ZG16
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Zymogen Granule Protein 16 is a
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, respo ...
that is encoded by the ZG16
gene In biology, the word gene (from , ; "...Wilhelm Johannsen coined the word gene to describe the Mendelian units of heredity..." meaning ''generation'' or ''birth'' or ''gender'') can have several different meanings. The Mendelian gene is a ba ...
. Other common names include hZG16, FLJ43571, FLJ92276, secretory lectin ZG16, jacalin-like lectin domain containing, JCLN, JCLN1, MGC183567, MGC34820, ZG16A, zymogen granule membrane protein 16, zymogen granule protein 16 homolog, and zymogen granule protein. The gene is located on Chromosome 16: 29,778,256-29,782,973. The gene obtains one transcript (one
splice variant Alternative splicing, or alternative RNA splicing, or differential splicing, is an alternative splicing process during gene expression that allows a single gene to code for multiple proteins. In this process, particular exons of a gene may be in ...
) and 128
orthologues Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the evolutionary history of life. Two segments of DNA can have shared ancestry because of three phenomena: either a sp ...
.


Function

ZG16 enables
protein transport :''This article deals with protein targeting in eukaryotes unless specified otherwise.'' Protein targeting or protein sorting is the biological mechanism by which proteins are transported to their appropriate destinations within or outside the ce ...
,
protein trafficking :''This article deals with protein targeting in eukaryotes unless specified otherwise.'' Protein targeting or protein sorting is the biological mechanism by which proteins are transported to their appropriate destinations within or outside the c ...
, carbohydrate binding, and peptidoglycan binding. Zymogen Granule Protein 16 also acts as a linker molecule between the secretory proteins in the trans-Golgi network (TGN) and the zymogen granule membrane (ZGM). The protein is located in the Golgi lumen and collagen-containing extracellular matrix. ZG16 is a protein that is highly selective for cytoplasmic expression in mucin-producing
goblet cell Goblet cells are simple columnar epithelial cells that secrete gel-forming mucins, like mucin 5AC. The goblet cells mainly use the merocrine method of secretion, secreting vesicles into a duct, but may use apocrine methods, budding off their secre ...
s, which are cells that are located in the gastrointestinal tract. These cells produce mucus to protect mucous membranes that line the surface of our internal organs. The protein is mainly expressed in the human colon, endometrium, and spleen. Small amounts of ZG16 gene expression are also found in the liver and bone marrow.


Structure

The gene length is about 167 amino acids long. The protein existence level is PE1, indicating that the protein is a marker for exocrine pancreatic function. The
ligand In coordination chemistry, a ligand is an ion or molecule (functional group) that binds to a central metal atom to form a coordination complex. The bonding with the metal generally involves formal donation of one or more of the ligand's electr ...
that ZG16 is able to bind is
Lectin Lectins are carbohydrate-binding proteins that are highly specific for sugar groups that are part of other molecules, so cause agglutination of particular cells or precipitation of glycoconjugates and polysaccharides. Lectins have a role in rec ...
. The basal
isoelectric point The isoelectric point (pI, pH(I), IEP), is the pH at which a molecule carries no net electrical charge or is electrically neutral in the statistical mean. The standard nomenclature to represent the isoelectric point is pH(I). However, pI is also u ...
of the protein is 9.43. The protein mass (Da) is different for the Human ZG16 protein, Mouse ZG16 protein, and the Rat ZG16 Protein.


Interaction with gram-positive bacteria

Cells in our colon obtain bacteria that reside in a mutualistic relationship with our host cells to prevent harmful bacteria from causing inflammation. Our colon obtains two mucus layers: the impenetrable mucus (IM) and penetrable mucus (PM). The IM is classified as a MUC2 mucin polymeric network since it works to build intestinal mucus. The IM is less penetrable than the PM. The ZG16 protein works with the MUC2 network to keep
Gram-positive bacteria In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bact ...
away from the epithelial cells in the colon. The absence of ZG16 will allow Gram-positive bacteria to enter the epithelial cells and contribute to the production of cancerous cells in the colon. ZG16 and Gram-positive bacteria reside in symbiosis to prevent penetration of harmful Gram-positive bacteria, allowing for bacterial limitation in epithelial cells of the colon.


Associated diseases

ZG16 is associated with these following diseases:
Cancer Cancer is a group of diseases involving abnormal cell growth with the potential to invade or spread to other parts of the body. These contrast with benign tumors, which do not spread. Possible signs and symptoms include a lump, abnormal b ...
, Colitis,
Colonic disease The large intestine, also known as the large bowel, is the last part of the gastrointestinal tract and of the digestive system in tetrapods. Water is absorbed here and the remaining waste material is stored in the rectum as feces before being rem ...
, Episodic Kinesigenic Dyskinesia 1,
Crohn's Disease Crohn's disease is a type of inflammatory bowel disease (IBD) that may affect any segment of the gastrointestinal tract. Symptoms often include abdominal pain, diarrhea (which may be bloody if inflammation is severe), fever, abdominal distension ...
, EEC Syndrome,
Spondylocostal Dysostosis Spondylocostal dysostosis, also known as Jarcho-Levin syndrome (JLS), is a rare, heritable axial skeleton growth disorder. It is characterized by widespread and sometimes severe malformations of the vertebral column and ribs, shortened thorax, an ...
,
Autoimmune Disease An autoimmune disease is a condition arising from an abnormal immune response to a functioning body part. At least 80 types of autoimmune diseases have been identified, with some evidence suggesting that there may be more than 100 types. Nearly a ...
,
Benign Familial Infantile Epilepsy Benign familial infantile epilepsy (BFIE) is an epilepsy syndrome. Affected children, who have no other health or developmental problems, develop seizures during infancy. These seizures have focal origin within the brain but may then spread to b ...
, Schizophrenia 3, and Cystic Fibrosis.


EEC syndrome

Ectrodactyly–ectodermal dysplasia–cleft syndrome (EEC syndrome) is considered to be an autosomal dominant disease. The amount of individuals with this disease is 1 in 90,000 general population. The rare disease can cause abnormalities of the eyes, urinary tract, and hair glands. The physical features of individuals with this disease include missing or irregular fingers and toes, cleft lip, lobster claw hand/foot, carious teeth, thick eyebrows, and distinguishable facial structures. All of these symptoms can be seen individually or all together. There are two types of EEC syndrome: EEC type 3 (EEC3) and EEC type 1 (EEC1). Mutations present on protein coding regions of the ZG16 gene lead to EEC syndrome. Treatment includes assistance from a pedodontics, pediatrician, oral and plastic surgeon, ophthalmologist, and renal specialist.


Spondylocostal dysostosis 5

Spondylocostal dysostosis, which is a sub-class of
Jarcho-Levin Syndrome Spondylocostal dysostosis, also known as Jarcho-Levin syndrome (JLS), is a rare, heritable axial skeleton growth disorder. It is characterized by widespread and sometimes severe malformations of the vertebral column and ribs, shortened thorax, an ...
, is caused by abnormal development of spinal bones which leads to segmentation defects on the spinal vertebrae and ribs. The disease is
autosomal recessive In genetics, dominance is the phenomenon of one variant (allele) of a gene on a chromosome masking or overriding the effect of a different variant of the same gene on the other copy of the chromosome. The first variant is termed dominant and t ...
and can be characterized by these physical features: short trunk in proportion to height, short neck, and non-progressive mild scoliosis. Some individuals may experience respiratory distress as well. Spondylocostal dysostosis 5 is caused by mutations present in the ZG16 gene. These mutations are specifically caused by 16p11.2 proximal deletion syndrome, which occurs when there is a deletion of the p11.2 region of chromosome 16. Treatment for Spondylocostal Dysostosis 5 includes spinal surgery, external bracing with the use of a prosthetic titanium rib, growing rods, and respiratory support.


Colorectal Cancer

ZG16 can serve as a biomarker for diagnosis of
colorectal cancer Colorectal cancer (CRC), also known as bowel cancer, colon cancer, or rectal cancer, is the development of cancer from the colon or rectum (parts of the large intestine). Signs and symptoms may include blood in the stool, a change in bowel m ...
(CRC). CRC is a type of cancer where cells in the colon or rectum grow uncontrollably, causing issues to passageways in the anus. CRC is considered to be the third most common cancer diagnosed around the world. ZG16 is one of the most significantly down-regulated genes in CRC tissues. PD-L1 is a type of
transmembrane protein A transmembrane protein (TP) is a type of integral membrane protein that spans the entirety of the cell membrane. Many transmembrane proteins function as gateways to permit the transport of specific substances across the membrane. They frequentl ...
that is expressed on tumor-infiltrating cells, such as B or T-cells. Its main function in CRC is to suppress antigen specific T-cells in the lymph nodes. Since PD-L1 proteins are regulated by
N-glycosylation ''N''-linked glycosylation, is the attachment of an oligosaccharide, a carbohydrate consisting of several sugar molecules, sometimes also referred to as glycan, to a nitrogen atom (the amide nitrogen of an asparagine (Asn) residue of a protein), ...
, the ZG16 works to bind directly to glycosylated PD-L1 proteins through its lectin domain. This allows the ZG16 protein to promote T-cell activity to fight cancerous colon cells. To learn more about the association between CRC and ZG16, a RT-PCR was performed on tumor and normal tissue samples of 23 CRC patients. Results showed a suppressed response of the ZG16 gene in the tissue samples of the colon, rectum, and small intestine. The gene was lost in all CRC tissue samples and was suppressed from normal to
adenoma An adenoma is a benign tumor of epithelial tissue with glandular origin, glandular characteristics, or both. Adenomas can grow from many glandular organs, including the adrenal glands, pituitary gland, thyroid, prostate, and others. Some adenom ...
to
carcinoma Carcinoma is a malignancy that develops from epithelial cells. Specifically, a carcinoma is a cancer that begins in a tissue that lines the inner or outer surfaces of the body, and that arises from cells originating in the endodermal, mesodermal ...
, indicating that the gene plays an important role in initiation of CRC.


Protein interactions

* SGTA * UBQLN * UBQLN4 *
ASPH Aspartyl/asparaginyl beta-hydroxylase (''HAAH'') is an enzyme that in humans is encoded by the ''ASPH'' gene. ASPH is an alpha-ketoglutarate-dependent hydroxylase, a superfamily non-haem iron-containing proteins. Function This gene is thought ...
* CTNNA3 * GLYCTK *
KCNIP3 Calsenilin is a protein that in humans is encoded by the ''KCNIP3'' gene. Function This gene encodes a member of the family of voltage-gated potassium (Kv) channel-interacting proteins, which belong to the neuronal calcium sensor family of pro ...
*
PUF60 Poly(U)-binding-splicing factor PUF60 is a protein that in humans is encoded by the ''PUF60'' gene. The protein encoded by this gene is a Ro RNP-binding protein. It interacts with Ro RNPs and their interaction is thought to represent a gain of f ...
* SGTB *
UBE2I SUMO-conjugating enzyme UBC9 is an enzyme that in humans is encoded by the ''UBE2I'' gene. It is also sometimes referred to as "ubiquitin conjugating enzyme E2I" or "ubiquitin carrier protein 9", even though these names do not accurately describe ...
*
UBQLN1 Ubiquilin-1 is a protein that in humans is encoded by the ''UBQLN1'' gene. Ubiquilins contain two domains, an N-terminal ubiquitin-like domain and a C-terminal ubiquitin-associated domain. They physically associate with both proteasomes and ubi ...
*
UBQLN2 Ubiquilin-2 is a protein that in humans is encoded by the ''UBQLN2'' gene. Function This gene encodes a ubiquitin-like protein ( ubiquilin) that shares high degree of similarity with related products in yeast, rat and frog. Ubiquilins contain ...


References


Further reading

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