectuals (such as Tahar Djaout), saying that "The journalists who fight against Islamism through the pen will perish by the sword."

It soon stepped up its attacks by targeting civilians who refused to live by their prohibitions, and in September 1993 began killing foreigners, Kepel, ''Jihad'', 2002: p.263 declaring that "anyone who exceeds" the GIA deadline of 30 November "will be responsible for his own sudden death." 26 Foreigners were killed by the end of 1993 Kepel, ''Jihad'', 2002: p.264 and virtually all foreigners left the country; indeed, (often illegal) Algerian emigration too rose substantially, as people sought a way out. At the same time, the number of visas granted to Algerians by other countries began to drop substantially.

Failed negotiations and guerrilla infighting, 1994

The violence continued throughout 1994, although the economy began to improve during this time; following negotiations with the IMF, the government succeeded in rescheduling debt repayments, providing it with a substantial financial windfall, Martinez, ''Algerian Civil War'', 1998: pp. 92–3, 179 and further obtained some 40 billion francs from the international community to back its economic liberalization. Martinez, ''Algerian Civil War'', 1998: p.228-9 As it became obvious that the fighting would continue for some time, General Liamine Zéroual was named new president of the High Council of State; he was considered to belong to the '' dialoguiste'' (pro-negotiation) rather than ''éradicateur'' ( eradicator) faction of the army.

Soon after taking office, he began negotiations with the imprisoned FIS leadership, releasing some prisoners by way of encouragement. The talks split the pro-government political spectrum. The largest political parties, especially the FLN and FFS, continued to call for compromise, while other forces—most notably the General Union of Algerian Workers (UGTA), but including smaller leftist and feminist groups such as the secularist RCD—sided with the "eradicators". A few shadowy pro-government paramilitaries, such as the Organisation of Young Free Algerians (OJAL), emerged and began attacking civilian Islamist supporters. On 10 March 1994, over 1000 (mainly Islamist) prisoners escaped Tazoult prison in what appeared to be a major coup for the guerrillas; later, conspiracy theorists would suggest that this had been staged to allow the security forces to infiltrate the GIA.

Meanwhile, under Cherif Gousmi (its leader since March), the GIA became the most high-profile guerrilla army in 1994, and achieved supremacy over the FIS. In May, several Islamist leaders that were not jailed (Mohammed Said, Abderraraq Redjem), including the MEI's Said Makhloufi, joined the GIA. This was a surprise to many observers, and a blow to the FIS since the GIA had been issuing death threats against the leaders since November 1993. The move was interpreted either as the result of intra-FIS competition or as an attempt to change the GIA's course from within.

FIS-loyal guerrillas, threatened with marginalization, attempted to unite their forces. In July 1994, the MIA, together with the remainder of the MEI and a variety of smaller groups, united as the Islamic Salvation Army (a term that had previously sometimes been used as a general label for pro-FIS guerrillas), declaring their allegiance to FIS. It national amir was Madani Merzag. Kepel, ''Jihad'', 2002: p.265 By the end of 1994, they controlled over half the guerrillas of the east and west, but barely 20% in the center, near the capital, which was where the GIA were mainly based. They issued communiqués condemning the GIA's indiscriminate targeting of women, journalists and other civilians "not involved in the repression", and attacked the GIA's school arson campaign. The AIS and FIS supported a negotiated settlement with the government/military, and the AIS's role was to strengthening FIS's hand in the negotiations. The GIA was absolutely opposed to negotiations and sought instead "to purge the land of the ungodly", including the Algerian government. The two insurgent groups would soon be "locked in bloody combat."

Despite the growing power of the GIA, inside the "liberated Islamic zones" of the insurgency, conditions were beginning to deteriorate. The Islamist notables, entrepreneurs, and shopkeepers had at first funded the insurgent amirs and fighters, hoping for revenge against the government that had seized power from the FIS movement they supported. But over the months the voluntary "Islamic tax" became a "full-scale extortionist racket, operated by band of armed men claiming to represent an ever more shadowy cause," who also fought each other over turf. The extortion and the fact that the zones were surrounded by the army, impoverished and victimized the pious business class which eventually fled the zones, severely weakening the Islamist cause.

On 26 August, the GIA even declared a caliphate, or Islamic government, for Algeria, with Gousmi as "Commander of the Faithful". However, the very next day, Said Mekhloufi announced his withdrawal from the GIA, claiming that the GIA had deviated from Islam and that this caliphate was an effort by ex-FIS leader Mohammed Said to take over the GIA. The GIA continued attacks on its usual targets, notably assassinating artists, such as Cheb Hasni, and in late August added a new practice to its activities: threatening insufficiently Islamist schools with arson.

At the end of October, the government announced the failure of its negotiations with the FIS. Instead, Zéroual embarked on a new plan: he scheduled presidential elections for 1995, while promoting "eradicationists" such as Lamari within the army and organizing "self-defense militias" in villages to fight the guerrillas. The end of 1994 saw a noticeable upsurge in violence. Over 1994, Algeria's isolation deepened; most foreign press agencies, such as Reuters, left the country this year, while the Moroccan border closed and the main foreign airlines cancelled all routes. The resulting gap in news coverage was further worsened by a government order in June banning Algerian media from reporting any terrorism-related news not covered in official press releases.

A few FIS leaders, notably Rabah Kebir, had escaped into exile abroad. Upon the invitation of the Rome-based Community of Sant'Egidio, in November 1994, they began negotiations in Rome with other opposition parties, both Islamist and secular (FLN, FFS, FIS, MDA, PT, JMC). They came out with a mutual agreement on 14 January 1995: the Sant'Egidio platform. This presented a set of principles: respect for human rights and multi-party democracy, rejection of army rule and dictatorship, recognition of Islam, Arab and Berber ethnic identity as essential aspects of Algeria's national identity, demand for the release of FIS leaders, and an end to extrajudicial killing and torture on all sides.

To the surprise of many, even Ali Belhadj endorsed the agreement, which meant that the FIS had returned into the legal framework, along with the other opposition parties. The initiative was also received favorably by "influential circles" in the United States. However, for the agreement to work, the FIS still had to have the support of its original power base, when in fact the pious bourgeous had abandon it for the collaborationist Hamas party and the urban poor for jihad; Kepel, ''Jihad'', 2002: p.268 and the other side, the government, had to be interested in the agreement. Those two features being lacking, the platform's effect was at best limited – though some argue that, in the words of Andrea Riccardi who brokered the negotiations for the Community of Sant'Egidio, "the platform made the Algerian military leave the cage of a solely military confrontation and forced them to react with a political act", the 1995 presidential elections. The next few months saw the killing of some 100 Islamist prisoners in the Serkadji prison mutiny, and a major success for the security forces in battle at Ain Defla, resulting in the deaths of hundreds of guerrilla fighters.

Cherif Gousmi was eventually succeeded by Djamel Zitouni as GIA head. Zitouni extended the GIA's attacks on civilians to French soil, beginning with the hijacking of Air France Flight 8969 at the end of December 1994 and continuing with several bombings and attempted bombings throughout 1995. It is thought Zitouni hoped to undermine the FIS by proving its irrelevance to the outcome of the war, Kepel, ''Jihad'', 2002: p.268-9 and to induce the French government to withdraw support from the Algerian government to put a stop to the terrorism. But by eliminating the FIS as a factor the campaign also suggested to outsiders in America and Europe that the "only force capable of stopping the terrorists" was the Algerian government. In any case, in France the GIA attacks created a backlash of fear of young Muslim immigrants joining the campaign. Kepel, ''Jihad'', 2002: p.267 The campaign was a major fault line dividing the insurgents. The GIA "exalted in the enthusiasm of the disinherited" poor young Algerian men every time "the former colonial power" was attacked, while the FIS leaders abroad struggled to persuade "the governments of Europe and the United States" that Islamic FIS government would "guarantee social order and expand the market economy" in Algeria. Kepel, ''Jihad'', 2002: p.271

In Algeria itself, attacks continued, with car bombs and assassinations of musicians, sportsmen, and unveiled women, as well as police and soldiers. Even at this stage, the seemingly counterproductive nature of many of its attacks led to speculation (encouraged by FIS members abroad whose importance was undermined by GIA hostility to negotiation) that the group had been infiltrated by Algerian secret services. The region south of Algiers, in particular, came to be dominated by the GIA, who called it the "liberated zone". Later, it would come to be known as the " Triangle of Death".

Reports of battles between the AIS and GIA increased, and the GIA reiterated its death threats against FIS and AIS leaders, assassinating a co-founder of the FIS, Abdelbaki Sahraoui, in Paris. At this point, foreign sources estimated the total number of guerrillas to be about 27,000.

Politics resume, militias emerge, 1995–96

Following the breakdown of negotiations with the FIS, the government decided to hold presidential elections. On 16 November 1995, former head of ground forces of the Algerian military Liamine Zéroual was elected president with 60% of votes cast in an election contested by many candidates. The results reflected various popular opinions, ranging from support for secularism and opposition to Islamism to a desire for an end to the violence, regardless of politics. The FIS had urged Algerians to boycott the election and the GIA threatened to kill anyone who voted (using the slogan "one vote, one bullet"), but turnout was relatively high among the pious middle class who had formerly supported the FIS but become disillusioned by the "endless violence and racketeering by gangs of young men in the name of jihad." and turned out for Islamists Mahfoud Nahnah (25%) and Noureddine Boukrouh. Hopes grew that Algerian politics would finally be normalized. Zéroual followed this up by pushing through a new constitution in 1996, substantially strengthening the power of the President and adding a second house that would be partly elected and partly appointed by the President. In November 1996, the text was passed by a national referendum; while the official turnout rate was 80%, this vote was unmonitored, and the claimed high turnout was considered by most to be implausible.

The election results were a setback for the armed groups, who saw a significant increase in desertions immediately following the elections. The FIS' Rabah Kebir responded to the apparent shift in popular mood by adopting a more conciliatory tone towards the government, but was condemned by some parts of the party and of the AIS. The GIA was shaken by internal dissension; shortly after the election, its leadership killed the FIS leaders who had joined the GIA, accusing them of attempting a takeover. This purge accelerated the disintegration of the GIA: Mustapha Kartali, Ali Benhadjar and Hassan Hattab's factions all refused to recognize Zitouni's leadership starting around late 1995, although they would not formally break away until later. In December, the GIA killed the AIS leader for central Algeria, Azzedine Baa, and in January pledged to fight the AIS as an enemy; particularly in the west, full-scale battles between them became common.

The Government's political moves were combined with a substantial increase in the pro-Government militias' profile. "Self-defense militias", often called "Patriots" for short, consisting of trusted local citizens trained and armed by the army, were founded in towns near areas where guerrillas were active, and were promoted on national TV. The program was received well in some parts of the country, but was less popular in others; it would be substantially increased over the next few years, particularly after the massacres of 1997.

Massacres and reconciliation, 1996–97

In July 1996 GIA leader, Djamel Zitouni was killed by one of the breakaway ex-GIA factions and was succeeded by Antar Zouabri, who would prove an even bloodier leader.

1997 elections

Parliamentary elections were held on 5 June 1997. They were dominated by the National Democratic Rally (RND), a new party created in early 1997 for Zéroual's supporters, which got 156 out of 380 seats, followed mainly by the MSP (as Hamas had been required to rename itself) and the FLN at over 60 seats each. Views on this election were mixed; most major opposition parties filed complaints, and that a party (RND) founded only a few months earlier and which had never taken part in any election before should win more votes than any other seemed implausible to observers. The RND, FLN and MSP formed a coalition government, with the RND's Ahmed Ouyahia as prime minister. There were hints of a softening towards FIS: Abdelkader Hachani was released, and Abbassi Madani moved to house arrest.

Village massacres

At this point, however, a new and vital problem emerged. Starting around April (the Thalit massacre), Algeria was wracked by massacres of intense brutality and unprecedented size; previous massacres had occurred in the conflict, but always on a substantially smaller scale. Typically targeting entire villages or neighborhoods and disregarding the age and sex of victims, killing tens, and sometimes hundreds, of civilians at a time.

These massacres continued through the end of 1998, changing the nature of the political situation considerably. The areas south and east of Algiers, which had voted strongly for FIS in 1991, were hit particularly hard; the Rais and Bentalha massacres in particular shocked worldwide observers. Pregnant women were sliced open, children were hacked to pieces or dashed against walls, men's limbs were hacked off one by one, and, as the attackers retreated, they would kidnap young women to keep as sex slaves. Although this quotation by Nesroullah Yous, a survivor of Bentalha, may be an exaggeration, it expresses the apparent mood of the attackers:

We have the whole night to rape your women and children, drink your blood. Even if you escape today, we'll come back tomorrow to finish you off! We're here to send you to your God!

Dispute over responsibility

The GIA's responsibility for these massacres remains disputed. In a communique its amir Antar Zouabri claimed credit for both Rais and Bentalha, calling the killings an "offering to God" and declaring impious the victims and all Algerians who had not joined its ranks. Kepel, ''Jihad'', 2002: p.272-3 By declaring that "except for those who are with us, all others are apostates and deserving of death," it had adopted a ''takfirist'' ideology. In some cases, it has been suggested that the GIA were motivated to commit a massacre by a village's joining the Patriot program, which they saw as evidence of disloyalty; in others, that rivalry with other groups (e.g., Mustapha Kartali's breakaway faction) played a part. Its policy of massacring civilians was cited by the Salafist Group for Preaching and Combat as one of the main reasons it split off from the GIA.

However, according to reports by Amnesty International and Human Rights Watch army barracks were stationed within a few hundred meters of the villages, yet did nothing to stop the killings. At about the same time, a number of people claiming to be defectors from the Algerian security services (such as Habib Souaidia), having fled to Western countries, alleged that the security services had themselves committed some of the massacres.
These and other details raised suspicions that the state was in some way collaborating with, or even controlling parts of, the GIA (particularly through infiltration by the secret services) – a theory popularised by Nesroullah Yous, and FIS itself. This suggestion provoked furious reactions from some quarters in Algeria, and has been rejected by many researchers, though others regard it as plausible.

In contrast, Algerians such as Zazi Sadou, have collected testimonies by survivors that their attackers were unmasked and were recognised as local radicals – in one case even an elected member of the FIS. Roger Kaplan, writing in ''The Atlantic Monthly'', dismissed insinuations of Government involvement in the massacres; However, as Youcef Bouandel notes; "Regardless of the explanations one may have regarding the violence, the authorities' credibility has been tarnished by its non-assistance to endangered civilian villagers being massacred in the vicinity of military barracks. " Another explanation is the "deeply ingrained" tradition of "purposeful accumulation of wealth and status by means of violence", outweighing any basic national identity with feelings of solidarity, loyalty, for what was a province of the Ottoman Empire for much of its history.

AIS unilateral truce

The AIS, which at this point was engaged in an all-out war with the GIA as well as the Government, found itself in an untenable position. The GIA seemed a more immediately pressing enemy, and AIS members expressed fears that the massacres—which it had condemned more than once—would be blamed on them. On 21 September 1997, the AIS' head, Madani Mezrag, ordered a unilateral and unconditional ceasefire starting 1 October, in order to "unveil the enemy that hides behind these abominable massacres." The AIS thus largely took itself out of the political equation, reducing the fighting to a struggle between the Government, the GIA, and the various splinter groups that were increasingly breaking away from the GIA. Ali Benhadjar's FIS-loyalist Islamic League for Da'wa and Jihad (LIDD), formed in February 1997, allied itself with the AIS and observed the same ceasefire. Over the next three years, the AIS would gradually negotiate an amnesty for its members.

GIA destroyed, 1998–2000

After receiving much international pressure to act, the EU sent two delegations, one of them led by Mário Soares, to visit Algeria and investigate the massacres in the first half of 1998; their reports condemned the Islamist armed groups.

The GIA's policy of massacring civilians had already caused a split among its commanders, with some rejecting the policy; on 14 September 1998, this disagreement was formalized with the formation of the Salafist Group for Preaching and Combat (GSPC), based in the mountains west of Kabylie and led by Hassan Hattab. Massacres continued throughout 1998 attributed to "armed groups that had formerly belonged to the GIA", some engaged in banditry, other settling scores with the patriots or others, some enlisting in the services of landowners to frighten illegal occupants away. Kepel, ''Jihad'', 2002: p.274 Eventually towns soon became safer, although massacres continued in rural areas.

On 11 September, President Zéroual surprised observers by announcing his resignation. New elections were arranged, and on 15 April 1999, the army-backed ex-independence-fighter Abdelaziz Bouteflika was elected president with, according to the authorities, 74% of the votes. All the other candidates had withdrawn from the election shortly before, citing fraud concerns. Bouteflika continued negotiations with the AIS, and on 5 June the AIS agreed, in principle, to disband. Bouteflika followed up this success for the Government by pardoning a number of Islamist prisoners convicted of minor offenses and pushing the Civil Harmony Act through Parliament, a law allowing Islamist fighters not guilty of murder or rape to escape all prosecution if they turn themselves in.

This law was finally approved by referendum on 16 September 1999, and a number of fighters, including Mustapha Kartali, took advantage of it to give themselves up and resume normal life—sometimes angering those who had suffered at the hands of the guerrillas. FIS leadership expressed dissatisfaction with the results, feeling that the AIS had stopped fighting without solving any of the issues; but their main voice outside of prison, Abdelkader Hachani, was assassinated on 22 November. Violence declined, though not stopping altogether, and a sense of normality started returning to Algeria.

The AIS fully disbanded after 11 January 2000, having negotiated a special amnesty with the Government. The GIA, torn by splits and desertions and denounced by all sides even in the Islamist movement, was slowly destroyed by army operations over the next few years; by the time of Antar Zouabri's death in early 2002, it was effectively incapacitated. The Government's efforts were given a boost in the aftermath of 11 September 2001 attacks; United States sympathy for Algeria's government increased, and was expressed concretely through such actions as the freezing of GIA and GSPC assets and the supply of infrared goggles to the army.

GSPC continues

With the GIA's decline, the GSPC was left as the most active rebel group, with about 300 fighters in 2003. It continued a campaign of assassinations of police and army personnel in its area, and also managed to expand into the Sahara, broadening the conflict into the insurgency in the Maghreb (2002–present). Its southern division, led by Amari Saifi (nicknamed "Abderrezak el-Para", the "paratrooper"), kidnapped a number of German tourists in 2003, before being forced to flee to sparsely populated areas of Mali, and later Niger

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