Yi Zhang (biochemist)
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Yi Zhang () is a Chinese-American
biochemist Biochemists are scientists who are trained in biochemistry. They study chemical processes and chemical transformations in living organisms. Biochemists study DNA, proteins and Cell (biology), cell parts. The word "biochemist" is a portmanteau of ...
who specializes in the fields of
epigenetics In biology, epigenetics is the study of stable phenotypic changes (known as ''marks'') that do not involve alterations in the DNA sequence. The Greek prefix '' epi-'' ( "over, outside of, around") in ''epigenetics'' implies features that are "o ...
,
chromatin Chromatin is a complex of DNA and protein found in eukaryotic cells. The primary function is to package long DNA molecules into more compact, denser structures. This prevents the strands from becoming tangled and also plays important roles in r ...
, and developmental reprogramming. He is a Fred Rosen Professor of Pediatrics and professor of genetics at
Harvard Medical School Harvard Medical School (HMS) is the graduate medical school of Harvard University and is located in the Longwood Medical Area of Boston, Massachusetts. Founded in 1782, HMS is one of the oldest medical schools in the United States and is consi ...
, a senior investigator of Program in Cellular and Molecular Medicine at Boston Children's Hospital, and an investigator of the
Howard Hughes Medical Institute The Howard Hughes Medical Institute (HHMI) is an American non-profit medical research organization based in Chevy Chase, Maryland. It was founded in 1953 by Howard Hughes, an American business magnate, investor, record-setting pilot, engineer, fil ...
. He is also an associate member of the Harvard Stem Cell Institute, as well as the
Broad Institute of MIT and Harvard Broad(s) or The Broad(s) may refer to: People * A slang term for a woman. * Broad (surname), a surname Places * Broad Peak, on the border between Pakistan and China, the 12th highest mountain on Earth * The Broads, a network of mostly navi ...
. He is best known for his discovery of several classes of epigenetic
enzyme Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. A ...
s and the identification of epigenetic barriers of SCNT cloning.


Education

Zhang received his B.Sc. and master's degrees in biophysics from
China Agricultural University China Agricultural University (CAU, ; abbreviated as 农大) is a public research university in Beijing, People's Republic of China specializing in agriculture, biology, engineering, veterinary medicine, economics, management, humanities and soc ...
in 1984 and 1987, respectively. He then received his Ph.D. in molecular biophysics from
Florida State University Florida State University (FSU) is a public research university in Tallahassee, Florida. It is a senior member of the State University System of Florida. Founded in 1851, it is located on the oldest continuous site of higher education in the st ...
in 1995. From 1995 to 1999, He did his postdoctoral training in the lab of Danny Reinberg at the
Howard Hughes Medical Institute The Howard Hughes Medical Institute (HHMI) is an American non-profit medical research organization based in Chevy Chase, Maryland. It was founded in 1953 by Howard Hughes, an American business magnate, investor, record-setting pilot, engineer, fil ...
, Robert Wood Johnson Medical School of the
University of Medicine and Dentistry of New Jersey The University of Medicine and Dentistry of New Jersey (UMDNJ) was a state-run health sciences institution of New Jersey, United States. It was founded as the Seton Hall College of Medicine and Dentistry in 1954, and by the 1980s was both a major ...
.


Career and research


Appointments

*2012–present Fred Rosen Professor, Department of Genetics and Pediatrics,
Harvard Medical School Harvard Medical School (HMS) is the graduate medical school of Harvard University and is located in the Longwood Medical Area of Boston, Massachusetts. Founded in 1782, HMS is one of the oldest medical schools in the United States and is consi ...
& Boston Children's Hospital *2005–present Investigator,
Howard Hughes Medical Institute The Howard Hughes Medical Institute (HHMI) is an American non-profit medical research organization based in Chevy Chase, Maryland. It was founded in 1953 by Howard Hughes, an American business magnate, investor, record-setting pilot, engineer, fil ...
*2007–2013 Founder and scientific advisor of Epizyme, Cambridge, MA *1999–2012 Assistant Professor to Kenan Distinguished Professor, Dept. of Biochemistry & Biophysics,
University of North Carolina at Chapel Hill A university () is an institution of higher (or tertiary) education and research which awards academic degrees in several academic disciplines. Universities typically offer both undergraduate and postgraduate programs. In the United States ...


Research

Zhang has published more than 180 highly influential papers. These studies have been cited over 88,000 times (
H-index The ''h''-index is an author-level metric that measures both the productivity and citation impact of the publications, initially used for an individual scientist or scholar. The ''h''-index correlates with obvious success indicators such as winn ...
121), making him one of the top 10 authors of high impact papers in the fields of molecular biology and genetics (ScienceWatch 2008), and one of the "most influential scientific minds" (ScienceWatch 2014). He was also a Founder of Epizyme, and NewStem (Natick, MA). His current efforts are focused on the molecular mechanism of embryonic development & reprogramming, brain reward-related learning & memory, pancreatic cancer. Zhang has made several landmark discoveries in the fields of
epigenetics In biology, epigenetics is the study of stable phenotypic changes (known as ''marks'') that do not involve alterations in the DNA sequence. The Greek prefix '' epi-'' ( "over, outside of, around") in ''epigenetics'' implies features that are "o ...
,
chromatin Chromatin is a complex of DNA and protein found in eukaryotic cells. The primary function is to package long DNA molecules into more compact, denser structures. This prevents the strands from becoming tangled and also plays important roles in r ...
and developmental reprogramming. # Zhang was the first to systematically identify and characterize six
histone methyltransferase Histone methyltransferases (HMT) are histone-modifying enzymes (e.g., histone-lysine N-methyltransferases and histone-arginine N-methyltransferases), that catalyze the transfer of one, two, or three methyl groups to lysine and arginine residues of ...
s, including the H4R3
methyltransferase Methyltransferases are a large group of enzymes that all methylate their substrates but can be split into several subclasses based on their structural features. The most common class of methyltransferases is class I, all of which contain a Rossm ...
PRMT1, the H3K79 methyltransferase Dot1L, and the H3K27me3 methyltransferase EZH2/ PRC2. He went on to demonstrate the function of H3K27me3 methylation in X chromosome inactivation, genomic imprinting, and non-coding RNA regulation. He was also the first to uncover
PRC1 Protein Regulator of cytokinesis 1 (PRC1) is a protein that in humans is encoded by the ''PRC1'' gene and is involved in cytokinesis. Function PRC1 protein is expressed at relatively high levels during S and G2/M phases of the cell cycle before ...
as an
E3 ligase A ubiquitin ligase (also called an E3 ubiquitin ligase) is a protein that recruits an E2 ubiquitin-conjugating enzyme that has been loaded with ubiquitin, recognizes a protein substrate, and assists or directly catalyzes the transfer of ubiquitin ...
mediating H2A
ubiquitylation Ubiquitin is a small (8.6 kDa) regulatory protein found in most tissues of eukaryotic organisms, i.e., it is found ''ubiquitously''. It was discovered in 1975 by Gideon Goldstein and further characterized throughout the late 1970s and 1980s. Fou ...
. By discovering two
enzymatic Enzymes () are proteins that act as biological catalysts by accelerating chemical reactions. The molecules upon which enzymes may act are called substrates, and the enzyme converts the substrates into different molecules known as products. A ...
activities of two PcG protein complexes, Zhang has contributed significantly to our current understanding of the PcG silencing mechanism. # Zhang was the first to show JmjC domain is a signature motif for histone demethylases. He not only worked out the demethylation mechanism, but also demonstrated that JmjC demethylases can demethylate trimethyl state. Zhang went on to show the diverse function of histone demethylases in
spermatogenesis Spermatogenesis is the process by which haploid spermatozoa develop from germ cells in the seminiferous tubules of the testis. This process starts with the mitotic division of the stem cells located close to the basement membrane of the tubule ...
,
metabolism Metabolism (, from el, μεταβολή ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cell ...
,
cancer Cancer is a group of diseases involving abnormal cell growth with the potential to invade or spread to other parts of the body. These contrast with benign tumors, which do not spread. Possible signs and symptoms include a lump, abnormal b ...
, iPSC generation, and
somatic cell nuclear transfer In genetics and developmental biology, somatic cell nuclear transfer (SCNT) is a laboratory strategy for creating a viable embryo from a body cell and an egg cell. The technique consists of taking an enucleated oocyte (egg cell) and implanting a ...
reprogramming. The last finding overcomes a major barrier in SCNT cloning, contributing to the success of the first primate cloning by a team of Chinese scientists # Zhang not only discovered 5-formylcytosine (5fC), and 5-carboxylcytosine (5caC) in mammalian genomic DNA, but also elucidated the DNA demethylation mechanism by demonstrating that
Tet Tet or TET may refer to: Vietnam *Tết or Tết Nguyên Đán, the Vietnamese new year, Lunar new year *Tet Offensive, a military campaign during the Vietnam War that began in 1968 **Tet 1969 Geography *Têt (river) in Roussillon, France *Tét, ...
proteins can sequentially oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5fC, and 5caC in a cyclic manner in mouse embryonic stem cells. He continued to reveal the function of Tet proteins in
zygotic A zygote (, ) is a eukaryotic cell formed by a fertilization event between two gametes. The zygote's genome is a combination of the DNA in each gamete, and contains all of the genetic information of a new individual organism. In multicellula ...
DNA demethylation,
germ cell Germ or germs may refer to: Science * Germ (microorganism), an informal word for a pathogen * Germ cell, cell that gives rise to the gametes of an organism that reproduces sexually * Germ layer, a primary layer of cells that forms during embry ...
development, and genomic imprinting erasure #Zhang contributed to the understanding of the molecular events during mammalian
embryogenesis An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm ...
by uncovering an important function of de novo nucleosome assembly in nuclear pore complex formation, identifying key factors for zygotic genome activation, revealing a new mechanism of genomic imprinting and imprinted
X-inactivation X-inactivation (also called Lyonization, after English geneticist Mary Lyon) is a process by which one of the copies of the X chromosome is inactivated in therian female mammals. The inactive X chromosome is silenced by being packaged into ...
, as well as the role of this new imprinting mechanism in SCNT cloning


Honors and recognition

*2023 Elected to the National Academy of Medicine *2012 Fellow,
American Association for the Advancement of Science The American Association for the Advancement of Science (AAAS) is an American international non-profit organization with the stated goals of promoting cooperation among scientists, defending scientific freedom, encouraging scientific respons ...
*2012 Fred Rosen chair,
Harvard Medical School Harvard Medical School (HMS) is the graduate medical school of Harvard University and is located in the Longwood Medical Area of Boston, Massachusetts. Founded in 1782, HMS is one of the oldest medical schools in the United States and is consi ...
& Boston Children's Hospital *2009 Senior Investigator Award, Chinese Biological Investigators Society *2009 Kenan Distinguished Professorship,
University of North Carolina-Chapel Hill A university () is an institution of higher (or tertiary) education and research which awards academic degrees in several academic disciplines. Universities typically offer both undergraduate and postgraduate programs. In the United States, the ...
*2008 The Battle Distinguished Cancer Research Award, University of North Carolina-Chapel Hill *2008 Top 10 authors of high-impact papers by ScienceWatch *2005 Investigator,
Howard Hughes Medical Institute The Howard Hughes Medical Institute (HHMI) is an American non-profit medical research organization based in Chevy Chase, Maryland. It was founded in 1953 by Howard Hughes, an American business magnate, investor, record-setting pilot, engineer, fil ...
*2004 Hettleman Prize for Artistic and Scholarly Achievement, University of North Carolina-Chapel Hill *2000 V. Scholar Award, V Foundation for Cancer Research


References


External links


The Zhang LabYi Zhang's Google Scholar Profile
{{DEFAULTSORT:Zhang, Yi Year of birth missing (living people) Living people Epigeneticists Stem cell researchers Howard Hughes Medical Investigators Fellows of the American Association for the Advancement of Science Harvard Medical School faculty Chemists from Chongqing Chinese emigrants to the United States American biochemists Chinese biochemists China Agricultural University alumni Florida State University alumni Educators from Chongqing Biologists from Chongqing Members of the National Academy of Medicine