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MycoBank
MycoBank is an online database, documenting new mycological names and combinations, eventually combined with descriptions and illustrations. It is run by the Westerdijk Fungal Biodiversity Institute in Utrecht. Each novelty, after being screened by nomenclatural experts and found in accordance with the ICN (International Code of Nomenclature for algae, fungi, and plants), is allocated a unique MycoBank number before the new name has been validly published. This number then can be cited by the naming author in the publication where the new name is being introduced. Only then, this unique number becomes public in the database. By doing so, this system can help solve the problem of knowing which names have been validly published and in which year. MycoBank is linked to other important mycological databases such as ''Index Fungorum'', Life Science Identifiers, Global Biodiversity Information Facility The Global Biodiversity Information Facility (GBIF) is an international organis ...
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Index Fungorum
''Index Fungorum'' is an international project to index all formal names (scientific names) in the fungus kingdom. the project is based at the Royal Botanic Gardens, Kew, one of three partners along with Landcare Research and the Institute of Microbiology, Chinese Academy of Sciences. It is somewhat comparable to the International Plant Names Index (IPNI), in which the Royal Botanic Gardens is also involved. A difference is that where IPNI does not indicate correct names, the ''Index Fungorum'' does indicate the status of a name. In the returns from the search page a currently correct name is indicated in green, while others are in blue (a few, aberrant usages of names are indicated in red). All names are linked to pages giving the correct name, with lists of synonyms. ''Index Fungorum'' is one of three nomenclatural repositories recognized by the Nomenclature Committee for Fungi; the others are '' MycoBank'' and '' Fungal Names''. Current names in ''Index Fungorum'' (''S ...
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International Code Of Nomenclature For Algae, Fungi, And Plants
The ''International Code of Nomenclature for algae, fungi, and plants'' (ICN) is the set of rules and recommendations dealing with the formal botanical names that are given to plants, fungi and a few other groups of organisms, all those "traditionally treated as algae, fungi, or plants".. It was formerly called the ''International Code of Botanical Nomenclature'' (ICBN); the name was changed at the International Botanical Congress in Melbourne in July 2011 as part of the ''Melbourne Code''. which replaced the ''Vienna Code'' of 2005. The current version of the code is the ''Shenzhen Code'' adopted by the International Botanical Congress held in Shenzhen, China, in July 2017. As with previous codes, it took effect as soon as it was ratified by the congress (on 29 July 2017), but the documentation of the code in its final form was not published until 26 June 2018. The name of the ''Code'' is partly capitalized and partly not. The lower-case for "algae, fungi, and plants" indica ...
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Life Science Identifiers
Life Science Identifiers are a way to name and locate pieces of information on the web. Essentially, an LSID is a unique identifier for some data, and the LSID protocol specifies a standard way to locate the data (as well as a standard way of describing that data). They are a little like DOIs used by many publishers. An LSID is represented as a uniform resource name (URN) with the following format: * urn:lsid::: The ''lsid:'' namespace, however, is not registered with the Internet Assigned Numbers Authority (IANA), and so these are not strictly URNs or URIs. LSIDs may be resolved in URLs, e.g. http://zoobank.org/urn:lsid:zoobank.org:pub:CDC8D258-8F57-41DC-B560-247E17D3DC8C Controversy over the use of LSIDs There has been a lot of interest in LSIDs in both the bioinformatics and the biodiversity communities, with the latter continuing to use them as a way of identifying species in global catalogues. However, more recently, as understanding has increased of how HTTP URIs can per ...
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Database
In computing, a database is an organized collection of data stored and accessed electronically. Small databases can be stored on a file system, while large databases are hosted on computer clusters or cloud storage. The design of databases spans formal techniques and practical considerations, including data modeling, efficient data representation and storage, query languages, security and privacy of sensitive data, and distributed computing issues, including supporting concurrent access and fault tolerance. A database management system (DBMS) is the software that interacts with end users, applications, and the database itself to capture and analyze the data. The DBMS software additionally encompasses the core facilities provided to administer the database. The sum total of the database, the DBMS and the associated applications can be referred to as a database system. Often the term "database" is also used loosely to refer to any of the DBMS, the database system or an app ...
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Mycology
Mycology is the branch of biology concerned with the study of fungi, including their genetic and biochemical properties, their taxonomy and their use to humans, including as a source for tinder, traditional medicine, food, and entheogens, as well as their dangers, such as toxicity or infection. A biologist specializing in mycology is called a mycologist. Mycology branches into the field of phytopathology, the study of plant diseases, and the two disciplines remain closely related because the vast majority of plant pathogens are fungi. Overview Historically, mycology was a branch of botany because, although fungi are evolutionarily more closely related to animals than to plants, this was not recognized until a few decades ago. Pioneer mycologists included Elias Magnus Fries, Christian Hendrik Persoon, Anton de Bary, Elizabeth Eaton Morse, and Lewis David von Schweinitz. Beatrix Potter, author of '' The Tale of Peter Rabbit'', also made significant contribut ...
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Westerdijk Fungal Biodiversity Institute
The ''Westerdijk Institute'', or Westerdijk Fungal Biodiversity Institute, is part of the Royal Netherlands Academy of Arts and Sciences. The institute was renamed on 10 February 2017, after Johanna Westerdijk, the first female professor in the Netherlands and director of the institute from 1907 to 1958. The former name of the institute was CBS-KNAW Fungal Biodiversity Centre or Centraalbureau voor Schimmelcultures (''Central Bureau of Fungal Cultures'' in English). Despite the name change the collection maintained by the institute remains the CBS collections and the use of CBS numbers for the strains continues. The institute is located in Utrecht Science Park, a suburb of Utrecht. Before it had been located between offices at the university in Delft and in Baarn. CBS was established in 1904 as a collection of living fungi and algae at the Eleventh International Botanical Congress in Vienna. Since 2002 Pedro Willem Crous has been director of CBS as the successor of Dirk van der ...
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Utrecht
Utrecht ( , , ) is the fourth-largest city and a municipality of the Netherlands, capital and most populous city of the province of Utrecht. It is located in the eastern corner of the Randstad conurbation, in the very centre of mainland Netherlands, about 35 km south east of the capital Amsterdam and 45 km north east of Rotterdam. It has a population of 361,966 as of 1 December 2021. Utrecht's ancient city centre features many buildings and structures, several dating as far back as the High Middle Ages. It has been the religious centre of the Netherlands since the 8th century. It was the most important city in the Netherlands until the Dutch Golden Age, when it was surpassed by Amsterdam as the country's cultural centre and most populous city. Utrecht is home to Utrecht University, the largest university in the Netherlands, as well as several other institutions of higher education. Due to its central position within the country, it is an important hub for both rail and roa ...
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Nomenclature
Nomenclature (, ) is a system of names or terms, or the rules for forming these terms in a particular field of arts or sciences. The principles of naming vary from the relatively informal conventions of everyday speech to the internationally agreed principles, rules and recommendations that govern the formation and use of the specialist terms used in scientific and any other disciplines. Naming "things" is a part of general human communication using words and language: it is an aspect of everyday taxonomy as people distinguish the objects of their experience, together with their similarities and differences, which observers identify, name and classify. The use of names, as the many different kinds of nouns embedded in different languages, connects nomenclature to theoretical linguistics, while the way humans mentally structure the world in relation to word meanings and experience relates to the philosophy of language. Onomastics, the study of proper names and their origi ...
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Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international organisation that focuses on making scientific data on biodiversity available via the Internet using web services. The data are provided by many institutions from around the world; GBIF's information architecture makes these data accessible and searchable through a single portal. Data available through the GBIF portal are primarily distribution data on plants, animals, fungi, and microbes for the world, and scientific names data. The mission of the GBIF is to facilitate free and open access to biodiversity data worldwide to underpin sustainable development. Priorities, with an emphasis on promoting participation and working through partners, include mobilising biodiversity data, developing protocols and standards to ensure scientific integrity and interoperability, building an informatics architecture to allow the interlinking of diverse data types from disparate sources, promoting capacity building and catal ...
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Nomenclature Committee For Fungi
International Botanical Congress (IBC) is an international meeting of botanists in all scientific fields, authorized by the International Association of Botanical and Mycological Societies (IABMS) and held every six years, with the location rotating between different continents. The current numbering system for the congresses starts from the year 1900; the XVIII IBC was held in Melbourne, Australia, 24–30 July 2011, and the XIX IBC was held in Shenzhen, China, 23–29 July 2017. The IBC has the power to alter the ICN (International Code of Nomenclature for algae, fungi, and plants), which was renamed from the International Code of Botanical Nomenclature (ICBN) at the XVIII IBC. Formally the power resides with the Plenary Session; in practice this approves the decisions of the Nomenclature Section. The Nomenclature Section meets before the actual Congress and deals with all proposals to modify the Code: this includes ratifying recommendations from sub-committees on conservation. T ...
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